ISStsp2
- Family ISAzo13
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABJF01000002 | ND | Streptomyces sp. | Streptomyces sp. Mg |
DNA section
IS Length : 1752 bp
Ends
IR Length : 23/28
IRL : GGCTCGCAGAGAATCGAAGTGTTGCTTCCAGCGGTTCGGCTCGTTGGCGT
IRR : GGCTCGCAGAGAATCAACATGCTGACTTGATCTCTGTGGGGTTGCTGTTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAGCTCGTTG | CTTAGGGGTGTGG | 0 |
DNA sequence
GGCTCGCAGAGAATCGAAGTGTTGCTTCCAGCGGTTCGGCTCGTTGGCGTGGTATGTGCATATCTGGCGAGGTCCGTGATCAACTCGGCCTGAAGTTCGC
AGTGTTGTTCCCACATCTGGACGAGCGGCAGCGCCGTCTGCTGATGGGGGCTGAGGCCCGGGTCCTGGGACACGGCGGGATCCGGGCGGTCGCCCAGGCG
GCCCAAGTCAGCGAGACCACAGTCCGCAAGGGCGTGGACGAGTTGGAGGACGGGGCGGAACCGCTGGGCCGGATCCGCCGCCCAGGTGGCGGGCGCAAGC
GGGCGGCCGAGGCGGATCCAGAACTGCGGCCCGCACTGTTGGCGCTGGTCGAGCCCGACATGCGCGGGGATCCGATGTCGCCGCTGCGCTGGACGACGAA
GTCCACCCGCAGACTCGCCGACGAGCTCACCAGGCAGGGCCACCGTGTCTCGGCGGATACCGTCGCCGACCTTCTGCGGGAGGAGGGATTCAGCCTCCAG
GCCAACGCCAAGACCCTCGAGGGTGCCCAGCATCCCGACCGGGATGCCCAGTTCCACTACATCAACGACCGGGCCAAGGAGCACATGGGCGCCGGCGACC
CGGTGATCAGCGTGGACACCAAGAAGAAGGAACTGGTCGGCCCCTACAAGAACGGGGGCCGTGAGTGGGAGCCGAAGGGAGCTCCGGCCCAGGTCAAGAC
CCATGACTTCCTGGACCGGCAGGGACCCGGCAAAGCGATCGCTTACGGGATCTACGACGTCGCCGCGAACACCGGCTGGGTCAGCGTCGGCACCGACCAC
GACACGGCCGCCTTCGCCGTTGCCTCGATCCGCCGCTGGTGGCAAGCCCGTGGCAGTCACGACTACCCTCAGGCCGCCCGGCTGCTGATCACCGCGGACG
CGGGCGGCTCCAACGGATACCGCACCCGCGCCTGGAAGACCGAACTTGCCACCCTGGCCGCCGAGACGGGCTTGGAGATCACGGTCTGCCACATGCCTCC
GGGCACCTCAAAGTGGAACAAGATCGAGCACCGGCTGTTCTCCCACATCTCCATGAACTGGCGCGGCAGGCCCCTGACCAGCCACGACGTCATCGTGAAC
AGCATCATGGCGACCACTACCCACACTGGGCTGAGAGTCCACGCGGAACTCGACCCGGGCACCTACGACACCGGCATCAAGGTCACCGACACAGACATCG
ACGCACTACCCATGCACCGCCACCGCTTCCACGGCGACTGGAACTACACCCTCCATCCACAACACGGCGACACGGCCGGCGCGGCCGAGGACCCGCGGTC
AGCCGAGGGCCTGCCGCCTCAGTCCCGCGCCAGCGGTCTGCGCAACCCGGAACTGACCGGCATGACCGAACCGGCACTGGACGAACTCGTCGACCAGCTG
TCTCAGAAACTCGATGAGCTACGTGAACACGGGCGGTCACAGCAGCGAGGAGGAGACCGTATCCGGGCTCGCGGAGCCGGCGCCAAGGACAAGCTGACCA
CCGCCGACCGAGTCCTGGCCGCCGTTCTCTACCTGCGTAAACTCGGCACCCGAGACCTGATCGCCCAACTCTTCGGCGTCAACGGGAGCACCATCACCAG
GGCCGTTCACCACATCCAGCCCCTCCTCGCCGATCACGGCTGCACCGTTCGACCCTCGACAGCCAGGTTCCGCACACCCGCTGACGTCACCGCGTTCCTC
ACGAACAGCAACCCCACAGAGATCAAGTCAGCATGTTGATTCTCTGCGAGCC
AGTGTTGTTCCCACATCTGGACGAGCGGCAGCGCCGTCTGCTGATGGGGGCTGAGGCCCGGGTCCTGGGACACGGCGGGATCCGGGCGGTCGCCCAGGCG
GCCCAAGTCAGCGAGACCACAGTCCGCAAGGGCGTGGACGAGTTGGAGGACGGGGCGGAACCGCTGGGCCGGATCCGCCGCCCAGGTGGCGGGCGCAAGC
GGGCGGCCGAGGCGGATCCAGAACTGCGGCCCGCACTGTTGGCGCTGGTCGAGCCCGACATGCGCGGGGATCCGATGTCGCCGCTGCGCTGGACGACGAA
GTCCACCCGCAGACTCGCCGACGAGCTCACCAGGCAGGGCCACCGTGTCTCGGCGGATACCGTCGCCGACCTTCTGCGGGAGGAGGGATTCAGCCTCCAG
GCCAACGCCAAGACCCTCGAGGGTGCCCAGCATCCCGACCGGGATGCCCAGTTCCACTACATCAACGACCGGGCCAAGGAGCACATGGGCGCCGGCGACC
CGGTGATCAGCGTGGACACCAAGAAGAAGGAACTGGTCGGCCCCTACAAGAACGGGGGCCGTGAGTGGGAGCCGAAGGGAGCTCCGGCCCAGGTCAAGAC
CCATGACTTCCTGGACCGGCAGGGACCCGGCAAAGCGATCGCTTACGGGATCTACGACGTCGCCGCGAACACCGGCTGGGTCAGCGTCGGCACCGACCAC
GACACGGCCGCCTTCGCCGTTGCCTCGATCCGCCGCTGGTGGCAAGCCCGTGGCAGTCACGACTACCCTCAGGCCGCCCGGCTGCTGATCACCGCGGACG
CGGGCGGCTCCAACGGATACCGCACCCGCGCCTGGAAGACCGAACTTGCCACCCTGGCCGCCGAGACGGGCTTGGAGATCACGGTCTGCCACATGCCTCC
GGGCACCTCAAAGTGGAACAAGATCGAGCACCGGCTGTTCTCCCACATCTCCATGAACTGGCGCGGCAGGCCCCTGACCAGCCACGACGTCATCGTGAAC
AGCATCATGGCGACCACTACCCACACTGGGCTGAGAGTCCACGCGGAACTCGACCCGGGCACCTACGACACCGGCATCAAGGTCACCGACACAGACATCG
ACGCACTACCCATGCACCGCCACCGCTTCCACGGCGACTGGAACTACACCCTCCATCCACAACACGGCGACACGGCCGGCGCGGCCGAGGACCCGCGGTC
AGCCGAGGGCCTGCCGCCTCAGTCCCGCGCCAGCGGTCTGCGCAACCCGGAACTGACCGGCATGACCGAACCGGCACTGGACGAACTCGTCGACCAGCTG
TCTCAGAAACTCGATGAGCTACGTGAACACGGGCGGTCACAGCAGCGAGGAGGAGACCGTATCCGGGCTCGCGGAGCCGGCGCCAAGGACAAGCTGACCA
CCGCCGACCGAGTCCTGGCCGCCGTTCTCTACCTGCGTAAACTCGGCACCCGAGACCTGATCGCCCAACTCTTCGGCGTCAACGGGAGCACCATCACCAG
GGCCGTTCACCACATCCAGCCCCTCCTCGCCGATCACGGCTGCACCGTTCGACCCTCGACAGCCAGGTTCCGCACACCCGCTGACGTCACCGCGTTCCTC
ACGAACAGCAACCCCACAGAGATCAAGTCAGCATGTTGATTCTCTGCGAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1596 bp | 531 aa | 144 | 1739 | + | No |
Chemistry : Unknow
ORF sequence :
MGAEARVLGHGGIRAVAQAAQVSETTVRKGVDELEDGAEPLGRIRRPGGGRKRAAEADPELRPALLALVEPDMRGDPMSPLRWTTKSTRRLADELTRQGH
RVSADTVADLLREEGFSLQANAKTLEGAQHPDRDAQFHYINDRAKEHMGAGDPVISVDTKKKELVGPYKNGGREWEPKGAPAQVKTHDFLDRQGPGKAIA
YGIYDVAANTGWVSVGTDHDTAAFAVASIRRWWQARGSHDYPQAARLLITADAGGSNGYRTRAWKTELATLAAETGLEITVCHMPPGTSKWNKIEHRLFS
HISMNWRGRPLTSHDVIVNSIMATTTHTGLRVHAELDPGTYDTGIKVTDTDIDALPMHRHRFHGDWNYTLHPQHGDTAGAAEDPRSAEGLPPQSRASGLR
NPELTGMTEPALDELVDQLSQKLDELREHGRSQQRGGDRIRARGAGAKDKLTTADRVLAAVLYLRKLGTRDLIAQLFGVNGSTITRAVHHIQPLLADHGC
TVRPSTARFRTPADVTAFLTNSNPTEIKSAC
RVSADTVADLLREEGFSLQANAKTLEGAQHPDRDAQFHYINDRAKEHMGAGDPVISVDTKKKELVGPYKNGGREWEPKGAPAQVKTHDFLDRQGPGKAIA
YGIYDVAANTGWVSVGTDHDTAAFAVASIRRWWQARGSHDYPQAARLLITADAGGSNGYRTRAWKTELATLAAETGLEITVCHMPPGTSKWNKIEHRLFS
HISMNWRGRPLTSHDVIVNSIMATTTHTGLRVHAELDPGTYDTGIKVTDTDIDALPMHRHRFHGDWNYTLHPQHGDTAGAAEDPRSAEGLPPQSRASGLR
NPELTGMTEPALDELVDQLSQKLDELREHGRSQQRGGDRIRARGAGAKDKLTTADRVLAAVLYLRKLGTRDLIAQLFGVNGSTITRAVHHIQPLLADHGC
TVRPSTARFRTPADVTAFLTNSNPTEIKSAC
Blast result :
Comments
ISStsp2 is % aa similar to ISArch16.
References
1] ISfinder annotation (2008)
2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Mehta,T., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.
2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Mehta,T., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.