ISRop2
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012520 | ND | Rhodococcus opacus | Rhodococcus opacus B4 plasmid pROB01 |
DNA section
IS Length : 2171 bp
Ends
IR Length : 23/30
IRL : GTGACTGTAAGGTAATAACATGGTGTTTTGCGGTTTGAGTCGGGTCGGTG
IRR : GTGACTGTAAGGAATTAATGTGCCGATTCGGGTGTGTCGCCCTCTCGTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCTGTGGGT | ATT | CCTCATCTTT | 3 |
DNA sequence
GTGACTGTAAGGTAATAACATGGTGTTTTGCGGTTTGAGTCGGGTCGGTGCGGTAGGGCGGTTGTGAGCGAGGTCGACGGGCGGCTGCGGGAGCGGTTCG
AGGTCTTGTTGCCGCATCTGAACGAGCGGCAGCGGCGTTTGGCGTTGGCGGCGGAGGCCCGGTCGCTGGGGCATGGCGGGGTGCGGGCGGTGGCCCGGGC
GGTCGGTGTCAGCGAGACCACGGTTCGCAGGGGCGTGTTCGAGTTGGAGGCCGGCGAGCAGCCGGCGCCGACGGGTCGGGTCCGCCGTCCGGGTGGGGGC
CGCAAGGGTGCGGACGCGCTGAATCCGCAGCTGGTGCCTGCGTTGTTGGCGCTGGTCGAGCCGGATGAGCGTGGGGATCCGGAGTCTCCGTTGCGGTGGA
CGACCAAGTCGCTGCGACACCTGGCCGAGGAGCTGACCCGGCAGGGCCATCCGGTGTCCGCGCCGACGGTGGGACGATTGTTGCGGGACAACGGATTCAG
TTTGCAGGCCAACGCCAAGACGTTGGAAGGCGAGCAGCACCCGGACCGGGACGTGCAGTTCCGCTACATCAACGAGCAGGTCAAGGCGCACCAGGACGCG
GGCGAGCCGGTGATCAGCGTCGATTCGAAGAAGAAGGAACAACTCGGCCAGCTGCCCACCCCGGGGCGCGAGTGGCGCCCGCAGGGCGATCCGGTGCGGG
TGGTCGATCACAGTTTCTTCACCGGACCGAATGCGGACCGGGCCATCCCGTACGGCGTCTACGACTTGACCACCGACGCAGGTTGGGTCAATGTCGGCGT
CGACCACGACACCGCCGCGTTCGCGGTCGCCTCCATCCGCCGCTGGTGGCAGGCCCGCGGCGCCGCCGACTACCCGCACGCGCGCCGGCTGCTGATCACC
GCCGACGCCGGTGGCTCCAACAGCTACCGGTACCGGTTGTGGAAGGCCGAATTGGCTGCGCTGGCAACCGAGACCGGGTTGGCGATCACGGTCTGCCATT
TCCCGCCCGGCACCTCGAAGTGGAACAAGATCGAGCACCGGTTGTTCTCCCAGATCACCATGAACTGGCGAGGGCGGCCGCTGACCAGCCATGAGGTCGT
GGTCAAGACCATCGCCTCCACCCGCACCCGCACCGGGTTGCGCGTGGACGCCGAGCTGGACACCGGCGACTACCCGATCGGGATCTCGGTTGGTCGAGAC
GAGTTGCGCGCGTTGCCCATCCGACCGCACGCCCAGTGCGGAACGTGGAACTACACCATCGAACCCACTCACGCCGACGCCGCTCCGGTTCCCGGCCGGG
ACCGGGAAGGCGAGCGCGTCGCGGCTGTCGCGATGCTCGCCGACTCGCGTCTGACCGGCATGACGGGCGACGAGCTGGACGAACTCACCGCACGGCTGGC
ACCGGCCCAGGCCGCGCGCGCCGAGCAACGCCGCTGGCACCAACGCGGCGGCCGGCGCCGCAATGCCCCGGGTGCCGGCGGGCGACGGCTGCTGTCGGAC
GCCGCGGCCCTGCTGATCACCGTCGTGTATCTGCGGCAGGTCTGCCCTCAGCGGGTGCTGTCGGATCTGCTCGGGGTGAATCCGAACTCCATCGGCGAAA
TCATCGCCGAAACGCGGATGCTGCTCGACGAACACGGCCATCACGTCACCCCGACCATCGGGCTGCGCTTCAGCACCGCTGCAGACCTCGCGGGATTTCT
CCGTGACGGCACGGCACCCGACCCGACACCGAATCGGCCGCTCCCCGAGGCACTGTCGCATCCGGCTCTGACCGGCATGAGTCGCCGGCAACTGGGCGAC
CTCGTCGAACGCCTCGCCGTCCGGCAAGCCGCCATGGTCGAGCGACGCCGCTACGCCCAACGCGGCGGCGAACGCATGCCAGGGGGCCGCGGCGGAATCT
TCCTCCAGAAGATCACCGATGCCGAACGCGTCCTGGCCACCGTTCTGCATATACGCCAGCTCTGCAACCGCGCCGTCCTGGCCGAACTGTTCCAGGTCAG
CCCCCGCACCATCGGCAATGCCCTGCTCGACGTGCGGCCACTGCTCGAACAGGACGGCTACACCCCGGCACCGGCAACCATCCGCTACCGCACCGCCGCC
GCCCTCCTCGCCGCCATACCACCACGAGAGGGCGACACACCCGAATCGGCACATTAATTCCTTACAGTCAC
AGGTCTTGTTGCCGCATCTGAACGAGCGGCAGCGGCGTTTGGCGTTGGCGGCGGAGGCCCGGTCGCTGGGGCATGGCGGGGTGCGGGCGGTGGCCCGGGC
GGTCGGTGTCAGCGAGACCACGGTTCGCAGGGGCGTGTTCGAGTTGGAGGCCGGCGAGCAGCCGGCGCCGACGGGTCGGGTCCGCCGTCCGGGTGGGGGC
CGCAAGGGTGCGGACGCGCTGAATCCGCAGCTGGTGCCTGCGTTGTTGGCGCTGGTCGAGCCGGATGAGCGTGGGGATCCGGAGTCTCCGTTGCGGTGGA
CGACCAAGTCGCTGCGACACCTGGCCGAGGAGCTGACCCGGCAGGGCCATCCGGTGTCCGCGCCGACGGTGGGACGATTGTTGCGGGACAACGGATTCAG
TTTGCAGGCCAACGCCAAGACGTTGGAAGGCGAGCAGCACCCGGACCGGGACGTGCAGTTCCGCTACATCAACGAGCAGGTCAAGGCGCACCAGGACGCG
GGCGAGCCGGTGATCAGCGTCGATTCGAAGAAGAAGGAACAACTCGGCCAGCTGCCCACCCCGGGGCGCGAGTGGCGCCCGCAGGGCGATCCGGTGCGGG
TGGTCGATCACAGTTTCTTCACCGGACCGAATGCGGACCGGGCCATCCCGTACGGCGTCTACGACTTGACCACCGACGCAGGTTGGGTCAATGTCGGCGT
CGACCACGACACCGCCGCGTTCGCGGTCGCCTCCATCCGCCGCTGGTGGCAGGCCCGCGGCGCCGCCGACTACCCGCACGCGCGCCGGCTGCTGATCACC
GCCGACGCCGGTGGCTCCAACAGCTACCGGTACCGGTTGTGGAAGGCCGAATTGGCTGCGCTGGCAACCGAGACCGGGTTGGCGATCACGGTCTGCCATT
TCCCGCCCGGCACCTCGAAGTGGAACAAGATCGAGCACCGGTTGTTCTCCCAGATCACCATGAACTGGCGAGGGCGGCCGCTGACCAGCCATGAGGTCGT
GGTCAAGACCATCGCCTCCACCCGCACCCGCACCGGGTTGCGCGTGGACGCCGAGCTGGACACCGGCGACTACCCGATCGGGATCTCGGTTGGTCGAGAC
GAGTTGCGCGCGTTGCCCATCCGACCGCACGCCCAGTGCGGAACGTGGAACTACACCATCGAACCCACTCACGCCGACGCCGCTCCGGTTCCCGGCCGGG
ACCGGGAAGGCGAGCGCGTCGCGGCTGTCGCGATGCTCGCCGACTCGCGTCTGACCGGCATGACGGGCGACGAGCTGGACGAACTCACCGCACGGCTGGC
ACCGGCCCAGGCCGCGCGCGCCGAGCAACGCCGCTGGCACCAACGCGGCGGCCGGCGCCGCAATGCCCCGGGTGCCGGCGGGCGACGGCTGCTGTCGGAC
GCCGCGGCCCTGCTGATCACCGTCGTGTATCTGCGGCAGGTCTGCCCTCAGCGGGTGCTGTCGGATCTGCTCGGGGTGAATCCGAACTCCATCGGCGAAA
TCATCGCCGAAACGCGGATGCTGCTCGACGAACACGGCCATCACGTCACCCCGACCATCGGGCTGCGCTTCAGCACCGCTGCAGACCTCGCGGGATTTCT
CCGTGACGGCACGGCACCCGACCCGACACCGAATCGGCCGCTCCCCGAGGCACTGTCGCATCCGGCTCTGACCGGCATGAGTCGCCGGCAACTGGGCGAC
CTCGTCGAACGCCTCGCCGTCCGGCAAGCCGCCATGGTCGAGCGACGCCGCTACGCCCAACGCGGCGGCGAACGCATGCCAGGGGGCCGCGGCGGAATCT
TCCTCCAGAAGATCACCGATGCCGAACGCGTCCTGGCCACCGTTCTGCATATACGCCAGCTCTGCAACCGCGCCGTCCTGGCCGAACTGTTCCAGGTCAG
CCCCCGCACCATCGGCAATGCCCTGCTCGACGTGCGGCCACTGCTCGAACAGGACGGCTACACCCCGGCACCGGCAACCATCCGCTACCGCACCGCCGCC
GCCCTCCTCGCCGCCATACCACCACGAGAGGGCGACACACCCGAATCGGCACATTAATTCCTTACAGTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
2094 bp | 697 aa | 64 | 2157 | + | No |
Chemistry : Unknow
ORF sequence :
MSEVDGRLRERFEVLLPHLNERQRRLALAAEARSLGHGGVRAVARAVGVSETTVRRGVFELEAGEQPAPTGRVRRPGGGRKGADALNPQLVPALLALVEP
DERGDPESPLRWTTKSLRHLAEELTRQGHPVSAPTVGRLLRDNGFSLQANAKTLEGEQHPDRDVQFRYINEQVKAHQDAGEPVISVDSKKKEQLGQLPTP
GREWRPQGDPVRVVDHSFFTGPNADRAIPYGVYDLTTDAGWVNVGVDHDTAAFAVASIRRWWQARGAADYPHARRLLITADAGGSNSYRYRLWKAELAAL
ATETGLAITVCHFPPGTSKWNKIEHRLFSQITMNWRGRPLTSHEVVVKTIASTRTRTGLRVDAELDTGDYPIGISVGRDELRALPIRPHAQCGTWNYTIE
PTHADAAPVPGRDREGERVAAVAMLADSRLTGMTGDELDELTARLAPAQAARAEQRRWHQRGGRRRNAPGAGGRRLLSDAAALLITVVYLRQVCPQRVLS
DLLGVNPNSIGEIIAETRMLLDEHGHHVTPTIGLRFSTAADLAGFLRDGTAPDPTPNRPLPEALSHPALTGMSRRQLGDLVERLAVRQAAMVERRRYAQR
GGERMPGGRGGIFLQKITDAERVLATVLHIRQLCNRAVLAELFQVSPRTIGNALLDVRPLLEQDGYTPAPATIRYRTAAALLAAIPPREGDTPESAH
DERGDPESPLRWTTKSLRHLAEELTRQGHPVSAPTVGRLLRDNGFSLQANAKTLEGEQHPDRDVQFRYINEQVKAHQDAGEPVISVDSKKKEQLGQLPTP
GREWRPQGDPVRVVDHSFFTGPNADRAIPYGVYDLTTDAGWVNVGVDHDTAAFAVASIRRWWQARGAADYPHARRLLITADAGGSNSYRYRLWKAELAAL
ATETGLAITVCHFPPGTSKWNKIEHRLFSQITMNWRGRPLTSHEVVVKTIASTRTRTGLRVDAELDTGDYPIGISVGRDELRALPIRPHAQCGTWNYTIE
PTHADAAPVPGRDREGERVAAVAMLADSRLTGMTGDELDELTARLAPAQAARAEQRRWHQRGGRRRNAPGAGGRRLLSDAAALLITVVYLRQVCPQRVLS
DLLGVNPNSIGEIIAETRMLLDEHGHHVTPTIGLRFSTAADLAGFLRDGTAPDPTPNRPLPEALSHPALTGMSRRQLGDLVERLAVRQAAMVERRRYAQR
GGERMPGGRGGIFLQKITDAERVLATVLHIRQLCNRAVLAELFQVSPRTIGNALLDVRPLLEQDGYTPAPATIRYRTAAALLAAIPPREGDTPESAH
Blast result :
Comments
ISRop2 is 69% aa similar to ISScl2.
References
1] ISfinder annotation (2009)
2] Takarada,H., Sekine,M., Hosoyama,A., Yamada,R., Fujisawa,T., Omata,S., Shimizu,A., Tsukatani,N., Tanikawa,S., Fujita,N. and Harayama,S. (2009) Direct submission GenBank.
2] Takarada,H., Sekine,M., Hosoyama,A., Yamada,R., Fujisawa,T., Omata,S., Shimizu,A., Tsukatani,N., Tanikawa,S., Fujita,N. and Harayama,S. (2009) Direct submission GenBank.