ISfinder Mirror Site

ISCph11

Family ISAzo13
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_008639	ND	Chlorobium phaeobacteroides	Chlorobium phaeobacteroides DSM 266

DNA section

IS Length : 1309 bp

Ends

IR Length : 20/26

IRL : GGAACCGTTAATAATTAACTATAACATTAAAAAGAAGATGTTATATTGTC
IRR : GGAGTCGTTAATAAATAAATAGTACAAATTCAGGGTGACCGAGGATCAAT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
GACTGTTCTT	TTA	GAGACGAAAT	3

DNA sequence

GGAACCGTTAATAATTAACTATAACATTAAAAAGAAGATGTTATATTGTCATCATGGACATTCATGATGACGACATAGATCTGATCCGCATCAGATTCGA
AAAAATCGAATGGGCATTGGATGAGCGTATGAGGCGTCTTTTTGCCGCCAATGAAGCGTATGCACTTGGGCACGGCGGCGTGACCAAAGTATCGCAAGCA
ACAGGAGTATCTCGCCGCGCCATACATGTAGGACTGGATGAACTGGTTGCGGCAAAACCACCCGTTCCGGAGCAGGAAAAGCGAATCCGGAAAGTCGGGG
GAGGAAGGAAATCCATCACCAAGACTGAATCAGGAGTGCTCATAGCATTGGAGCAGCTTGTTGAACCGACAACGCGAGGTGATCCTGAATCACCTTTGCG
CTGGACCTGCAAAAGCTTGCGAACCATTTCTGAAGAGCTTGCCCGACAAGGCTTCAAGGTGAGCTACCCAAAAGTTGCTGACCTGCTTCGCGAGCTTGGC
TATAGCTTGCAGGCCAACAGAAAAACACTCGAAGGAGCGGATCATCCTGACCGCAACGCACAATTCGAGCTTATCAATACGCAGACAAAAGAAACCATTG
CTGGCGGCAATCCTGTCATATCGGTCGATACCAAGAAAAAAGAGCTGGTAGGCGCTTTCAAAAATAATGGTACCAACTGGCGTCCCCAGGGAGAACCGGA
AGAAGTCAAAGTGCATGACTTTATCGACAAAGACCTGGGACGCGCAAATCCTTACGGTGTCTATGATATTGGCAGTAACACGGGATGGGTGAGCGTCGGC
ACTGATCATGATACAGCAAGCTTTGCCGTTGAAACCATTCGTCGTTGGTGGTATACAATGGGTAAGCCTCGTTATGCTGATGCAACGAAGATCATGATCA
CGGCTGATGGTGGAGGAAGTAACGGGAGCAAAGTACGTTTATGGAAGCTGGAGCTTCAAAAACTGGCCGATGAGTTGCGTATGTCGATCCATGTCTCTCA
TTTGCCTCCCGGCACCAGCAAGTGGAACAAAATTGAGCATCGTCTCTTCTCCTATATCAGTATGAACTGGCGTGGCCAACCATTGATCAGTCATGAGGTT
ATTGTCAACCTGATCGCAGGAACGACAACGAAAGCGGGATTGAAAGTCTATTCAGAACTGGATGATACCACCTATCCTGCCGGCATTAAAGTCAGTGAGA
CAGAGTTCAAAAGCATTCAGATTACCCGAAATGATTTTCATGGTGAGTGGAACTATAGAATTGATCCTCGGTCACCCTGAATTTGTACTATTTATTTATT
AACGACTCC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1227 bp	408 aa	54	1280	+	No

ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MDIHDDDIDLIRIRFEKIEWALDERMRRLFAANEAYALGHGGVTKVSQATGVSRRAIHVGLDELVAAKPPVPEQEKRIRKVGGGRKSITKTESGVLIALE
QLVEPTTRGDPESPLRWTCKSLRTISEELARQGFKVSYPKVADLLRELGYSLQANRKTLEGADHPDRNAQFELINTQTKETIAGGNPVISVDTKKKELVG
AFKNNGTNWRPQGEPEEVKVHDFIDKDLGRANPYGVYDIGSNTGWVSVGTDHDTASFAVETIRRWWYTMGKPRYADATKIMITADGGGSNGSKVRLWKLE
LQKLADELRMSIHVSHLPPGTSKWNKIEHRLFSYISMNWRGQPLISHEVIVNLIAGTTTKAGLKVYSELDDTTYPAGIKVSETEFKSIQITRNDFHGEWN
YRIDPRSP

Blast result :

Comments

ISCph11 is 90% aa similar to ISCph5.

References

1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T., Overmann,J., Bryant,D.A. and Richardson,P. (2006) Direct submission GenBank.