ISPa34
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GU354325 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa W37 |
DNA section
IS Length : 1216 bp
Ends
IR Length : 10
IRL : tttcatcGATCAATCACACGAAAAGGGGAAGTCGCCATGCAGTCTATTAC
IRR : ----gacGATCAATCACGACCAGCAGTGGCAACCAACTTGTTAGTCAGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATGATTGCA | ATGGCTAGGG | 0 |
DNA sequence
TTTCATCGATCAATCACACGAAAAGGGGAAGTCGCCATGCAGTCTATTACAGCCGGTGTTGACCTCGCAAAGCAGGTATTTGCCATTTGTCTCATGGATG
ATGCCGGTCATGTAACCGGCCGCCGTGAGCTTCGCCGAGATGGGTTTCATCAATGGCTTGCCGAGCAACCCGAAGGCATGATCGTCGCCATGGAGGCCTG
CAGCAGTGCTCACTACTGGGGCCGTGAATGCCAGCGTCACGGCTTGCAGCCACGCCTCATGGCCGCCCAATTCGTCAAACCCTTCCGCAAGCGGGCTTTG
ATCAAGAATGACCGGCAGGATGCCGAAGCCATTGCCACCGCTGCGCGCCAAGGCAATATGCGCTTCGTGGCCGTCAAGGATGAGCCACAGCAGGTGCGTC
TGAGCTGGCATCGCGTACGGGAGGGTTACAAGAAGGATGCCCTGGCCGTGCGCAATCGCTTGCGCGGTCTGCTGGCCGAGTTCGGTGTGGTTATCCCGGA
GTCAGTCACGGCACTCAAGCGCACCCTGGCTGATCTGGATCGCCATGAACTGCCAACCGGCCTGCTACGCCTGATCCGATTGCAGCAGGAACATCTCAAG
ATCATCGAGGCCGGCATGGCCGAATGTGATGCCCGCATTGCCGAGCAAGCCACAGCGGATGAACGCTGCCAGCGTCTACGCGCGCTGACCGGTATTGGCC
CGGTGACGGCAGATGCCGTAGTGGCCTCGGTCGGGAATGCGGCCGAGTTCCGCAACGGCCGCCAGTTCGCGGCCTGGATGGGTCTGACACCCACGCAGTT
CGGTTCGGGAGGCAAGGTCAGCCTCGGGCACATCAGTTGTCGGGGTGATCGTTACTTGCGTACCTTGCTAATACAGGGTGCTCGCAGCAGCCTGCAGCGA
GCGAAGCTGATACCAACCGACACAGCCACGCCAGAGCAGCAATGGATCGTGCAACTGGCAGCGCGCATGAGTTACGGCAAAGTGCTGGTCGCCATCGCCA
ACAAGCATGCACGACAGGTCTGGGCCATGTTGGCCCGCAGCGAGGCATACGATCCGGAGGCGTGGCTCAAGCACCCGATGGTGCAGCGAACCTGAGCCTC
GGGGAAACCGAGCAACAACATCCACGCCAGAGCACACGAGGTAACAACGGGTCAGACCGACCCGGAGAGAGCCTGACTAACAAGTTGGTTGCCACTGCTG
GTCGTGATTGATCCTC
ATGCCGGTCATGTAACCGGCCGCCGTGAGCTTCGCCGAGATGGGTTTCATCAATGGCTTGCCGAGCAACCCGAAGGCATGATCGTCGCCATGGAGGCCTG
CAGCAGTGCTCACTACTGGGGCCGTGAATGCCAGCGTCACGGCTTGCAGCCACGCCTCATGGCCGCCCAATTCGTCAAACCCTTCCGCAAGCGGGCTTTG
ATCAAGAATGACCGGCAGGATGCCGAAGCCATTGCCACCGCTGCGCGCCAAGGCAATATGCGCTTCGTGGCCGTCAAGGATGAGCCACAGCAGGTGCGTC
TGAGCTGGCATCGCGTACGGGAGGGTTACAAGAAGGATGCCCTGGCCGTGCGCAATCGCTTGCGCGGTCTGCTGGCCGAGTTCGGTGTGGTTATCCCGGA
GTCAGTCACGGCACTCAAGCGCACCCTGGCTGATCTGGATCGCCATGAACTGCCAACCGGCCTGCTACGCCTGATCCGATTGCAGCAGGAACATCTCAAG
ATCATCGAGGCCGGCATGGCCGAATGTGATGCCCGCATTGCCGAGCAAGCCACAGCGGATGAACGCTGCCAGCGTCTACGCGCGCTGACCGGTATTGGCC
CGGTGACGGCAGATGCCGTAGTGGCCTCGGTCGGGAATGCGGCCGAGTTCCGCAACGGCCGCCAGTTCGCGGCCTGGATGGGTCTGACACCCACGCAGTT
CGGTTCGGGAGGCAAGGTCAGCCTCGGGCACATCAGTTGTCGGGGTGATCGTTACTTGCGTACCTTGCTAATACAGGGTGCTCGCAGCAGCCTGCAGCGA
GCGAAGCTGATACCAACCGACACAGCCACGCCAGAGCAGCAATGGATCGTGCAACTGGCAGCGCGCATGAGTTACGGCAAAGTGCTGGTCGCCATCGCCA
ACAAGCATGCACGACAGGTCTGGGCCATGTTGGCCCGCAGCGAGGCATACGATCCGGAGGCGTGGCTCAAGCACCCGATGGTGCAGCGAACCTGAGCCTC
GGGGAAACCGAGCAACAACATCCACGCCAGAGCACACGAGGTAACAACGGGTCAGACCGACCCGGAGAGAGCCTGACTAACAAGTTGGTTGCCACTGCTG
GTCGTGATTGATCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1059 bp | 352 aa | 37 | 1095 | + | No |
Chemistry : DEDD
ORF sequence :
MQSITAGVDLAKQVFAICLMDDAGHVTGRRELRRDGFHQWLAEQPEGMIVAMEACSSAHYWGRECQRHGLQPRLMAAQFVKPFRKRALIKNDRQDAEAIA
TAARQGNMRFVAVKDEPQQVRLSWHRVREGYKKDALAVRNRLRGLLAEFGVVIPESVTALKRTLADLDRHELPTGLLRLIRLQQEHLKIIEAGMAECDAR
IAEQATADERCQRLRALTGIGPVTADAVVASVGNAAEFRNGRQFAAWMGLTPTQFGSGGKVSLGHISCRGDRYLRTLLIQGARSSLQRAKLIPTDTATPE
QQWIVQLAARMSYGKVLVAIANKHARQVWAMLARSEAYDPEAWLKHPMVQRT
TAARQGNMRFVAVKDEPQQVRLSWHRVREGYKKDALAVRNRLRGLLAEFGVVIPESVTALKRTLADLDRHELPTGLLRLIRLQQEHLKIIEAGMAECDAR
IAEQATADERCQRLRALTGIGPVTADAVVASVGNAAEFRNGRQFAAWMGLTPTQFGSGGKVSLGHISCRGDRYLRTLLIQGARSSLQRAKLIPTDTATPE
QQWIVQLAARMSYGKVLVAIANKHARQVWAMLARSEAYDPEAWLKHPMVQRT
Blast result :
Comments
ISPa34 has been detected inside an integron structure. ISPa34 is 62% aa similar to IS1618. According to the rules of this group of the IS110 family, IRs are not at the termini of the IS but at 7 nt on the left end and 3 nt of the rigth end.
References