ISLsp4

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DS995259 ND Leptospirillum sp.
Leptospirillum sp. Group II '5-way CG'
DNA section
IS Length : 1295 bp

Ends


IR Length : 18/25

IRL : GGAGTTGTAAAAAAATAATTGTAACTAATACATGGATTTTGCTATACTTT
IRR : GGGACTGTTAAAATATAAAGATAACAGTTCATCCGTCTCTGGGATGAAGG

Insertion site


Left flankDirect repeatRight flankDR Length
ACGTTATAAACTCATGCAATGATGACGTTTGACCG3

DNA sequence

GGAGTTGTAAAAAAATAATTGTAACTAATACATGGATTTTGCTATACTTTCCGCCATGGAGAAGAATCTGATCGCAGACCGATTCAACTTGCTGGCATGG
ACGTTGGATGAACGGTTGCGCCGAATTGTTTGTGCGGCCGAAGCCAAGGTGCTGGGCCACGGGGGTGTTACTGCCGTCTCCCAGGCCACTGGAGTCTCTC
GACGGGCCATCCATGCCGGACTGAGAGAGTTGGATGGGCGACCCGAGGAACCGGAGCCTTCCACTCAGAGGGTCCGACGACCGGGCGGAGGACGAAAAAA
GGTGACCGATCAGGACCCCACGCTCCTGACCGATCTGGAATCGCTGGTCGAGCCGGTGACGCGGGGAGACCCCGAATCGCCGCTGCGATGGACCACCAAA
AGCCTGCGACGACTGGCCAATGAGTTGAAGGCGATGGGCCATACCGTGAGCCATGCGTCCGTTGGAACACTGCTTGGGGAACTGGGCTACAGTCTTCAGT
CCAATGTCAAGACGCTGGAAGGCGGAGATCACCCGGACCGGAATGCCCAGTTCGAGTATATCAACGCCCAGGCCGAGGGTCGTCTGAAGCGGGGAGAACC
GGTCATCTCGGTCGATACCAAGAAAAAAGAACTCATCGGACCGTTCAAGAACAACGGACGGACATGGAGGCCCCAGGGAGAGCCCGAAGAGGTCAAGGTT
CACGACTTCATCGACAAGGAACTGGGGCGGGCCAACCCTTACGGAGTCTACGATCTGGCCCAGGATGAGGGATGGGTGAGCGTGGGGACCGATCACGACA
CGTCGGCGTTTGCCGTCCAGACGATCCGGAGATGGTGGCAAAGCGTGGGGTCGGAATCCTACCCTCATGCGACCGAACTTCTGATTACGGCGGATGGGGG
AGGAAGCAATGGTTCCCGCGTGCGCCTCTGGAAGGTCGAGATCCAGAAACTGGCGGACGAGATCGGGATTCCCATCACGATTTGTCATTTTCCTCCCGGA
ACCAGCAAGTGGAACAAGATCGAACATCGCCTGTTTTCGTTTATCAGCATGAACTGGAGAGGGCAACCGCTGGTCAGCCACGAAGTCCTTCTGAACCTGA
TTGCCAACACCCGGACGAAAAGCGGACTCACGGTCAAGGCCGAGCTGGATCCGGGGCACTACCCTAAAGGAGTCAAGATCTCTGACGAGGAGCTTGCCTC
CCTTCATCTGGTGCGTCACTCCTTCCATGGAGAATGGAATTATTCCCTTCATCCCAGAGACGGATGAACTGTTATCTTTATATTTTAACAGTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1236 bp411 aa321267+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MDFAILSAMEKNLIADRFNLLAWTLDERLRRIVCAAEAKVLGHGGVTAVSQATGVSRRAIHAGLRELDGRPEEPEPSTQRVRRPGGGRKKVTDQDPTLLT
DLESLVEPVTRGDPESPLRWTTKSLRRLANELKAMGHTVSHASVGTLLGELGYSLQSNVKTLEGGDHPDRNAQFEYINAQAEGRLKRGEPVISVDTKKKE
LIGPFKNNGRTWRPQGEPEEVKVHDFIDKELGRANPYGVYDLAQDEGWVSVGTDHDTSAFAVQTIRRWWQSVGSESYPHATELLITADGGGSNGSRVRLW
KVEIQKLADEIGIPITICHFPPGTSKWNKIEHRLFSFISMNWRGQPLVSHEVLLNLIANTRTKSGLTVKAELDPGHYPKGVKISDEELASLHLVRHSFHG
EWNYSLHPRDG

 

Blast result :
Comments
ISLsp4 is % aa similar to ISArch16.
References
1] ISfinder annotation (2008)
2] Simmons,S.L., Dibartolo,G., Denef,V.J., Goltsman,D.S., Thelen,M.P. and Banfield,J.F. (2008) PLoS Biol. 6 (7), E177
3] Tyson,G.W., Chapman,J., Hugenholtz,P., Allen,E.E., Ram,R.J., Richardson,P.M., Solovyev,V.V., Rubin,E.M., Rokhsar,D.S. and Banfield,J.F. (2004) Nature 428 (6978), 37-43