ISRop2

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012520 ND Rhodococcus opacus
Rhodococcus opacus B4 plasmid pROB01
DNA section
IS Length : 2171 bp

Ends


IR Length : 23/30

IRL : GTGACTGTAAGGTAATAACATGGTGTTTTGCGGTTTGAGTCGGGTCGGTG
IRR : GTGACTGTAAGGAATTAATGTGCCGATTCGGGTGTGTCGCCCTCTCGTGG

Insertion site


Left flankDirect repeatRight flankDR Length
TGCTGTGGGTATTCCTCATCTTT3

DNA sequence

GTGACTGTAAGGTAATAACATGGTGTTTTGCGGTTTGAGTCGGGTCGGTGCGGTAGGGCGGTTGTGAGCGAGGTCGACGGGCGGCTGCGGGAGCGGTTCG
AGGTCTTGTTGCCGCATCTGAACGAGCGGCAGCGGCGTTTGGCGTTGGCGGCGGAGGCCCGGTCGCTGGGGCATGGCGGGGTGCGGGCGGTGGCCCGGGC
GGTCGGTGTCAGCGAGACCACGGTTCGCAGGGGCGTGTTCGAGTTGGAGGCCGGCGAGCAGCCGGCGCCGACGGGTCGGGTCCGCCGTCCGGGTGGGGGC
CGCAAGGGTGCGGACGCGCTGAATCCGCAGCTGGTGCCTGCGTTGTTGGCGCTGGTCGAGCCGGATGAGCGTGGGGATCCGGAGTCTCCGTTGCGGTGGA
CGACCAAGTCGCTGCGACACCTGGCCGAGGAGCTGACCCGGCAGGGCCATCCGGTGTCCGCGCCGACGGTGGGACGATTGTTGCGGGACAACGGATTCAG
TTTGCAGGCCAACGCCAAGACGTTGGAAGGCGAGCAGCACCCGGACCGGGACGTGCAGTTCCGCTACATCAACGAGCAGGTCAAGGCGCACCAGGACGCG
GGCGAGCCGGTGATCAGCGTCGATTCGAAGAAGAAGGAACAACTCGGCCAGCTGCCCACCCCGGGGCGCGAGTGGCGCCCGCAGGGCGATCCGGTGCGGG
TGGTCGATCACAGTTTCTTCACCGGACCGAATGCGGACCGGGCCATCCCGTACGGCGTCTACGACTTGACCACCGACGCAGGTTGGGTCAATGTCGGCGT
CGACCACGACACCGCCGCGTTCGCGGTCGCCTCCATCCGCCGCTGGTGGCAGGCCCGCGGCGCCGCCGACTACCCGCACGCGCGCCGGCTGCTGATCACC
GCCGACGCCGGTGGCTCCAACAGCTACCGGTACCGGTTGTGGAAGGCCGAATTGGCTGCGCTGGCAACCGAGACCGGGTTGGCGATCACGGTCTGCCATT
TCCCGCCCGGCACCTCGAAGTGGAACAAGATCGAGCACCGGTTGTTCTCCCAGATCACCATGAACTGGCGAGGGCGGCCGCTGACCAGCCATGAGGTCGT
GGTCAAGACCATCGCCTCCACCCGCACCCGCACCGGGTTGCGCGTGGACGCCGAGCTGGACACCGGCGACTACCCGATCGGGATCTCGGTTGGTCGAGAC
GAGTTGCGCGCGTTGCCCATCCGACCGCACGCCCAGTGCGGAACGTGGAACTACACCATCGAACCCACTCACGCCGACGCCGCTCCGGTTCCCGGCCGGG
ACCGGGAAGGCGAGCGCGTCGCGGCTGTCGCGATGCTCGCCGACTCGCGTCTGACCGGCATGACGGGCGACGAGCTGGACGAACTCACCGCACGGCTGGC
ACCGGCCCAGGCCGCGCGCGCCGAGCAACGCCGCTGGCACCAACGCGGCGGCCGGCGCCGCAATGCCCCGGGTGCCGGCGGGCGACGGCTGCTGTCGGAC
GCCGCGGCCCTGCTGATCACCGTCGTGTATCTGCGGCAGGTCTGCCCTCAGCGGGTGCTGTCGGATCTGCTCGGGGTGAATCCGAACTCCATCGGCGAAA
TCATCGCCGAAACGCGGATGCTGCTCGACGAACACGGCCATCACGTCACCCCGACCATCGGGCTGCGCTTCAGCACCGCTGCAGACCTCGCGGGATTTCT
CCGTGACGGCACGGCACCCGACCCGACACCGAATCGGCCGCTCCCCGAGGCACTGTCGCATCCGGCTCTGACCGGCATGAGTCGCCGGCAACTGGGCGAC
CTCGTCGAACGCCTCGCCGTCCGGCAAGCCGCCATGGTCGAGCGACGCCGCTACGCCCAACGCGGCGGCGAACGCATGCCAGGGGGCCGCGGCGGAATCT
TCCTCCAGAAGATCACCGATGCCGAACGCGTCCTGGCCACCGTTCTGCATATACGCCAGCTCTGCAACCGCGCCGTCCTGGCCGAACTGTTCCAGGTCAG
CCCCCGCACCATCGGCAATGCCCTGCTCGACGTGCGGCCACTGCTCGAACAGGACGGCTACACCCCGGCACCGGCAACCATCCGCTACCGCACCGCCGCC
GCCCTCCTCGCCGCCATACCACCACGAGAGGGCGACACACCCGAATCGGCACATTAATTCCTTACAGTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
2094 bp697 aa642157+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSEVDGRLRERFEVLLPHLNERQRRLALAAEARSLGHGGVRAVARAVGVSETTVRRGVFELEAGEQPAPTGRVRRPGGGRKGADALNPQLVPALLALVEP
DERGDPESPLRWTTKSLRHLAEELTRQGHPVSAPTVGRLLRDNGFSLQANAKTLEGEQHPDRDVQFRYINEQVKAHQDAGEPVISVDSKKKEQLGQLPTP
GREWRPQGDPVRVVDHSFFTGPNADRAIPYGVYDLTTDAGWVNVGVDHDTAAFAVASIRRWWQARGAADYPHARRLLITADAGGSNSYRYRLWKAELAAL
ATETGLAITVCHFPPGTSKWNKIEHRLFSQITMNWRGRPLTSHEVVVKTIASTRTRTGLRVDAELDTGDYPIGISVGRDELRALPIRPHAQCGTWNYTIE
PTHADAAPVPGRDREGERVAAVAMLADSRLTGMTGDELDELTARLAPAQAARAEQRRWHQRGGRRRNAPGAGGRRLLSDAAALLITVVYLRQVCPQRVLS
DLLGVNPNSIGEIIAETRMLLDEHGHHVTPTIGLRFSTAADLAGFLRDGTAPDPTPNRPLPEALSHPALTGMSRRQLGDLVERLAVRQAAMVERRRYAQR
GGERMPGGRGGIFLQKITDAERVLATVLHIRQLCNRAVLAELFQVSPRTIGNALLDVRPLLEQDGYTPAPATIRYRTAAALLAAIPPREGDTPESAH

 

Blast result :
Comments
ISRop2 is 69% aa similar to ISScl2.
References
1] ISfinder annotation (2009)
2] Takarada,H., Sekine,M., Hosoyama,A., Yamada,R., Fujisawa,T., Omata,S., Shimizu,A., Tsukatani,N., Tanikawa,S., Fujita,N. and Harayama,S. (2009) Direct submission GenBank.