ISCph5
- Family ISAzo13
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010831 | ND | Chlorobium phaeobacteroides | Chlorobium phaeobacteroides BS1 |
DNA section
IS Length : 1312 bp
Ends
IR Length : 27/36
IRL : GAAACTGTTAATAAATAACTATAACGAATAAAGGAAAGTGTTATATTGTC
IRR : GGATCTGTTAACAAATAAACAGAACAAATTCAGGAATCATGCGGGTCAAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGATTTGTATTATGCAG | TTA | GTTAATAAAGCCAG | 3 |
| TGTTAGGGGTTAGGTGC | TAA | GTGGGGAATGGGGA | 3 |
DNA sequence
GAAACTGTTAATAAATAACTATAACGAATAAAGGAAAGTGTTATATTGTCATCATGAAGACACATGATGACGAAATAACGCTGATCCGCATCAAATTTGA
GAAAATTGCATGGGCTCTGGACGAGCGCATGAGGCGCCTTTTTGCAGCAGCTGAGGCATTTGCCCTGGGCCGGGGCGGCGTCACAAAGGTTTCCAAGGCT
ACGGGTGTTTCCCGCCGAGCGATTCATGCTGGACTGGATGAGTTGGCTGCCGAAAAATTACCGGTTGCAAACCAGGAAAAACGCATCCGGAAAGCTGGTG
CCGGCAGAAAATCCATTACTGAAACCGACCCCGGCGTTCTCGCCGCGCTGGAAAAGCTTGTTGAGCCGACGACTCGGGGTGACCCTGAATCTCCTCTTCG
CTGGACCTGCAAAAGTTTGCGCACGATCTCTGATGAGTTGCGCGTACAGGGTTACTCGGTAAGCTATCCAAAAGTTGGTGATCTGCTCCAGCATGAGTTG
GGTTATAGCTTGCAGGCGAATAGAAAAACGCTCGAAGGGACTGCTCATCCTGACCGAAACGCTCAATTTGAGTTTATCAACCGGGAAGCAGCGGAATGCA
TGGCCGGAGACAACCCTGTTATTTCGGTTGATACCAAGAAGAAAGAACTCGTTGGTGCCTACAAGAATAACGGTACGAATTGGCGTCCTCAGGGAGAACC
TGAATCAGTCAAGGTTCATGACTTCATCGACAAAGAACTCGGGAGGGCAAATCCTTACGGTGTCTACGATGTGGCAAGCAACACGGGATGGGTCAGTGTA
GGGACGGATCACGATACGGCCAGTTTTGCTGTTGAAACCATTCGCCGTTGGTGGAATACCATGGGCAAGCCGCGGTATCCAAAGGCCTCGAAGCTCATGA
TTACGGCCGATGGCGGAGGAAGTAACGGCAACAGGGTGCGACTATGGAAACTGGAACTCCAAAAATTGGCTGATGAGATACATATCCCGGTTCATGTTGC
TCATCTGCCTCCCGGCACGAGCAAATGGAACAAAATCGAGCATCGTCTGTTCTCGTACATCAGCATGAATTGGCGTGGCCAACCCTTGATCAGTCATGAG
GTGATTATCAATCTGATAGCGGGAACTACAACAAAAAAAGGACTGAAAGTGCATGCTGAACTGGATGACTCCCTGTACCCATCAGGCATTAAAGTCAGCG
ATAAGGAGTTTGAAGCGATCCGGATCACACGAAATGAATTTCATGGCGAGTGGAACTACAGGATTGACCCGCATGATTCCTGAATTTGTTCTGTTTATTT
GTTAACAGATCC
GAAAATTGCATGGGCTCTGGACGAGCGCATGAGGCGCCTTTTTGCAGCAGCTGAGGCATTTGCCCTGGGCCGGGGCGGCGTCACAAAGGTTTCCAAGGCT
ACGGGTGTTTCCCGCCGAGCGATTCATGCTGGACTGGATGAGTTGGCTGCCGAAAAATTACCGGTTGCAAACCAGGAAAAACGCATCCGGAAAGCTGGTG
CCGGCAGAAAATCCATTACTGAAACCGACCCCGGCGTTCTCGCCGCGCTGGAAAAGCTTGTTGAGCCGACGACTCGGGGTGACCCTGAATCTCCTCTTCG
CTGGACCTGCAAAAGTTTGCGCACGATCTCTGATGAGTTGCGCGTACAGGGTTACTCGGTAAGCTATCCAAAAGTTGGTGATCTGCTCCAGCATGAGTTG
GGTTATAGCTTGCAGGCGAATAGAAAAACGCTCGAAGGGACTGCTCATCCTGACCGAAACGCTCAATTTGAGTTTATCAACCGGGAAGCAGCGGAATGCA
TGGCCGGAGACAACCCTGTTATTTCGGTTGATACCAAGAAGAAAGAACTCGTTGGTGCCTACAAGAATAACGGTACGAATTGGCGTCCTCAGGGAGAACC
TGAATCAGTCAAGGTTCATGACTTCATCGACAAAGAACTCGGGAGGGCAAATCCTTACGGTGTCTACGATGTGGCAAGCAACACGGGATGGGTCAGTGTA
GGGACGGATCACGATACGGCCAGTTTTGCTGTTGAAACCATTCGCCGTTGGTGGAATACCATGGGCAAGCCGCGGTATCCAAAGGCCTCGAAGCTCATGA
TTACGGCCGATGGCGGAGGAAGTAACGGCAACAGGGTGCGACTATGGAAACTGGAACTCCAAAAATTGGCTGATGAGATACATATCCCGGTTCATGTTGC
TCATCTGCCTCCCGGCACGAGCAAATGGAACAAAATCGAGCATCGTCTGTTCTCGTACATCAGCATGAATTGGCGTGGCCAACCCTTGATCAGTCATGAG
GTGATTATCAATCTGATAGCGGGAACTACAACAAAAAAAGGACTGAAAGTGCATGCTGAACTGGATGACTCCCTGTACCCATCAGGCATTAAAGTCAGCG
ATAAGGAGTTTGAAGCGATCCGGATCACACGAAATGAATTTCATGGCGAGTGGAACTACAGGATTGACCCGCATGATTCCTGAATTTGTTCTGTTTATTT
GTTAACAGATCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1230 bp | 409 aa | 54 | 1283 | + | No |
Chemistry : Unknow
ORF sequence :
MKTHDDEITLIRIKFEKIAWALDERMRRLFAAAEAFALGRGGVTKVSKATGVSRRAIHAGLDELAAEKLPVANQEKRIRKAGAGRKSITETDPGVLAALE
KLVEPTTRGDPESPLRWTCKSLRTISDELRVQGYSVSYPKVGDLLQHELGYSLQANRKTLEGTAHPDRNAQFEFINREAAECMAGDNPVISVDTKKKELV
GAYKNNGTNWRPQGEPESVKVHDFIDKELGRANPYGVYDVASNTGWVSVGTDHDTASFAVETIRRWWNTMGKPRYPKASKLMITADGGGSNGNRVRLWKL
ELQKLADEIHIPVHVAHLPPGTSKWNKIEHRLFSYISMNWRGQPLISHEVIINLIAGTTTKKGLKVHAELDDSLYPSGIKVSDKEFEAIRITRNEFHGEW
NYRIDPHDS
KLVEPTTRGDPESPLRWTCKSLRTISDELRVQGYSVSYPKVGDLLQHELGYSLQANRKTLEGTAHPDRNAQFEFINREAAECMAGDNPVISVDTKKKELV
GAYKNNGTNWRPQGEPESVKVHDFIDKELGRANPYGVYDVASNTGWVSVGTDHDTASFAVETIRRWWNTMGKPRYPKASKLMITADGGGSNGNRVRLWKL
ELQKLADEIHIPVHVAHLPPGTSKWNKIEHRLFSYISMNWRGQPLISHEVIINLIAGTTTKKGLKVHAELDDSLYPSGIKVSDKEFEAIRITRNEFHGEW
NYRIDPHDS
Blast result :
Comments
ISCph5 is 66% aa similar to ISArch16.
References
1] ISfinder annotation (2008)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. (2008) Direct submission GenBank.