ISFsp12
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009921 | ND | Frankia sp. | Frankia sp. EAN1pec |
DNA section
IS Length : 1730 bp
Ends
IR Length : 25/32
IRL : GGAGCTGCCGGAAAATAACTTCGGTCTTTGATCTACGTCGGAGATCGTGG
IRR : GGAGTCGCCGATTAATAACTTCTGTTTTTGATGTTGCTTGGATCGATCAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCCCACGGCCGACCCGCAG | CTGGGGTCGACCCGGCCGCC | 0 | |
TGAGACGGATCACCCTC | CAG | GGCTCCGGCATGTTGGG | 3 |
DNA sequence
GGAGCTGCCGGAAAATAACTTCGGTCTTTGATCTACGTCGGAGATCGTGGGACGCTCCGGCACGTGGAGCGGGTTGACGAGGTGGTGCTCGCGGAGAAGT
TCACCGTGTTGTTGCCGCATCTGGACGAGCGACAGCGCCGGCTGGTGCTGGGAGCGGACGCGCGGGCGCTCGGGCATGGTGGGATCCGGTTGGTGGCCCG
GGCAGCCGGGGTATCAGCGGACACGGTCTCGCGTGGCGTCGCCGAGCTGGAGTCCGGCGCGGCCTCGACGGGCCGGGTGCGTGTGCCGGGTGCGGGCCGC
AAGGCGCTGCGGGAGAAGGACTCGGAGCTGGTGGCGGCGCTGATGGCGCTGGTCGAGCCCGACCAGCGGGGTGATCCGGAATCGCCGTTGCGATGGACAG
TGAAGTCCACCCGCCGGCTCGCCGAGCAGCTGACCACGGATGGGCATCCGGTCGGCGCGGACACGGTCGGCGCGCTGCTGCGCGCGGAGGGGTTCAGTCT
GCAGGGCACCTCACGCACGACCGAGGGCGCGCGTCACCCTGACCGAGACGGCCAGTTCTCCTACATCAACGAGCGGGTCAAGGACTTCATCGCGGCCGGA
CAGCCGGTCGTCAGCGTCGACACGAAGAAGAAGGAAGTCCTCGGTGACTACGCCGTCGCCGGCCGGGAATGGCACCGCGCCGGCCAGCCGGTACGGGTCC
GCGCCCATGACTTCCCCGAGAAGAACGCCCAGAAAGCGGTGCCCTACGGCATCTACGACCTCACCGCCGACACCGGCTGGGTGTCGGTCGGCTGCGACGG
CGACACCGCCGCGTTCGCGGTCGCGACCCTGCGCCGCTGGTGGGACGGCGAAGGCCGCCACCGCTACCCGACCGCAACCCGGCTGCTGATCACAGCGGAT
GCCGGCGGCGCGAACGGCTACCGGGTACGTGCCTGGAAGAAGGAACTCGCCGATCTCGCCCGCACGGCCAACCTTCAGATCACCGTGTGCCACTTCCCGC
CGGGTACCTCGAAATGGAACAAGATCGAGCACCGGTTGTTCTCCCGGATCAGCACGAACTGGCGCGGCCGCCCCCTGACCAGCCACGAGGTCGTGGTCAA
CACCATCGGTGCGACGACGACACGCACCGGGCTGAGCGTCCACGCCGAGCTCGACCCCGGCGCCTACCCGACCGGGCTGACCGTGCCCGACGAGGTCATG
GACGCCCTACCGCTGACGGCCCATGACTGGCACGGCCAGTGGAACTACACCCTCGTACCGGCGCCACCCCGCACCGTCTCGACGCCGGCGTCCCGGTATG
TCGAGACCGGCCAGCCCGACGACCGTGCCCCGGACTGGCTGCACCATCCGACCATCACCGGCATGAACCCGGGCGAGTTCACCGCCCTGCTCGCCGCCGC
CGAGCAGTACATCCTCGACCACCCACCGATCAGCCTGCACCACAAGCACGCCCGCCACCGCGTCCTGCGGCGCGGGCCCCTGTCGCTGTCCGACCGGCTG
CTCGTCACCCTGATCCACCATCGTTGGAAGACCCAGCAGCAGGCCCTCACCCGCCTGCTGGGTTCACCACGCGGCGCTGTCGGCGACGCGATCCACGAGA
TGACCCCAGTCCTGGACGGCCTCGACCGGAGGATCCAACCCGCGCCGATCACCGCGCCCACCGTCCAGGACCTCACCAGCCTGATCGATCCAAGCAACAT
CAAAAACAGAAGTTATTAATCGGCGACTCC
TCACCGTGTTGTTGCCGCATCTGGACGAGCGACAGCGCCGGCTGGTGCTGGGAGCGGACGCGCGGGCGCTCGGGCATGGTGGGATCCGGTTGGTGGCCCG
GGCAGCCGGGGTATCAGCGGACACGGTCTCGCGTGGCGTCGCCGAGCTGGAGTCCGGCGCGGCCTCGACGGGCCGGGTGCGTGTGCCGGGTGCGGGCCGC
AAGGCGCTGCGGGAGAAGGACTCGGAGCTGGTGGCGGCGCTGATGGCGCTGGTCGAGCCCGACCAGCGGGGTGATCCGGAATCGCCGTTGCGATGGACAG
TGAAGTCCACCCGCCGGCTCGCCGAGCAGCTGACCACGGATGGGCATCCGGTCGGCGCGGACACGGTCGGCGCGCTGCTGCGCGCGGAGGGGTTCAGTCT
GCAGGGCACCTCACGCACGACCGAGGGCGCGCGTCACCCTGACCGAGACGGCCAGTTCTCCTACATCAACGAGCGGGTCAAGGACTTCATCGCGGCCGGA
CAGCCGGTCGTCAGCGTCGACACGAAGAAGAAGGAAGTCCTCGGTGACTACGCCGTCGCCGGCCGGGAATGGCACCGCGCCGGCCAGCCGGTACGGGTCC
GCGCCCATGACTTCCCCGAGAAGAACGCCCAGAAAGCGGTGCCCTACGGCATCTACGACCTCACCGCCGACACCGGCTGGGTGTCGGTCGGCTGCGACGG
CGACACCGCCGCGTTCGCGGTCGCGACCCTGCGCCGCTGGTGGGACGGCGAAGGCCGCCACCGCTACCCGACCGCAACCCGGCTGCTGATCACAGCGGAT
GCCGGCGGCGCGAACGGCTACCGGGTACGTGCCTGGAAGAAGGAACTCGCCGATCTCGCCCGCACGGCCAACCTTCAGATCACCGTGTGCCACTTCCCGC
CGGGTACCTCGAAATGGAACAAGATCGAGCACCGGTTGTTCTCCCGGATCAGCACGAACTGGCGCGGCCGCCCCCTGACCAGCCACGAGGTCGTGGTCAA
CACCATCGGTGCGACGACGACACGCACCGGGCTGAGCGTCCACGCCGAGCTCGACCCCGGCGCCTACCCGACCGGGCTGACCGTGCCCGACGAGGTCATG
GACGCCCTACCGCTGACGGCCCATGACTGGCACGGCCAGTGGAACTACACCCTCGTACCGGCGCCACCCCGCACCGTCTCGACGCCGGCGTCCCGGTATG
TCGAGACCGGCCAGCCCGACGACCGTGCCCCGGACTGGCTGCACCATCCGACCATCACCGGCATGAACCCGGGCGAGTTCACCGCCCTGCTCGCCGCCGC
CGAGCAGTACATCCTCGACCACCCACCGATCAGCCTGCACCACAAGCACGCCCGCCACCGCGTCCTGCGGCGCGGGCCCCTGTCGCTGTCCGACCGGCTG
CTCGTCACCCTGATCCACCATCGTTGGAAGACCCAGCAGCAGGCCCTCACCCGCCTGCTGGGTTCACCACGCGGCGCTGTCGGCGACGCGATCCACGAGA
TGACCCCAGTCCTGGACGGCCTCGACCGGAGGATCCAACCCGCGCCGATCACCGCGCCCACCGTCCAGGACCTCACCAGCCTGATCGATCCAAGCAACAT
CAAAAACAGAAGTTATTAATCGGCGACTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1635 bp | 544 aa | 85 | 1719 | + | No |
Chemistry : Unknow
ORF sequence :
MLAEKFTVLLPHLDERQRRLVLGADARALGHGGIRLVARAAGVSADTVSRGVAELESGAASTGRVRVPGAGRKALREKDSELVAALMALVEPDQRGDPES
PLRWTVKSTRRLAEQLTTDGHPVGADTVGALLRAEGFSLQGTSRTTEGARHPDRDGQFSYINERVKDFIAAGQPVVSVDTKKKEVLGDYAVAGREWHRAG
QPVRVRAHDFPEKNAQKAVPYGIYDLTADTGWVSVGCDGDTAAFAVATLRRWWDGEGRHRYPTATRLLITADAGGANGYRVRAWKKELADLARTANLQIT
VCHFPPGTSKWNKIEHRLFSRISTNWRGRPLTSHEVVVNTIGATTTRTGLSVHAELDPGAYPTGLTVPDEVMDALPLTAHDWHGQWNYTLVPAPPRTVST
PASRYVETGQPDDRAPDWLHHPTITGMNPGEFTALLAAAEQYILDHPPISLHHKHARHRVLRRGPLSLSDRLLVTLIHHRWKTQQQALTRLLGSPRGAVG
DAIHEMTPVLDGLDRRIQPAPITAPTVQDLTSLIDPSNIKNRSY
PLRWTVKSTRRLAEQLTTDGHPVGADTVGALLRAEGFSLQGTSRTTEGARHPDRDGQFSYINERVKDFIAAGQPVVSVDTKKKEVLGDYAVAGREWHRAG
QPVRVRAHDFPEKNAQKAVPYGIYDLTADTGWVSVGCDGDTAAFAVATLRRWWDGEGRHRYPTATRLLITADAGGANGYRVRAWKKELADLARTANLQIT
VCHFPPGTSKWNKIEHRLFSRISTNWRGRPLTSHEVVVNTIGATTTRTGLSVHAELDPGAYPTGLTVPDEVMDALPLTAHDWHGQWNYTLVPAPPRTVST
PASRYVETGQPDDRAPDWLHHPTITGMNPGEFTALLAAAEQYILDHPPISLHHKHARHRVLRRGPLSLSDRLLVTLIHHRWKTQQQALTRLLGSPRGAVG
DAIHEMTPVLDGLDRRIQPAPITAPTVQDLTSLIDPSNIKNRSY
Blast result :
Comments
ISFsp12 is 61% aa similar to ISArch16.
References
1] ISfinder annotation (2008)
2] Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N., Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N., Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N., Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L., Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E., Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z., Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D., Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R. (2007) Genome Res. 17 (1), 7-15
2] Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N., Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N., Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N., Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L., Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E., Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z., Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D., Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R. (2007) Genome Res. 17 (1), 7-15