ISLsp4
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DS995259 | ND | Leptospirillum sp. | Leptospirillum sp. Group II '5-way CG' |
DNA section
IS Length : 1295 bp
Ends
IR Length : 18/25
IRL : GGAGTTGTAAAAAAATAATTGTAACTAATACATGGATTTTGCTATACTTT
IRR : GGGACTGTTAAAATATAAAGATAACAGTTCATCCGTCTCTGGGATGAAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGTTATAAACTCATGC | AAT | GATGACGTTTGACCG | 3 |
DNA sequence
GGAGTTGTAAAAAAATAATTGTAACTAATACATGGATTTTGCTATACTTTCCGCCATGGAGAAGAATCTGATCGCAGACCGATTCAACTTGCTGGCATGG
ACGTTGGATGAACGGTTGCGCCGAATTGTTTGTGCGGCCGAAGCCAAGGTGCTGGGCCACGGGGGTGTTACTGCCGTCTCCCAGGCCACTGGAGTCTCTC
GACGGGCCATCCATGCCGGACTGAGAGAGTTGGATGGGCGACCCGAGGAACCGGAGCCTTCCACTCAGAGGGTCCGACGACCGGGCGGAGGACGAAAAAA
GGTGACCGATCAGGACCCCACGCTCCTGACCGATCTGGAATCGCTGGTCGAGCCGGTGACGCGGGGAGACCCCGAATCGCCGCTGCGATGGACCACCAAA
AGCCTGCGACGACTGGCCAATGAGTTGAAGGCGATGGGCCATACCGTGAGCCATGCGTCCGTTGGAACACTGCTTGGGGAACTGGGCTACAGTCTTCAGT
CCAATGTCAAGACGCTGGAAGGCGGAGATCACCCGGACCGGAATGCCCAGTTCGAGTATATCAACGCCCAGGCCGAGGGTCGTCTGAAGCGGGGAGAACC
GGTCATCTCGGTCGATACCAAGAAAAAAGAACTCATCGGACCGTTCAAGAACAACGGACGGACATGGAGGCCCCAGGGAGAGCCCGAAGAGGTCAAGGTT
CACGACTTCATCGACAAGGAACTGGGGCGGGCCAACCCTTACGGAGTCTACGATCTGGCCCAGGATGAGGGATGGGTGAGCGTGGGGACCGATCACGACA
CGTCGGCGTTTGCCGTCCAGACGATCCGGAGATGGTGGCAAAGCGTGGGGTCGGAATCCTACCCTCATGCGACCGAACTTCTGATTACGGCGGATGGGGG
AGGAAGCAATGGTTCCCGCGTGCGCCTCTGGAAGGTCGAGATCCAGAAACTGGCGGACGAGATCGGGATTCCCATCACGATTTGTCATTTTCCTCCCGGA
ACCAGCAAGTGGAACAAGATCGAACATCGCCTGTTTTCGTTTATCAGCATGAACTGGAGAGGGCAACCGCTGGTCAGCCACGAAGTCCTTCTGAACCTGA
TTGCCAACACCCGGACGAAAAGCGGACTCACGGTCAAGGCCGAGCTGGATCCGGGGCACTACCCTAAAGGAGTCAAGATCTCTGACGAGGAGCTTGCCTC
CCTTCATCTGGTGCGTCACTCCTTCCATGGAGAATGGAATTATTCCCTTCATCCCAGAGACGGATGAACTGTTATCTTTATATTTTAACAGTCCC
ACGTTGGATGAACGGTTGCGCCGAATTGTTTGTGCGGCCGAAGCCAAGGTGCTGGGCCACGGGGGTGTTACTGCCGTCTCCCAGGCCACTGGAGTCTCTC
GACGGGCCATCCATGCCGGACTGAGAGAGTTGGATGGGCGACCCGAGGAACCGGAGCCTTCCACTCAGAGGGTCCGACGACCGGGCGGAGGACGAAAAAA
GGTGACCGATCAGGACCCCACGCTCCTGACCGATCTGGAATCGCTGGTCGAGCCGGTGACGCGGGGAGACCCCGAATCGCCGCTGCGATGGACCACCAAA
AGCCTGCGACGACTGGCCAATGAGTTGAAGGCGATGGGCCATACCGTGAGCCATGCGTCCGTTGGAACACTGCTTGGGGAACTGGGCTACAGTCTTCAGT
CCAATGTCAAGACGCTGGAAGGCGGAGATCACCCGGACCGGAATGCCCAGTTCGAGTATATCAACGCCCAGGCCGAGGGTCGTCTGAAGCGGGGAGAACC
GGTCATCTCGGTCGATACCAAGAAAAAAGAACTCATCGGACCGTTCAAGAACAACGGACGGACATGGAGGCCCCAGGGAGAGCCCGAAGAGGTCAAGGTT
CACGACTTCATCGACAAGGAACTGGGGCGGGCCAACCCTTACGGAGTCTACGATCTGGCCCAGGATGAGGGATGGGTGAGCGTGGGGACCGATCACGACA
CGTCGGCGTTTGCCGTCCAGACGATCCGGAGATGGTGGCAAAGCGTGGGGTCGGAATCCTACCCTCATGCGACCGAACTTCTGATTACGGCGGATGGGGG
AGGAAGCAATGGTTCCCGCGTGCGCCTCTGGAAGGTCGAGATCCAGAAACTGGCGGACGAGATCGGGATTCCCATCACGATTTGTCATTTTCCTCCCGGA
ACCAGCAAGTGGAACAAGATCGAACATCGCCTGTTTTCGTTTATCAGCATGAACTGGAGAGGGCAACCGCTGGTCAGCCACGAAGTCCTTCTGAACCTGA
TTGCCAACACCCGGACGAAAAGCGGACTCACGGTCAAGGCCGAGCTGGATCCGGGGCACTACCCTAAAGGAGTCAAGATCTCTGACGAGGAGCTTGCCTC
CCTTCATCTGGTGCGTCACTCCTTCCATGGAGAATGGAATTATTCCCTTCATCCCAGAGACGGATGAACTGTTATCTTTATATTTTAACAGTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1236 bp | 411 aa | 32 | 1267 | + | No |
Chemistry : Unknow
ORF sequence :
MDFAILSAMEKNLIADRFNLLAWTLDERLRRIVCAAEAKVLGHGGVTAVSQATGVSRRAIHAGLRELDGRPEEPEPSTQRVRRPGGGRKKVTDQDPTLLT
DLESLVEPVTRGDPESPLRWTTKSLRRLANELKAMGHTVSHASVGTLLGELGYSLQSNVKTLEGGDHPDRNAQFEYINAQAEGRLKRGEPVISVDTKKKE
LIGPFKNNGRTWRPQGEPEEVKVHDFIDKELGRANPYGVYDLAQDEGWVSVGTDHDTSAFAVQTIRRWWQSVGSESYPHATELLITADGGGSNGSRVRLW
KVEIQKLADEIGIPITICHFPPGTSKWNKIEHRLFSFISMNWRGQPLVSHEVLLNLIANTRTKSGLTVKAELDPGHYPKGVKISDEELASLHLVRHSFHG
EWNYSLHPRDG
DLESLVEPVTRGDPESPLRWTTKSLRRLANELKAMGHTVSHASVGTLLGELGYSLQSNVKTLEGGDHPDRNAQFEYINAQAEGRLKRGEPVISVDTKKKE
LIGPFKNNGRTWRPQGEPEEVKVHDFIDKELGRANPYGVYDLAQDEGWVSVGTDHDTSAFAVQTIRRWWQSVGSESYPHATELLITADGGGSNGSRVRLW
KVEIQKLADEIGIPITICHFPPGTSKWNKIEHRLFSFISMNWRGQPLVSHEVLLNLIANTRTKSGLTVKAELDPGHYPKGVKISDEELASLHLVRHSFHG
EWNYSLHPRDG
Blast result :
Comments
ISLsp4 is % aa similar to ISArch16.
References
1] ISfinder annotation (2008)
2] Simmons,S.L., Dibartolo,G., Denef,V.J., Goltsman,D.S., Thelen,M.P. and Banfield,J.F. (2008) PLoS Biol. 6 (7), E177
3] Tyson,G.W., Chapman,J., Hugenholtz,P., Allen,E.E., Ram,R.J., Richardson,P.M., Solovyev,V.V., Rubin,E.M., Rokhsar,D.S. and Banfield,J.F. (2004) Nature 428 (6978), 37-43
2] Simmons,S.L., Dibartolo,G., Denef,V.J., Goltsman,D.S., Thelen,M.P. and Banfield,J.F. (2008) PLoS Biol. 6 (7), E177
3] Tyson,G.W., Chapman,J., Hugenholtz,P., Allen,E.E., Ram,R.J., Richardson,P.M., Solovyev,V.V., Rubin,E.M., Rokhsar,D.S. and Banfield,J.F. (2004) Nature 428 (6978), 37-43