ISArch20
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FP565147 | ND | Uncultured archaeon | Uncultured archaeon |
DNA section
IS Length : 1300 bp
Ends
IR Length : 21/27
IRL : GGGGGCGTCACGAAATAACTATATCAACTACCGCTTATTGAAATTACATG
IRR : GGGGGCGTCACAGAATAAGTGTGCCAAGTTCATGACGACGGATAGATAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCTCCTTCGC | TAA | GAGCAATCACC | 3 |
CTTTTGAACTC | TTA | GGGACACCACA | 3 |
TTTCTCGCAGC | TAA | GGTGAAAATAA | 3 |
TGAAATTATCC | TTA | GTTACCTTAGA | 3 |
GAGAAATAAGC | TAA | GAGTAGAAGAA | 3 |
GAGAACTTCAC | TTA | GTTTCATTTAA | 3 |
TGCCGCTTCAC | TTA | GGGGCGTACAC | 3 |
TGTGGTGTCCC | TAA | GAGTTCAAAAG | 3 |
DNA sequence
GGGGGCGTCACGAAATAACTATATCAACTACCGCTTATTGAAATTACATGCAAGGTAAGAATGATGAGTCTATGATAAGGCAAAAGTTTCAGGCGTTAGA
GTGGGTGCTTGATGAGCGGTTGCGTCGCCTCGTGGCGGCAGCCGAAGCGGAGGCTATTGGTTATGGCGGACCCTCGATGGTGTCACGAGCAACTGGAGTA
TCGCGCCGGGGGATTCGCATCGGCGCAGAAGAGCTGAAGGAGAAGCTGGTTGTACCTACGGTGGGCGGAAAGAAGCGGATACGAAGAGAAGGCGGAGGAC
GAAAGAAAATGATAGATACAGACCCTACACTGAAGACCGATCTTGAGAAGCTGGTTAACCCACTCACGCGTGGGGATCCCGATTCTCCTCTGCGTTGGAC
ATGCAAAAGCGTTCGTCGGCTGGCTGATGAGCTAAAAGGGATGGGGCATCAGACGAGCCACCGCATGGTAGCCGAGATTCTCCATGATTTAGGCTATAGT
CTTAAGGCTAACAAAAAGACGCTAGAGGGGACAAGCCATCCTGATCGTGACGCCCAGTTCGAATACATCAACAGGAAGGTTCAGGTGCAGATTGCCACCA
ACGACCCGGTAATTTCGGTTGATACAAAGAAGAAGGAATTGGTGGGAAACTTTAAAAATGATGGGCAAGAGTGGGAGCCAAAAGGAATGAATGAAGAAGT
CAATACTTATGACTTCCTATCAATGGCAATAGGAAAAGGAATCCCTTATGGCGTGTATGATCCGGGACAAAACAAAGGATGGATCAGCGTTGGAATCGAT
CATGACACTTCCACTTTCGCTGTCGAAACCATTCGCCGATGGTGGTACTCGATGGGGCGGAAGCTCTATCCCAATGCCCAGCAATTACTTATCACGGCCG
ATGGAGGCGGTAGTAATGGCTACCGTGTCAGGCTCTGGAAGATGGAGCTTCAGAACCTTGCCAATGAACTCGGCTTTCCGATTTCCGTTTGCCATTTCCC
CCCAGGAACGAGTAAGTGGAACAAAATCGAACACCACATGTTCTCCTTTATAACTCAAAACTGGCGAGGAAAGCCGCTCGTCAGTCACGAAGTGATGGTG
AATCTCATTGGTGCTACGACTACAAAAAACGGACTCGGGATACATTGCGAACTAGACACCAATACATACCCTATCGGCCGTAAAATCTCGAAGGAAGAGC
TGGAAGCAGTCAACATTAAACGCAATGACTTCCATGGAGAATGGAACTATACTATCTATCCGTCGTCATGAACTTGGCACACTTATTCTGTGACGCCCCC
GTGGGTGCTTGATGAGCGGTTGCGTCGCCTCGTGGCGGCAGCCGAAGCGGAGGCTATTGGTTATGGCGGACCCTCGATGGTGTCACGAGCAACTGGAGTA
TCGCGCCGGGGGATTCGCATCGGCGCAGAAGAGCTGAAGGAGAAGCTGGTTGTACCTACGGTGGGCGGAAAGAAGCGGATACGAAGAGAAGGCGGAGGAC
GAAAGAAAATGATAGATACAGACCCTACACTGAAGACCGATCTTGAGAAGCTGGTTAACCCACTCACGCGTGGGGATCCCGATTCTCCTCTGCGTTGGAC
ATGCAAAAGCGTTCGTCGGCTGGCTGATGAGCTAAAAGGGATGGGGCATCAGACGAGCCACCGCATGGTAGCCGAGATTCTCCATGATTTAGGCTATAGT
CTTAAGGCTAACAAAAAGACGCTAGAGGGGACAAGCCATCCTGATCGTGACGCCCAGTTCGAATACATCAACAGGAAGGTTCAGGTGCAGATTGCCACCA
ACGACCCGGTAATTTCGGTTGATACAAAGAAGAAGGAATTGGTGGGAAACTTTAAAAATGATGGGCAAGAGTGGGAGCCAAAAGGAATGAATGAAGAAGT
CAATACTTATGACTTCCTATCAATGGCAATAGGAAAAGGAATCCCTTATGGCGTGTATGATCCGGGACAAAACAAAGGATGGATCAGCGTTGGAATCGAT
CATGACACTTCCACTTTCGCTGTCGAAACCATTCGCCGATGGTGGTACTCGATGGGGCGGAAGCTCTATCCCAATGCCCAGCAATTACTTATCACGGCCG
ATGGAGGCGGTAGTAATGGCTACCGTGTCAGGCTCTGGAAGATGGAGCTTCAGAACCTTGCCAATGAACTCGGCTTTCCGATTTCCGTTTGCCATTTCCC
CCCAGGAACGAGTAAGTGGAACAAAATCGAACACCACATGTTCTCCTTTATAACTCAAAACTGGCGAGGAAAGCCGCTCGTCAGTCACGAAGTGATGGTG
AATCTCATTGGTGCTACGACTACAAAAAACGGACTCGGGATACATTGCGAACTAGACACCAATACATACCCTATCGGCCGTAAAATCTCGAAGGAAGAGC
TGGAAGCAGTCAACATTAAACGCAATGACTTCCATGGAGAATGGAACTATACTATCTATCCGTCGTCATGAACTTGGCACACTTATTCTGTGACGCCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 48 | 1271 | + | No |
Chemistry : Unknow
ORF sequence :
MQGKNDESMIRQKFQALEWVLDERLRRLVAAAEAEAIGYGGPSMVSRATGVSRRGIRIGAEELKEKLVVPTVGGKKRIRREGGGRKKMIDTDPTLKTDLE
KLVNPLTRGDPDSPLRWTCKSVRRLADELKGMGHQTSHRMVAEILHDLGYSLKANKKTLEGTSHPDRDAQFEYINRKVQVQIATNDPVISVDTKKKELVG
NFKNDGQEWEPKGMNEEVNTYDFLSMAIGKGIPYGVYDPGQNKGWISVGIDHDTSTFAVETIRRWWYSMGRKLYPNAQQLLITADGGGSNGYRVRLWKME
LQNLANELGFPISVCHFPPGTSKWNKIEHHMFSFITQNWRGKPLVSHEVMVNLIGATTTKNGLGIHCELDTNTYPIGRKISKEELEAVNIKRNDFHGEWN
YTIYPSS
KLVNPLTRGDPDSPLRWTCKSVRRLADELKGMGHQTSHRMVAEILHDLGYSLKANKKTLEGTSHPDRDAQFEYINRKVQVQIATNDPVISVDTKKKELVG
NFKNDGQEWEPKGMNEEVNTYDFLSMAIGKGIPYGVYDPGQNKGWISVGIDHDTSTFAVETIRRWWYSMGRKLYPNAQQLLITADGGGSNGYRVRLWKME
LQNLANELGFPISVCHFPPGTSKWNKIEHHMFSFITQNWRGKPLVSHEVMVNLIGATTTKNGLGIHCELDTNTYPIGRKISKEELEAVNIKRNDFHGEWN
YTIYPSS
Blast result :
Comments
ISArch20 is 73% aa similar to ISCARN84.
References
1] ISfinder annotation (2010)
2] Meyerdierks,A., Kube,M., Kostadinov,I., Teeling,H., Gloeckner,F.O., Reinhardt,R. and Amann,R. (2009) Direct submission GenBank)
2] Meyerdierks,A., Kube,M., Kostadinov,I., Teeling,H., Gloeckner,F.O., Reinhardt,R. and Amann,R. (2009) Direct submission GenBank)