ISNsp4
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003267 | ND | Nostoc sp. | Nostoc sp. PCC 7120 plasmid pCC7120gamma |
DNA section
IS Length : 1335 bp
Ends
IR Length : 25/31
IRL : GGCATCATGTAAAAATAACTTGAACGATTTACCGAATAGTTAGATCATCA
IRR : GGAGTTATGTAAAAATAACCTGAACAATTAAGTGCCTACTTTGGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGGTTCAAACTGAAG | TTA | GTTCATGGTCGCA | 3 |
DNA sequence
GGCATCATGTAAAAATAACTTGAACGATTTACCGAATAGTTAGATCATCAGAATGTAACCGAATTAAAGGCTTAGATGTCTGATAACCAAGTAGTAGAAA
GCATTCAAGACAAGTATGATTCGTTAAAGCCCTATTTGAACGAGAAAACACGGCGTGTTTGGGCAGCAATCGAAGCCCGAAGCCTGGGGTGGGGAGGTAT
CAGTCAGGTTGCGCTCGCAACTGGACTATCCCGGACTACAATCCATGCTGGGATAAGGTTATTGTTAGAAGCTTCAGAGGAAGAAACCTCGAATGGCGAT
AGTAATCGAATTCGTTCGTCAGGTGCTGGACGTAAACTACTGGAAGAAAAAGACGCGATGCTGTTATCAGATTTAGAATCGCTGATTGAACCAGTGACGC
TGGGAGATCCAGAATCGCCTCTAAAATGGACTTCTAAAAGTGTAGTGAAACTGGCCGCGGCATTAAACATTGGCGGACATAGGACTAGTCCTAAAAGTGT
TTACAACTTACTTGAATCGCTGGGCTACAGCTTACAATCAAATCGTAAAACCCGTGATGGCTCATCTCATCCAGATAGGGACGACCAATTTTTACATATT
TCCAAGCAAGTCTTGCACTTTCAATCCCAGAACGAACCCGTAATTTCAGTGGATACTAAAAAAAAAGAATTAATTGGAGATTTTAAAAATTCCGGAACCG
AGTGGTGTGAGAAGGCACGGCCAATTGAGGTGAAGATGCATGATTTTGTTGACCCCAAATTGGGCAAAGCAATTCCCTACGGAATTTATGATTTAACCTC
AAATCAAGGATGGGTGAATGTTGGCATCGACCACGATACAGCAGAGTTTGCAGTCGAGTCTATTCGTCATTGGTGGTACTCAATGGGAAAAGAAGTTTAT
CCAAAAAGCCAGCATATAATGATTACGGCTGATTGCGGTGGTAGCAATAGTTATCGCTCTCGATTGTGGAAATTGAAGCTACAAGAATTAGCAACTGAAA
CTGGTAAAACTATTCATGTGTGCCATTTTCCTCCAGGCACAAGTAAATGGAATAAGATTGAGCATCGCTTGTTTTGTCACATTACCCAAAACTGGCGAGG
CAGACCATTGACCAGCTTACAAGTTGTGATTAATCTAATTCGCAATACTACCACCACACAAGGATTAGAAGTTGAGGCTAGATTAGATCCAAATCTCTAC
AAAACGGGAATCAAAGTTACAGACCAAGAGCTTGAGACTATTGCAATCGAACGAAATTCTTTTCATGGTGAGTGGAACTATATTATCAAACCCAAAGTAG
GCACTTAATTGTTCAGGTTATTTTTACATAACTCC
GCATTCAAGACAAGTATGATTCGTTAAAGCCCTATTTGAACGAGAAAACACGGCGTGTTTGGGCAGCAATCGAAGCCCGAAGCCTGGGGTGGGGAGGTAT
CAGTCAGGTTGCGCTCGCAACTGGACTATCCCGGACTACAATCCATGCTGGGATAAGGTTATTGTTAGAAGCTTCAGAGGAAGAAACCTCGAATGGCGAT
AGTAATCGAATTCGTTCGTCAGGTGCTGGACGTAAACTACTGGAAGAAAAAGACGCGATGCTGTTATCAGATTTAGAATCGCTGATTGAACCAGTGACGC
TGGGAGATCCAGAATCGCCTCTAAAATGGACTTCTAAAAGTGTAGTGAAACTGGCCGCGGCATTAAACATTGGCGGACATAGGACTAGTCCTAAAAGTGT
TTACAACTTACTTGAATCGCTGGGCTACAGCTTACAATCAAATCGTAAAACCCGTGATGGCTCATCTCATCCAGATAGGGACGACCAATTTTTACATATT
TCCAAGCAAGTCTTGCACTTTCAATCCCAGAACGAACCCGTAATTTCAGTGGATACTAAAAAAAAAGAATTAATTGGAGATTTTAAAAATTCCGGAACCG
AGTGGTGTGAGAAGGCACGGCCAATTGAGGTGAAGATGCATGATTTTGTTGACCCCAAATTGGGCAAAGCAATTCCCTACGGAATTTATGATTTAACCTC
AAATCAAGGATGGGTGAATGTTGGCATCGACCACGATACAGCAGAGTTTGCAGTCGAGTCTATTCGTCATTGGTGGTACTCAATGGGAAAAGAAGTTTAT
CCAAAAAGCCAGCATATAATGATTACGGCTGATTGCGGTGGTAGCAATAGTTATCGCTCTCGATTGTGGAAATTGAAGCTACAAGAATTAGCAACTGAAA
CTGGTAAAACTATTCATGTGTGCCATTTTCCTCCAGGCACAAGTAAATGGAATAAGATTGAGCATCGCTTGTTTTGTCACATTACCCAAAACTGGCGAGG
CAGACCATTGACCAGCTTACAAGTTGTGATTAATCTAATTCGCAATACTACCACCACACAAGGATTAGAAGTTGAGGCTAGATTAGATCCAAATCTCTAC
AAAACGGGAATCAAAGTTACAGACCAAGAGCTTGAGACTATTGCAATCGAACGAAATTCTTTTCATGGTGAGTGGAACTATATTATCAAACCCAAAGTAG
GCACTTAATTGTTCAGGTTATTTTTACATAACTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1233 bp | 410 aa | 76 | 1308 | + | No |
Chemistry : Unknow
ORF sequence :
MSDNQVVESIQDKYDSLKPYLNEKTRRVWAAIEARSLGWGGISQVALATGLSRTTIHAGIRLLLEASEEETSNGDSNRIRSSGAGRKLLEEKDAMLLSDL
ESLIEPVTLGDPESPLKWTSKSVVKLAAALNIGGHRTSPKSVYNLLESLGYSLQSNRKTRDGSSHPDRDDQFLHISKQVLHFQSQNEPVISVDTKKKELI
GDFKNSGTEWCEKARPIEVKMHDFVDPKLGKAIPYGIYDLTSNQGWVNVGIDHDTAEFAVESIRHWWYSMGKEVYPKSQHIMITADCGGSNSYRSRLWKL
KLQELATETGKTIHVCHFPPGTSKWNKIEHRLFCHITQNWRGRPLTSLQVVINLIRNTTTTQGLEVEARLDPNLYKTGIKVTDQELETIAIERNSFHGEW
NYIIKPKVGT
ESLIEPVTLGDPESPLKWTSKSVVKLAAALNIGGHRTSPKSVYNLLESLGYSLQSNRKTRDGSSHPDRDDQFLHISKQVLHFQSQNEPVISVDTKKKELI
GDFKNSGTEWCEKARPIEVKMHDFVDPKLGKAIPYGIYDLTSNQGWVNVGIDHDTAEFAVESIRHWWYSMGKEVYPKSQHIMITADCGGSNSYRSRLWKL
KLQELATETGKTIHVCHFPPGTSKWNKIEHRLFCHITQNWRGRPLTSLQVVINLIRNTTTTQGLEVEARLDPNLYKTGIKVTDQELETIAIERNSFHGEW
NYIIKPKVGT
Blast result :
Comments
ISNsp4 is 65% aa similar to ISArch16.
References
1] ISfinder annotation (2008)
2] Kaneko,T., Nakamura,Y., Wolk,C.P., Kuritz,T., Sasamoto,S., Watanabe,A., Iriguchi,M., Ishikawa,A., Kawashima,K., Kimura,T., Kishida,Y., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takazawa,M., Yamada,M., Yasuda,M. and Tabata,S. (2001) DNA Res. 8 (5), 205-213
2] Kaneko,T., Nakamura,Y., Wolk,C.P., Kuritz,T., Sasamoto,S., Watanabe,A., Iriguchi,M., Ishikawa,A., Kawashima,K., Kimura,T., Kishida,Y., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takazawa,M., Yamada,M., Yasuda,M. and Tabata,S. (2001) DNA Res. 8 (5), 205-213