ISArch20

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FP565147 ND Uncultured archaeon
Uncultured archaeon
DNA section
IS Length : 1300 bp

Ends


IR Length : 21/27

IRL : GGGGGCGTCACGAAATAACTATATCAACTACCGCTTATTGAAATTACATG
IRR : GGGGGCGTCACAGAATAAGTGTGCCAAGTTCATGACGACGGATAGATAGT

Insertion site


Left flankDirect repeatRight flankDR Length
TTCTCCTTCGCTAAGAGCAATCACC3
CTTTTGAACTCTTAGGGACACCACA3
TTTCTCGCAGCTAAGGTGAAAATAA3
TGAAATTATCCTTAGTTACCTTAGA3
GAGAAATAAGCTAAGAGTAGAAGAA3
GAGAACTTCACTTAGTTTCATTTAA3
TGCCGCTTCACTTAGGGGCGTACAC3
TGTGGTGTCCCTAAGAGTTCAAAAG3

DNA sequence

GGGGGCGTCACGAAATAACTATATCAACTACCGCTTATTGAAATTACATGCAAGGTAAGAATGATGAGTCTATGATAAGGCAAAAGTTTCAGGCGTTAGA
GTGGGTGCTTGATGAGCGGTTGCGTCGCCTCGTGGCGGCAGCCGAAGCGGAGGCTATTGGTTATGGCGGACCCTCGATGGTGTCACGAGCAACTGGAGTA
TCGCGCCGGGGGATTCGCATCGGCGCAGAAGAGCTGAAGGAGAAGCTGGTTGTACCTACGGTGGGCGGAAAGAAGCGGATACGAAGAGAAGGCGGAGGAC
GAAAGAAAATGATAGATACAGACCCTACACTGAAGACCGATCTTGAGAAGCTGGTTAACCCACTCACGCGTGGGGATCCCGATTCTCCTCTGCGTTGGAC
ATGCAAAAGCGTTCGTCGGCTGGCTGATGAGCTAAAAGGGATGGGGCATCAGACGAGCCACCGCATGGTAGCCGAGATTCTCCATGATTTAGGCTATAGT
CTTAAGGCTAACAAAAAGACGCTAGAGGGGACAAGCCATCCTGATCGTGACGCCCAGTTCGAATACATCAACAGGAAGGTTCAGGTGCAGATTGCCACCA
ACGACCCGGTAATTTCGGTTGATACAAAGAAGAAGGAATTGGTGGGAAACTTTAAAAATGATGGGCAAGAGTGGGAGCCAAAAGGAATGAATGAAGAAGT
CAATACTTATGACTTCCTATCAATGGCAATAGGAAAAGGAATCCCTTATGGCGTGTATGATCCGGGACAAAACAAAGGATGGATCAGCGTTGGAATCGAT
CATGACACTTCCACTTTCGCTGTCGAAACCATTCGCCGATGGTGGTACTCGATGGGGCGGAAGCTCTATCCCAATGCCCAGCAATTACTTATCACGGCCG
ATGGAGGCGGTAGTAATGGCTACCGTGTCAGGCTCTGGAAGATGGAGCTTCAGAACCTTGCCAATGAACTCGGCTTTCCGATTTCCGTTTGCCATTTCCC
CCCAGGAACGAGTAAGTGGAACAAAATCGAACACCACATGTTCTCCTTTATAACTCAAAACTGGCGAGGAAAGCCGCTCGTCAGTCACGAAGTGATGGTG
AATCTCATTGGTGCTACGACTACAAAAAACGGACTCGGGATACATTGCGAACTAGACACCAATACATACCCTATCGGCCGTAAAATCTCGAAGGAAGAGC
TGGAAGCAGTCAACATTAAACGCAATGACTTCCATGGAGAATGGAACTATACTATCTATCCGTCGTCATGAACTTGGCACACTTATTCTGTGACGCCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa481271+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MQGKNDESMIRQKFQALEWVLDERLRRLVAAAEAEAIGYGGPSMVSRATGVSRRGIRIGAEELKEKLVVPTVGGKKRIRREGGGRKKMIDTDPTLKTDLE
KLVNPLTRGDPDSPLRWTCKSVRRLADELKGMGHQTSHRMVAEILHDLGYSLKANKKTLEGTSHPDRDAQFEYINRKVQVQIATNDPVISVDTKKKELVG
NFKNDGQEWEPKGMNEEVNTYDFLSMAIGKGIPYGVYDPGQNKGWISVGIDHDTSTFAVETIRRWWYSMGRKLYPNAQQLLITADGGGSNGYRVRLWKME
LQNLANELGFPISVCHFPPGTSKWNKIEHHMFSFITQNWRGKPLVSHEVMVNLIGATTTKNGLGIHCELDTNTYPIGRKISKEELEAVNIKRNDFHGEWN
YTIYPSS

 

Blast result :
Comments
ISArch20 is 73% aa similar to ISCARN84.
References
1] ISfinder annotation (2010)
2] Meyerdierks,A., Kube,M., Kostadinov,I., Teeling,H., Gloeckner,F.O., Reinhardt,R. and Amann,R. (2009) Direct submission GenBank)