ISScl2
- Family ISAzo13
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Streptomyces clavuligerus | Streptomyces clavuligerus ATCC 27064 |
DNA section
IS Length : 1819 bp
Ends
IR Length : 46/48
IRL : GGGCCTTGACCCAAGGCCGGGTAGTTAAAGGGCTTGCAGATCATTAACGC
IRR : GGGCCTTGACCCAAGGCCGGGTAGTTAGGGCTTGCAGATCATTAACTCGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGGCGCGACAC | GGC | CTGGGGCCAGTCGC | 3 |
DNA sequence
GGGCCTTGACCCAAGGCCGGGTAGTTAAAGGGCTTGCAGATCATTAACGCGTAGCTTCCCGGTTCGGTGGTCGTTGGCGTGGTATGGAAGCGATCGAAGA
CATAGCGGTGGCGCTGGCGGCGAAGTTCACGGTGCTGTTGCCGCATCTGGATGAGCGCCAGCGCCGTCTGCTGCTGGCGGCCGAGGCCCGGTCGATCGGT
CATGGCGGAATCAGGCTGGTCGCCCGTGCCGCTGGCGTGCGCGAGGCAACGGTGTCACTGGGCGTCACCGAGCTGGACTCCGGAGAGGCCCCCTTGGGGC
GGGTACGCCGGGTCGGTGGTGGCCGCAAGCGGGTGGTCGACCTGGACCCGGGACTACGCCCGGCACTGCTGGCCCTGGTGGAACCGGACGTGCGGGGCGA
CCCGATGTCACCCTTGCGTTGGACGACGAAGTCCACCCGCCATTTGGCCGCCGAGCTCACCCGCCAGGGCCACCGGATATCCGCTGACACCGTCGCCGAC
GTGCTGCGCGAGGAAGGCTTCAGCCTCCAGGGCAACGCCAAGGTCATCGAAGGCAAGCAGCACCCCGACCGGGACGGACAGTTCCGCTACATCAACGACC
AGGCCAAGGACCACCAGGCGGTCGGCGATCCCGTGATCAGCGTCGATACGAAGAAGAAGGAGGTCGTGGGTCCGTTGAAGAACGGCGGCAGGGAGTGGCG
GCCCGCAGGCGACCCCGAGCGGGTCAGCACCCATGACTTCCCGGACAGGGAACTCGGCAAGGCCGTGCCCTACGGCATCTACGACCTCGCCGCGAACACC
GGCTGGGTCAGCGTCGGCACTGACCACGACACCGCTGCCTTCGCCGTCGAATCCATCCGCCGCTGGTGGAAAGCCCGCGGCACGCAGGACTACCCGCAGG
CCAGGCGCCTGCTCATCACCGCCGACGCCGGCGGATCCAACGGCTACCGCACCCGCGCCTGGAAAGCTGAACTCGCCTCCCTGGCACTGGAAACAGGCCT
GCACATCACTGTCTGTCACTTTCCTCCGGGCACGTCTAAATGGAACCGGATCGAGCACCGGCTGTTCTCCCACATCACCATGAACTGGCGCGGCAGGCCT
CTAACGAGCCACGAGGTCATCGTGCAGTCCATCGCCGCGACCACCACCCGCACCGGCCTGAAAGTCCACGCCGAACTCGACAGCGCCACCTACGCCACCG
GAGTCCGCGTCGTCGACCGGCAACTGGACGCTCTTCCCCTGGCCCGTCATGAGTGGCACGGCGACTGGAATTACACCCTCCGCCCCGAGGAATACTGCCG
GGACGGCACCCCGCCCATCCCACCCCAGGACCTACCCGGCCCCGACCGCGCCTGGCTCGTCCACCCGGACCTGACCGGCCTGCAGCCCGACCAGTGGGAC
CGGCTGATCACCCAGCTGAGAGCCGCCCGCGAACTCCAGCGGGAAGAAGACCTCCACCAACGACGCGGCGGAGACCGGCAGAAAGTACCCGCCGCCGGCC
TGTACACGGGCCGGCGCCCCGGTCTCACCCTCGTCGACCGGCTCCTCGCCACCATCCTCTACCAGCGGTTCAAGCTCCCCCAGGTCGTCATCGCCCCGCT
CTTCACCGTCACACCCGTGACCCTCAACCGCGCCATCAGCCAGACCCGTCGGCTCCTGGACCAGATCGGACACACCATCGAACCCGCCACCACCCCACTG
GCCACCCTGGACGACCTTGCACACCTCGCCGCCCGCCTCGACACCGCCCCCACGACAAAGATCAAGACAGCGAGTTAATGATCTGCAAGCCCTAACTACC
CGGCCTTGGGTCAAGGCCC
CATAGCGGTGGCGCTGGCGGCGAAGTTCACGGTGCTGTTGCCGCATCTGGATGAGCGCCAGCGCCGTCTGCTGCTGGCGGCCGAGGCCCGGTCGATCGGT
CATGGCGGAATCAGGCTGGTCGCCCGTGCCGCTGGCGTGCGCGAGGCAACGGTGTCACTGGGCGTCACCGAGCTGGACTCCGGAGAGGCCCCCTTGGGGC
GGGTACGCCGGGTCGGTGGTGGCCGCAAGCGGGTGGTCGACCTGGACCCGGGACTACGCCCGGCACTGCTGGCCCTGGTGGAACCGGACGTGCGGGGCGA
CCCGATGTCACCCTTGCGTTGGACGACGAAGTCCACCCGCCATTTGGCCGCCGAGCTCACCCGCCAGGGCCACCGGATATCCGCTGACACCGTCGCCGAC
GTGCTGCGCGAGGAAGGCTTCAGCCTCCAGGGCAACGCCAAGGTCATCGAAGGCAAGCAGCACCCCGACCGGGACGGACAGTTCCGCTACATCAACGACC
AGGCCAAGGACCACCAGGCGGTCGGCGATCCCGTGATCAGCGTCGATACGAAGAAGAAGGAGGTCGTGGGTCCGTTGAAGAACGGCGGCAGGGAGTGGCG
GCCCGCAGGCGACCCCGAGCGGGTCAGCACCCATGACTTCCCGGACAGGGAACTCGGCAAGGCCGTGCCCTACGGCATCTACGACCTCGCCGCGAACACC
GGCTGGGTCAGCGTCGGCACTGACCACGACACCGCTGCCTTCGCCGTCGAATCCATCCGCCGCTGGTGGAAAGCCCGCGGCACGCAGGACTACCCGCAGG
CCAGGCGCCTGCTCATCACCGCCGACGCCGGCGGATCCAACGGCTACCGCACCCGCGCCTGGAAAGCTGAACTCGCCTCCCTGGCACTGGAAACAGGCCT
GCACATCACTGTCTGTCACTTTCCTCCGGGCACGTCTAAATGGAACCGGATCGAGCACCGGCTGTTCTCCCACATCACCATGAACTGGCGCGGCAGGCCT
CTAACGAGCCACGAGGTCATCGTGCAGTCCATCGCCGCGACCACCACCCGCACCGGCCTGAAAGTCCACGCCGAACTCGACAGCGCCACCTACGCCACCG
GAGTCCGCGTCGTCGACCGGCAACTGGACGCTCTTCCCCTGGCCCGTCATGAGTGGCACGGCGACTGGAATTACACCCTCCGCCCCGAGGAATACTGCCG
GGACGGCACCCCGCCCATCCCACCCCAGGACCTACCCGGCCCCGACCGCGCCTGGCTCGTCCACCCGGACCTGACCGGCCTGCAGCCCGACCAGTGGGAC
CGGCTGATCACCCAGCTGAGAGCCGCCCGCGAACTCCAGCGGGAAGAAGACCTCCACCAACGACGCGGCGGAGACCGGCAGAAAGTACCCGCCGCCGGCC
TGTACACGGGCCGGCGCCCCGGTCTCACCCTCGTCGACCGGCTCCTCGCCACCATCCTCTACCAGCGGTTCAAGCTCCCCCAGGTCGTCATCGCCCCGCT
CTTCACCGTCACACCCGTGACCCTCAACCGCGCCATCAGCCAGACCCGTCGGCTCCTGGACCAGATCGGACACACCATCGAACCCGCCACCACCCCACTG
GCCACCCTGGACGACCTTGCACACCTCGCCGCCCGCCTCGACACCGCCCCCACGACAAAGATCAAGACAGCGAGTTAATGATCTGCAAGCCCTAACTACC
CGGCCTTGGGTCAAGGCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1695 bp | 564 aa | 84 | 1778 | + | No |
Chemistry : Unknow
ORF sequence :
MEAIEDIAVALAAKFTVLLPHLDERQRRLLLAAEARSIGHGGIRLVARAAGVREATVSLGVTELDSGEAPLGRVRRVGGGRKRVVDLDPGLRPALLALVE
PDVRGDPMSPLRWTTKSTRHLAAELTRQGHRISADTVADVLREEGFSLQGNAKVIEGKQHPDRDGQFRYINDQAKDHQAVGDPVISVDTKKKEVVGPLKN
GGREWRPAGDPERVSTHDFPDRELGKAVPYGIYDLAANTGWVSVGTDHDTAAFAVESIRRWWKARGTQDYPQARRLLITADAGGSNGYRTRAWKAELASL
ALETGLHITVCHFPPGTSKWNRIEHRLFSHITMNWRGRPLTSHEVIVQSIAATTTRTGLKVHAELDSATYATGVRVVDRQLDALPLARHEWHGDWNYTLR
PEEYCRDGTPPIPPQDLPGPDRAWLVHPDLTGLQPDQWDRLITQLRAARELQREEDLHQRRGGDRQKVPAAGLYTGRRPGLTLVDRLLATILYQRFKLPQ
VVIAPLFTVTPVTLNRAISQTRRLLDQIGHTIEPATTPLATLDDLAHLAARLDTAPTTKIKTAS
PDVRGDPMSPLRWTTKSTRHLAAELTRQGHRISADTVADVLREEGFSLQGNAKVIEGKQHPDRDGQFRYINDQAKDHQAVGDPVISVDTKKKEVVGPLKN
GGREWRPAGDPERVSTHDFPDRELGKAVPYGIYDLAANTGWVSVGTDHDTAAFAVESIRRWWKARGTQDYPQARRLLITADAGGSNGYRTRAWKAELASL
ALETGLHITVCHFPPGTSKWNRIEHRLFSHITMNWRGRPLTSHEVIVQSIAATTTRTGLKVHAELDSATYATGVRVVDRQLDALPLARHEWHGDWNYTLR
PEEYCRDGTPPIPPQDLPGPDRAWLVHPDLTGLQPDQWDRLITQLRAARELQREEDLHQRRGGDRQKVPAAGLYTGRRPGLTLVDRLLATILYQRFKLPQ
VVIAPLFTVTPVTLNRAISQTRRLLDQIGHTIEPATTPLATLDDLAHLAARLDTAPTTKIKTAS
Blast result :
Comments
ISScl2 is 65% aa similar to ISArch16.
Genome in progress : Accession number : NZ_ABJH01000156
Genome in progress : Accession number : NZ_ABJH01000156
References
1] ISfinder annotation (2008)
2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Godfrey,P., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.
2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Godfrey,P., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.