ISNsp4

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003267 ND Nostoc sp.
Nostoc sp. PCC 7120 plasmid pCC7120gamma
DNA section
IS Length : 1335 bp

Ends


IR Length : 25/31

IRL : GGCATCATGTAAAAATAACTTGAACGATTTACCGAATAGTTAGATCATCA
IRR : GGAGTTATGTAAAAATAACCTGAACAATTAAGTGCCTACTTTGGGT

Insertion site


Left flankDirect repeatRight flankDR Length
CAGGTTCAAACTGAAGTTAGTTCATGGTCGCA3

DNA sequence

GGCATCATGTAAAAATAACTTGAACGATTTACCGAATAGTTAGATCATCAGAATGTAACCGAATTAAAGGCTTAGATGTCTGATAACCAAGTAGTAGAAA
GCATTCAAGACAAGTATGATTCGTTAAAGCCCTATTTGAACGAGAAAACACGGCGTGTTTGGGCAGCAATCGAAGCCCGAAGCCTGGGGTGGGGAGGTAT
CAGTCAGGTTGCGCTCGCAACTGGACTATCCCGGACTACAATCCATGCTGGGATAAGGTTATTGTTAGAAGCTTCAGAGGAAGAAACCTCGAATGGCGAT
AGTAATCGAATTCGTTCGTCAGGTGCTGGACGTAAACTACTGGAAGAAAAAGACGCGATGCTGTTATCAGATTTAGAATCGCTGATTGAACCAGTGACGC
TGGGAGATCCAGAATCGCCTCTAAAATGGACTTCTAAAAGTGTAGTGAAACTGGCCGCGGCATTAAACATTGGCGGACATAGGACTAGTCCTAAAAGTGT
TTACAACTTACTTGAATCGCTGGGCTACAGCTTACAATCAAATCGTAAAACCCGTGATGGCTCATCTCATCCAGATAGGGACGACCAATTTTTACATATT
TCCAAGCAAGTCTTGCACTTTCAATCCCAGAACGAACCCGTAATTTCAGTGGATACTAAAAAAAAAGAATTAATTGGAGATTTTAAAAATTCCGGAACCG
AGTGGTGTGAGAAGGCACGGCCAATTGAGGTGAAGATGCATGATTTTGTTGACCCCAAATTGGGCAAAGCAATTCCCTACGGAATTTATGATTTAACCTC
AAATCAAGGATGGGTGAATGTTGGCATCGACCACGATACAGCAGAGTTTGCAGTCGAGTCTATTCGTCATTGGTGGTACTCAATGGGAAAAGAAGTTTAT
CCAAAAAGCCAGCATATAATGATTACGGCTGATTGCGGTGGTAGCAATAGTTATCGCTCTCGATTGTGGAAATTGAAGCTACAAGAATTAGCAACTGAAA
CTGGTAAAACTATTCATGTGTGCCATTTTCCTCCAGGCACAAGTAAATGGAATAAGATTGAGCATCGCTTGTTTTGTCACATTACCCAAAACTGGCGAGG
CAGACCATTGACCAGCTTACAAGTTGTGATTAATCTAATTCGCAATACTACCACCACACAAGGATTAGAAGTTGAGGCTAGATTAGATCCAAATCTCTAC
AAAACGGGAATCAAAGTTACAGACCAAGAGCTTGAGACTATTGCAATCGAACGAAATTCTTTTCATGGTGAGTGGAACTATATTATCAAACCCAAAGTAG
GCACTTAATTGTTCAGGTTATTTTTACATAACTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1233 bp410 aa761308+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSDNQVVESIQDKYDSLKPYLNEKTRRVWAAIEARSLGWGGISQVALATGLSRTTIHAGIRLLLEASEEETSNGDSNRIRSSGAGRKLLEEKDAMLLSDL
ESLIEPVTLGDPESPLKWTSKSVVKLAAALNIGGHRTSPKSVYNLLESLGYSLQSNRKTRDGSSHPDRDDQFLHISKQVLHFQSQNEPVISVDTKKKELI
GDFKNSGTEWCEKARPIEVKMHDFVDPKLGKAIPYGIYDLTSNQGWVNVGIDHDTAEFAVESIRHWWYSMGKEVYPKSQHIMITADCGGSNSYRSRLWKL
KLQELATETGKTIHVCHFPPGTSKWNKIEHRLFCHITQNWRGRPLTSLQVVINLIRNTTTTQGLEVEARLDPNLYKTGIKVTDQELETIAIERNSFHGEW
NYIIKPKVGT

 

Blast result :
Comments
ISNsp4 is 65% aa similar to ISArch16.
References
1] ISfinder annotation (2008)
2] Kaneko,T., Nakamura,Y., Wolk,C.P., Kuritz,T., Sasamoto,S., Watanabe,A., Iriguchi,M., Ishikawa,A., Kawashima,K., Kimura,T., Kishida,Y., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takazawa,M., Yamada,M., Yasuda,M. and Tabata,S. (2001) DNA Res. 8 (5), 205-213