ISRhru5
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007643 | ND | Rhodospirillum rubrum | Rhodospirillum rubrum ATCC 11170 |
DNA section
IS Length : 842 bp
Ends
IR Length : 14/21
IRL : GCGGTGAACTCATAAATCTGCTTTCCTCTCGCCGTGGTCCGTGATTCCCG
IRR : GCCGTCGACTCATTATGGCTGACACCAAATCCGCAGGGCGACGAGTTTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTAAGGAAG | CTAG | ATGAAGCGCC | 4 |
DNA sequence
GCGGTGAACTCATAAATCTGCTTTCCTCTCGCCGTGGTCCGTGATTCCCGTCCTGGAGCGGGGGTTTTGATGACGCGTCGGCGCTATGAATTGACGGAAT
ATGAGTGGTCGGTGATCCAGCCTTTGTTGCCGAACAAGCAGCGCGGAGTTCCCCGCGTCGATGACCGGCGGGTCCTCAATGGAATTCTGTGGCGCTTTCG
TACCGGGTCGCCGTGGGCAGAAGTCCCCGAGCGCTACGGCCCGCCGACTACCTGCTACAACCGCTTCGTCCGCTGGCGCAAGGCCGGGGTGTGGGACCGG
CTTTCGGAAGAAGTTTCAAAGACCTACGATGGCGACATCGTCATGATCGACTCGACCTGTGTCCGTGTTCACCAGCACGGAGCCACGGGAAAAAAGGGGA
TCTTGAGGATGGCGGCATGGGACGTTCCCGTGGCGGCCTCATCAGCAAAATCCACGCGCTCGTCGATGCGGAAGGCCGCCCCGTCACCTTGCGGCTGACC
GGCGGCCAAGTTCATGATAGCTTGGAAGCCGAGGCGTTGATCGAAAACCTCGGCGAGGGTGACATCCTGCTCGCCGACAAGGGCTATGACAGCAACGCCA
TTCGCGCCCTGGCCGCAGAGAAGAAGGCTTGGGCCAATATCCCGCCCCGCTCCAACCGCAAAGGCAGCTTCGCCTTTTCTTCCTGGGTCTACCGCCAATG
CACTCTGGTCGAGCGCTTCTTCAACAGGATCAAGCAGTTCCGGGGCATCGCCACCCGATATGACAAAGACCCGCTCAATTTCCTCGCTGCCGTTAAACTC
GTCGCCCTGCGGATTTGGTGTCAGCCATAATGAGTCGACGGC
ATGAGTGGTCGGTGATCCAGCCTTTGTTGCCGAACAAGCAGCGCGGAGTTCCCCGCGTCGATGACCGGCGGGTCCTCAATGGAATTCTGTGGCGCTTTCG
TACCGGGTCGCCGTGGGCAGAAGTCCCCGAGCGCTACGGCCCGCCGACTACCTGCTACAACCGCTTCGTCCGCTGGCGCAAGGCCGGGGTGTGGGACCGG
CTTTCGGAAGAAGTTTCAAAGACCTACGATGGCGACATCGTCATGATCGACTCGACCTGTGTCCGTGTTCACCAGCACGGAGCCACGGGAAAAAAGGGGA
TCTTGAGGATGGCGGCATGGGACGTTCCCGTGGCGGCCTCATCAGCAAAATCCACGCGCTCGTCGATGCGGAAGGCCGCCCCGTCACCTTGCGGCTGACC
GGCGGCCAAGTTCATGATAGCTTGGAAGCCGAGGCGTTGATCGAAAACCTCGGCGAGGGTGACATCCTGCTCGCCGACAAGGGCTATGACAGCAACGCCA
TTCGCGCCCTGGCCGCAGAGAAGAAGGCTTGGGCCAATATCCCGCCCCGCTCCAACCGCAAAGGCAGCTTCGCCTTTTCTTCCTGGGTCTACCGCCAATG
CACTCTGGTCGAGCGCTTCTTCAACAGGATCAAGCAGTTCCGGGGCATCGCCACCCGATATGACAAAGACCCGCTCAATTTCCTCGCTGCCGTTAAACTC
GTCGCCCTGCGGATTTGGTGTCAGCCATAATGAGTCGACGGC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
429 bp | 142 aa | 70 | 498 | + | No |
Description : First part of the transposase
ORF sequence :
MTRRRYELTEYEWSVIQPLLPNKQRGVPRVDDRRVLNGILWRFRTGSPWAEVPERYGPPTTCYNRFVRWRKAGVWDRLSEEVSKTYDGDIVMIDSTCVRV
HQHGATGKKGILRMAAWDVPVAASSAKSTRSSMRKAAPSPCG
HQHGATGKKGILRMAAWDVPVAASSAKSTRSSMRKAAPSPCG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
666 bp | 221 aa | 165 | 830 | + | No |
Description : Second part of the transposase
ORF sequence :
PAGPQWNSVALSYRVAVGRSPRALRPADYLLQPLRPLAQGRGVGPAFGRSFKDLRWRHRHDRLDLCPCSPARSHGKKGDLEDGGMGRSRGGLISKIHALV
DAEGRPVTLRLTGGQVHDSLEAEALIENLGEGDILLADKGYDSNAIRALAAEKKAWANIPPRSNRKGSFAFSSWVYRQCTLVERFFNRIKQFRGIATRYD
KDPLNFLAAVKLVALRIWCQP
DAEGRPVTLRLTGGQVHDSLEAEALIENLGEGDILLADKGYDSNAIRALAAEKKAWANIPPRSNRKGSFAFSSWVYRQCTLVERFFNRIKQFRGIATRYD
KDPLNFLAAVKLVALRIWCQP
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
761 bp | 253 aa | 70 | 830 | + | Yes |
Chemistry : DDE
ORF sequence :
MTRRRYELTEYEWSVIQPLLPNKQRGVPRVDDRRVLNGILWRFRTGSPWAEVPERYGPPTTCYNRFVRWRKAGVWDRLSEEVSKTYDGDIVMIDSTCVRV
HQHGATGKKGDLEDGGMGRSRGGLISKIHALVDAEGRPVTLRLTGGQVHDSLEAEALIENLGEGDILLADKGYDSNAIRALAAEKKAWANIPPRSNRKGS
FAFSSWVYRQCTLVERFFNRIKQFRGIATRYDKDPLNFLAAVKLVALRIWCQP
HQHGATGKKGDLEDGGMGRSRGGLISKIHALVDAEGRPVTLRLTGGQVHDSLEAEALIENLGEGDILLADKGYDSNAIRALAAEKKAWANIPPRSNRKGS
FAFSSWVYRQCTLVERFFNRIKQFRGIATRYDKDPLNFLAAVKLVALRIWCQP
Blast result :
Comments
ISRhru5 is 87% aa similar to IS869. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K., Richardson,P., Zhang,Y., Roberts,G., Reslewic,S., Zhou,S. and Schwartz,D.C. (2009) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K., Richardson,P., Zhang,Y., Roberts,G., Reslewic,S., Zhou,S. and Schwartz,D.C. (2009) Direct submission GenBank.