ISFsp12

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009921 ND Frankia sp.
Frankia sp. EAN1pec
DNA section
IS Length : 1730 bp

Ends


IR Length : 25/32

IRL : GGAGCTGCCGGAAAATAACTTCGGTCTTTGATCTACGTCGGAGATCGTGG
IRR : GGAGTCGCCGATTAATAACTTCTGTTTTTGATGTTGCTTGGATCGATCAG

Insertion site


Left flankDirect repeatRight flankDR Length
CGCCCACGGCCGACCCGCAGCTGGGGTCGACCCGGCCGCC0
TGAGACGGATCACCCTCCAGGGCTCCGGCATGTTGGG3

DNA sequence

GGAGCTGCCGGAAAATAACTTCGGTCTTTGATCTACGTCGGAGATCGTGGGACGCTCCGGCACGTGGAGCGGGTTGACGAGGTGGTGCTCGCGGAGAAGT
TCACCGTGTTGTTGCCGCATCTGGACGAGCGACAGCGCCGGCTGGTGCTGGGAGCGGACGCGCGGGCGCTCGGGCATGGTGGGATCCGGTTGGTGGCCCG
GGCAGCCGGGGTATCAGCGGACACGGTCTCGCGTGGCGTCGCCGAGCTGGAGTCCGGCGCGGCCTCGACGGGCCGGGTGCGTGTGCCGGGTGCGGGCCGC
AAGGCGCTGCGGGAGAAGGACTCGGAGCTGGTGGCGGCGCTGATGGCGCTGGTCGAGCCCGACCAGCGGGGTGATCCGGAATCGCCGTTGCGATGGACAG
TGAAGTCCACCCGCCGGCTCGCCGAGCAGCTGACCACGGATGGGCATCCGGTCGGCGCGGACACGGTCGGCGCGCTGCTGCGCGCGGAGGGGTTCAGTCT
GCAGGGCACCTCACGCACGACCGAGGGCGCGCGTCACCCTGACCGAGACGGCCAGTTCTCCTACATCAACGAGCGGGTCAAGGACTTCATCGCGGCCGGA
CAGCCGGTCGTCAGCGTCGACACGAAGAAGAAGGAAGTCCTCGGTGACTACGCCGTCGCCGGCCGGGAATGGCACCGCGCCGGCCAGCCGGTACGGGTCC
GCGCCCATGACTTCCCCGAGAAGAACGCCCAGAAAGCGGTGCCCTACGGCATCTACGACCTCACCGCCGACACCGGCTGGGTGTCGGTCGGCTGCGACGG
CGACACCGCCGCGTTCGCGGTCGCGACCCTGCGCCGCTGGTGGGACGGCGAAGGCCGCCACCGCTACCCGACCGCAACCCGGCTGCTGATCACAGCGGAT
GCCGGCGGCGCGAACGGCTACCGGGTACGTGCCTGGAAGAAGGAACTCGCCGATCTCGCCCGCACGGCCAACCTTCAGATCACCGTGTGCCACTTCCCGC
CGGGTACCTCGAAATGGAACAAGATCGAGCACCGGTTGTTCTCCCGGATCAGCACGAACTGGCGCGGCCGCCCCCTGACCAGCCACGAGGTCGTGGTCAA
CACCATCGGTGCGACGACGACACGCACCGGGCTGAGCGTCCACGCCGAGCTCGACCCCGGCGCCTACCCGACCGGGCTGACCGTGCCCGACGAGGTCATG
GACGCCCTACCGCTGACGGCCCATGACTGGCACGGCCAGTGGAACTACACCCTCGTACCGGCGCCACCCCGCACCGTCTCGACGCCGGCGTCCCGGTATG
TCGAGACCGGCCAGCCCGACGACCGTGCCCCGGACTGGCTGCACCATCCGACCATCACCGGCATGAACCCGGGCGAGTTCACCGCCCTGCTCGCCGCCGC
CGAGCAGTACATCCTCGACCACCCACCGATCAGCCTGCACCACAAGCACGCCCGCCACCGCGTCCTGCGGCGCGGGCCCCTGTCGCTGTCCGACCGGCTG
CTCGTCACCCTGATCCACCATCGTTGGAAGACCCAGCAGCAGGCCCTCACCCGCCTGCTGGGTTCACCACGCGGCGCTGTCGGCGACGCGATCCACGAGA
TGACCCCAGTCCTGGACGGCCTCGACCGGAGGATCCAACCCGCGCCGATCACCGCGCCCACCGTCCAGGACCTCACCAGCCTGATCGATCCAAGCAACAT
CAAAAACAGAAGTTATTAATCGGCGACTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1635 bp544 aa851719+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MLAEKFTVLLPHLDERQRRLVLGADARALGHGGIRLVARAAGVSADTVSRGVAELESGAASTGRVRVPGAGRKALREKDSELVAALMALVEPDQRGDPES
PLRWTVKSTRRLAEQLTTDGHPVGADTVGALLRAEGFSLQGTSRTTEGARHPDRDGQFSYINERVKDFIAAGQPVVSVDTKKKEVLGDYAVAGREWHRAG
QPVRVRAHDFPEKNAQKAVPYGIYDLTADTGWVSVGCDGDTAAFAVATLRRWWDGEGRHRYPTATRLLITADAGGANGYRVRAWKKELADLARTANLQIT
VCHFPPGTSKWNKIEHRLFSRISTNWRGRPLTSHEVVVNTIGATTTRTGLSVHAELDPGAYPTGLTVPDEVMDALPLTAHDWHGQWNYTLVPAPPRTVST
PASRYVETGQPDDRAPDWLHHPTITGMNPGEFTALLAAAEQYILDHPPISLHHKHARHRVLRRGPLSLSDRLLVTLIHHRWKTQQQALTRLLGSPRGAVG
DAIHEMTPVLDGLDRRIQPAPITAPTVQDLTSLIDPSNIKNRSY

 

Blast result :
Comments
ISFsp12 is 61% aa similar to ISArch16.
References
1] ISfinder annotation (2008)
2] Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N., Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N., Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N., Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L., Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E., Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z., Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D., Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R. (2007) Genome Res. 17 (1), 7-15