ISRhru3

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007643 ND Rhodospirillum rubrum
Rhodospirillum rubrum ATCC 11170
DNA section
IS Length : 1382 bp

Ends


IR Length : 12

IRL : GATGCGGTAATGGGCCTTGGCCAGGAGTCTAGCCAGGCAAGGTGGCCATC
IRR : ---TCCGTAATGGGCCTTCTGGTGTCAACCCCCGAGAGTTGTCTCGTCGC

Insertion site


Left flankDirect repeatRight flankDR Length
AAAGGGGTCAAGACCCCCGT0
AAGGGGGTCTTGACCCCTTT0

DNA sequence

GATGCGGTAATGGGCCTTGGCCAGGAGTCTAGCCAGGCAAGGTGGCCATCCCCGAAGATGGTGTTGAAGAACCACGGGGTCCGAAGCGATCGGCCCCAAG
CATCGACGGGGATAGCCATGGACTACTATGCCGGCATCGACGTTTCATTGGAACTGAGCAGCGTGTGCATCGTGAACCAGGATGGCAAGATCTTTCGGGA
AGTGAAGGTGGCGAGCGATCCGGAAGCGCTGATTGGCCTGTTCGGCGGGCTTGGTGTGGCGCTGAGCCGGATCGGCCTGGAAGCCGGACCGTTATCGCAG
TGGCTGCACGCCGGACTGACGGCTGGCGGATACGATGTGGTTCTTTTGGAAACCCGTCATGTCAAAGCCGGACTGTCGGCGATGACGGTGAAGACCGACC
GCAAGGATGCGCGTGGCATCGCCCATTTGCTGCGGATGGGGTGGTTCCGTCCGGTGCATTGCAAAACCAACTCGGCCCAGGAAATCCGGGTGCTTCTGGT
GGGGCGCAAGCTTCTGCAAAGCAAGATGGGAGACCTCGAGCAAGGCATTCGCGGCCTGCTGCGCGGCTTCGGCCTCAAAGTCGGGGTCATTAGCAAGGGG
CGGTTCGCCGCCCGCATCCGCGAATTGGTGGCCGGGCAAGCCATGTTGGAAACGGTCGCCGAGCCGATGCTGCGCGCCCGCGATGCCTTGCGTGCGGAAT
TCACCCTTCTGCATCGCCAGATTTTGGCGATTGTGCGAAAGGACGACCTCTGCCGCCGCCTGATGACGGTGCCGGGCGTCGGCCCCCTGGTGGCGCTTAC
CTTCAAAAGCGGGATTGATGATCCCAGTCGCTTTACCTCGTCAAAGACGGTCGGCGCCCATTTCGGGTTGACCCCGAAGAAATATCAATCGGGCGAAACC
GACATTACCGGAGGCATCACCCGCACCGGCGATGCCATGGTACGGATGGCGCTCTATGAGGCGGCGCAGGTGCTGCTAACCAGATCCCAGCGCTTCTCAA
GCTTGAAGCGTTGGGCCTTGGAGGTCGCCAAGCGACGCGGCATGAAGCGGGCCAAGGTGGCCCTGGCCCGCAAGTTGGCCACGGTGCTCCATCGCATGTG
GATCGATGGCAGCGACTTCCGTTGGGGGAAGGAGATCACCTCGGCGTAAAAGGAAATAGCTTTCAGGTGGGACTGAACGGTTCCGCCTTCCGAGGTCCCG
TCGCCGGGACGCGGAGTCCGTTGAAGCCGCTAAAAGGGTTGTGCTTTGGAGCACGCGGGTCAGATCGGCTCACGGATTCCCTCTGATAGCATGGTGTGGC
GGCCACGTGCCGACCACGGACGGAAGCGTGAGACGGCGACGAGACAACTCTCGGGGGTTGACACCAGAAGGCCCATTACGGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1032 bp343 aa1181149+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MDYYAGIDVSLELSSVCIVNQDGKIFREVKVASDPEALIGLFGGLGVALSRIGLEAGPLSQWLHAGLTAGGYDVVLLETRHVKAGLSAMTVKTDRKDARG
IAHLLRMGWFRPVHCKTNSAQEIRVLLVGRKLLQSKMGDLEQGIRGLLRGFGLKVGVISKGRFAARIRELVAGQAMLETVAEPMLRARDALRAEFTLLHR
QILAIVRKDDLCRRLMTVPGVGPLVALTFKSGIDDPSRFTSSKTVGAHFGLTPKKYQSGETDITGGITRTGDAMVRMALYEAAQVLLTRSQRFSSLKRWA
LEVAKRRGMKRAKVALARKLATVLHRMWIDGSDFRWGKEITSA

 

Blast result :
Comments
ISRhru3 is 83% aa similar to ISMdi9.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K., Richardson,P., Zhang,Y., Roberts,G., Reslewic,S., Zhou,S. and Schwartz,D.C. (2005) Direct submission GenBank.