ISRhru3
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007643 | ND | Rhodospirillum rubrum | Rhodospirillum rubrum ATCC 11170 |
DNA section
IS Length : 1382 bp
Ends
IR Length : 12
IRL : GATGCGGTAATGGGCCTTGGCCAGGAGTCTAGCCAGGCAAGGTGGCCATC
IRR : ---TCCGTAATGGGCCTTCTGGTGTCAACCCCCGAGAGTTGTCTCGTCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAGGGGTCA | AGACCCCCGT | 0 | |
AAGGGGGTCT | TGACCCCTTT | 0 |
DNA sequence
GATGCGGTAATGGGCCTTGGCCAGGAGTCTAGCCAGGCAAGGTGGCCATCCCCGAAGATGGTGTTGAAGAACCACGGGGTCCGAAGCGATCGGCCCCAAG
CATCGACGGGGATAGCCATGGACTACTATGCCGGCATCGACGTTTCATTGGAACTGAGCAGCGTGTGCATCGTGAACCAGGATGGCAAGATCTTTCGGGA
AGTGAAGGTGGCGAGCGATCCGGAAGCGCTGATTGGCCTGTTCGGCGGGCTTGGTGTGGCGCTGAGCCGGATCGGCCTGGAAGCCGGACCGTTATCGCAG
TGGCTGCACGCCGGACTGACGGCTGGCGGATACGATGTGGTTCTTTTGGAAACCCGTCATGTCAAAGCCGGACTGTCGGCGATGACGGTGAAGACCGACC
GCAAGGATGCGCGTGGCATCGCCCATTTGCTGCGGATGGGGTGGTTCCGTCCGGTGCATTGCAAAACCAACTCGGCCCAGGAAATCCGGGTGCTTCTGGT
GGGGCGCAAGCTTCTGCAAAGCAAGATGGGAGACCTCGAGCAAGGCATTCGCGGCCTGCTGCGCGGCTTCGGCCTCAAAGTCGGGGTCATTAGCAAGGGG
CGGTTCGCCGCCCGCATCCGCGAATTGGTGGCCGGGCAAGCCATGTTGGAAACGGTCGCCGAGCCGATGCTGCGCGCCCGCGATGCCTTGCGTGCGGAAT
TCACCCTTCTGCATCGCCAGATTTTGGCGATTGTGCGAAAGGACGACCTCTGCCGCCGCCTGATGACGGTGCCGGGCGTCGGCCCCCTGGTGGCGCTTAC
CTTCAAAAGCGGGATTGATGATCCCAGTCGCTTTACCTCGTCAAAGACGGTCGGCGCCCATTTCGGGTTGACCCCGAAGAAATATCAATCGGGCGAAACC
GACATTACCGGAGGCATCACCCGCACCGGCGATGCCATGGTACGGATGGCGCTCTATGAGGCGGCGCAGGTGCTGCTAACCAGATCCCAGCGCTTCTCAA
GCTTGAAGCGTTGGGCCTTGGAGGTCGCCAAGCGACGCGGCATGAAGCGGGCCAAGGTGGCCCTGGCCCGCAAGTTGGCCACGGTGCTCCATCGCATGTG
GATCGATGGCAGCGACTTCCGTTGGGGGAAGGAGATCACCTCGGCGTAAAAGGAAATAGCTTTCAGGTGGGACTGAACGGTTCCGCCTTCCGAGGTCCCG
TCGCCGGGACGCGGAGTCCGTTGAAGCCGCTAAAAGGGTTGTGCTTTGGAGCACGCGGGTCAGATCGGCTCACGGATTCCCTCTGATAGCATGGTGTGGC
GGCCACGTGCCGACCACGGACGGAAGCGTGAGACGGCGACGAGACAACTCTCGGGGGTTGACACCAGAAGGCCCATTACGGA
CATCGACGGGGATAGCCATGGACTACTATGCCGGCATCGACGTTTCATTGGAACTGAGCAGCGTGTGCATCGTGAACCAGGATGGCAAGATCTTTCGGGA
AGTGAAGGTGGCGAGCGATCCGGAAGCGCTGATTGGCCTGTTCGGCGGGCTTGGTGTGGCGCTGAGCCGGATCGGCCTGGAAGCCGGACCGTTATCGCAG
TGGCTGCACGCCGGACTGACGGCTGGCGGATACGATGTGGTTCTTTTGGAAACCCGTCATGTCAAAGCCGGACTGTCGGCGATGACGGTGAAGACCGACC
GCAAGGATGCGCGTGGCATCGCCCATTTGCTGCGGATGGGGTGGTTCCGTCCGGTGCATTGCAAAACCAACTCGGCCCAGGAAATCCGGGTGCTTCTGGT
GGGGCGCAAGCTTCTGCAAAGCAAGATGGGAGACCTCGAGCAAGGCATTCGCGGCCTGCTGCGCGGCTTCGGCCTCAAAGTCGGGGTCATTAGCAAGGGG
CGGTTCGCCGCCCGCATCCGCGAATTGGTGGCCGGGCAAGCCATGTTGGAAACGGTCGCCGAGCCGATGCTGCGCGCCCGCGATGCCTTGCGTGCGGAAT
TCACCCTTCTGCATCGCCAGATTTTGGCGATTGTGCGAAAGGACGACCTCTGCCGCCGCCTGATGACGGTGCCGGGCGTCGGCCCCCTGGTGGCGCTTAC
CTTCAAAAGCGGGATTGATGATCCCAGTCGCTTTACCTCGTCAAAGACGGTCGGCGCCCATTTCGGGTTGACCCCGAAGAAATATCAATCGGGCGAAACC
GACATTACCGGAGGCATCACCCGCACCGGCGATGCCATGGTACGGATGGCGCTCTATGAGGCGGCGCAGGTGCTGCTAACCAGATCCCAGCGCTTCTCAA
GCTTGAAGCGTTGGGCCTTGGAGGTCGCCAAGCGACGCGGCATGAAGCGGGCCAAGGTGGCCCTGGCCCGCAAGTTGGCCACGGTGCTCCATCGCATGTG
GATCGATGGCAGCGACTTCCGTTGGGGGAAGGAGATCACCTCGGCGTAAAAGGAAATAGCTTTCAGGTGGGACTGAACGGTTCCGCCTTCCGAGGTCCCG
TCGCCGGGACGCGGAGTCCGTTGAAGCCGCTAAAAGGGTTGTGCTTTGGAGCACGCGGGTCAGATCGGCTCACGGATTCCCTCTGATAGCATGGTGTGGC
GGCCACGTGCCGACCACGGACGGAAGCGTGAGACGGCGACGAGACAACTCTCGGGGGTTGACACCAGAAGGCCCATTACGGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 118 | 1149 | + | No |
Chemistry : DEDD
ORF sequence :
MDYYAGIDVSLELSSVCIVNQDGKIFREVKVASDPEALIGLFGGLGVALSRIGLEAGPLSQWLHAGLTAGGYDVVLLETRHVKAGLSAMTVKTDRKDARG
IAHLLRMGWFRPVHCKTNSAQEIRVLLVGRKLLQSKMGDLEQGIRGLLRGFGLKVGVISKGRFAARIRELVAGQAMLETVAEPMLRARDALRAEFTLLHR
QILAIVRKDDLCRRLMTVPGVGPLVALTFKSGIDDPSRFTSSKTVGAHFGLTPKKYQSGETDITGGITRTGDAMVRMALYEAAQVLLTRSQRFSSLKRWA
LEVAKRRGMKRAKVALARKLATVLHRMWIDGSDFRWGKEITSA
IAHLLRMGWFRPVHCKTNSAQEIRVLLVGRKLLQSKMGDLEQGIRGLLRGFGLKVGVISKGRFAARIRELVAGQAMLETVAEPMLRARDALRAEFTLLHR
QILAIVRKDDLCRRLMTVPGVGPLVALTFKSGIDDPSRFTSSKTVGAHFGLTPKKYQSGETDITGGITRTGDAMVRMALYEAAQVLLTRSQRFSSLKRWA
LEVAKRRGMKRAKVALARKLATVLHRMWIDGSDFRWGKEITSA
Blast result :
Comments
ISRhru3 is 83% aa similar to ISMdi9.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K., Richardson,P., Zhang,Y., Roberts,G., Reslewic,S., Zhou,S. and Schwartz,D.C. (2005) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K., Richardson,P., Zhang,Y., Roberts,G., Reslewic,S., Zhou,S. and Schwartz,D.C. (2005) Direct submission GenBank.