ISMno32
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 |
DNA section
IS Length : 1549 bp
Ends
IR Length : 24/32
IRL : GGGCCTGTTGAAAAAGGGTGGTTAGGCTTTGTCACGGCGGTAGAGCAGTG
IRR : GGGCCCGTTGAAGAAGCCAGTTTAAGTTTGTTGGCTTACGCGGCTGGCCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGATACCGGC | GCGCG | TTTGCCCTGA | 5 |
DNA sequence
GGGCCTGTTGAAAAAGGGTGGTTAGGCTTTGTCACGGCGGTAGAGCAGTGATTCCCTTCCAGTGTTGGTGGCTGGGAGGGCCCCATGCTGGGTCGGCGGG
ATCGGGATCAACCCGAGTTGTTCGTGGCAGGCTCGCTGCGCCAGATTTTGCCGGATGATCACATCCTGGTGCGGGTCGACCGGGTGCTCGATCTGTCCTG
GCTGCGGGCGAGCGTGGCAGACCTATACTGCGCGACCACCGGCCGACCAGGCATCGATCCCGAGGTCGCCGTGCGGCTGATGCTGGCCGGGTTCCTGCTC
GGGATCGTTCACGACCGCCGCCTTTTGCGTGAGGCACAGGTCAACCTCGCGATCCGCTGGTTCGTCGGCTACGGCCTACACGAGGCGCTACCGGATCATT
CCTCGCTCACCCGCATCCGCCAGCGCTGGGGCGCGGAGCGGTTCAAGGCGATCCTGGTGCGCACGGTGGAGGCCTGCGTGGCCGCCGGGATTGCCAAGGG
TGAGGTGGTCCACATCGACGCCTCGCTGGTGCGCGCCGACGTGACCTGGGACGCTATCGCCGACGCTCACGCCGAGGCCGTCACCCGGGCGCACGCGCCC
TTGCCGGACACGACCCCGCCCGCGCCGTGCCAGGAGCCACGTCCGGCGCCCACCTCGGGCCGCACAAGTGCGGGTAGCAAGCCGCGGCGTGTCTGCACCA
CCGATCCGGACGCCTCCCTGGGCAAAATACGAAGCAATCTGCCCGCCCAGCCCTCCTCCAAGCAGCACACCGCCGTCGATGCCGCGTGCGGGGTCGTCCT
CGACATCTTGGTCACGACGGGGGCCGCCCACGAGAGCACCACCGTCGAGGACCAGCTCGACGCCGTGACGGCCGCCACCGGCCAGCCGATCCGGATCGCT
ACGCTGGACGCGGGCTACGCGATCACGCGCCTGTTGGCGAGCCTGGAGGCGCGCGGCATCGAGGCCATCGTTCCCACCCGACCCGAGCGGCCGCCCCGGC
CCGGCGTCATCCCTGTGCGGCGCTTCAAGCTCGATGCCCGCCACAACCGCGTGCGCTGCCCGCGAGGCCGCACGCTGCGCCCCCATGGCAAGCCGGACGC
CGACGGGTTCCAGGCCTACCGCGCCCTGGTGAAGGACTGCACTGCCTATCCGCTGCGCCCGCGCTGCTTCAGCCCGACCCTGAAGCGGCGGGCCATCCTC
CTGCACAAGGATCATCCCGCCCTGATCCGAGCCCGGCGCAAGCACCGGGCCTGGGGGCCACGGGAGAAGGCGCTCTATGCCTCGCACCGCGGCCGGGTCG
AGGGCGTGCATGGCGAGGCCAAGACCTGGCATGGCCTGGACCGCGCGATCCGGCGCGGGCTCGGCAACATGAGCATCCAGGCCTACCTGACCGCTGCCGC
CATCAACCTCAAGCGCCTCGCGGCCGCGATCCGTCTGCTTCTGCGCAGCCTCCAGCTCTGGCACGCGCACCTGGGTCATCCCGTCGCGCGGCCAGCCGCG
TAAGCCAACAAACTTAAACTGGCTTCTTCAACGGGCCC
ATCGGGATCAACCCGAGTTGTTCGTGGCAGGCTCGCTGCGCCAGATTTTGCCGGATGATCACATCCTGGTGCGGGTCGACCGGGTGCTCGATCTGTCCTG
GCTGCGGGCGAGCGTGGCAGACCTATACTGCGCGACCACCGGCCGACCAGGCATCGATCCCGAGGTCGCCGTGCGGCTGATGCTGGCCGGGTTCCTGCTC
GGGATCGTTCACGACCGCCGCCTTTTGCGTGAGGCACAGGTCAACCTCGCGATCCGCTGGTTCGTCGGCTACGGCCTACACGAGGCGCTACCGGATCATT
CCTCGCTCACCCGCATCCGCCAGCGCTGGGGCGCGGAGCGGTTCAAGGCGATCCTGGTGCGCACGGTGGAGGCCTGCGTGGCCGCCGGGATTGCCAAGGG
TGAGGTGGTCCACATCGACGCCTCGCTGGTGCGCGCCGACGTGACCTGGGACGCTATCGCCGACGCTCACGCCGAGGCCGTCACCCGGGCGCACGCGCCC
TTGCCGGACACGACCCCGCCCGCGCCGTGCCAGGAGCCACGTCCGGCGCCCACCTCGGGCCGCACAAGTGCGGGTAGCAAGCCGCGGCGTGTCTGCACCA
CCGATCCGGACGCCTCCCTGGGCAAAATACGAAGCAATCTGCCCGCCCAGCCCTCCTCCAAGCAGCACACCGCCGTCGATGCCGCGTGCGGGGTCGTCCT
CGACATCTTGGTCACGACGGGGGCCGCCCACGAGAGCACCACCGTCGAGGACCAGCTCGACGCCGTGACGGCCGCCACCGGCCAGCCGATCCGGATCGCT
ACGCTGGACGCGGGCTACGCGATCACGCGCCTGTTGGCGAGCCTGGAGGCGCGCGGCATCGAGGCCATCGTTCCCACCCGACCCGAGCGGCCGCCCCGGC
CCGGCGTCATCCCTGTGCGGCGCTTCAAGCTCGATGCCCGCCACAACCGCGTGCGCTGCCCGCGAGGCCGCACGCTGCGCCCCCATGGCAAGCCGGACGC
CGACGGGTTCCAGGCCTACCGCGCCCTGGTGAAGGACTGCACTGCCTATCCGCTGCGCCCGCGCTGCTTCAGCCCGACCCTGAAGCGGCGGGCCATCCTC
CTGCACAAGGATCATCCCGCCCTGATCCGAGCCCGGCGCAAGCACCGGGCCTGGGGGCCACGGGAGAAGGCGCTCTATGCCTCGCACCGCGGCCGGGTCG
AGGGCGTGCATGGCGAGGCCAAGACCTGGCATGGCCTGGACCGCGCGATCCGGCGCGGGCTCGGCAACATGAGCATCCAGGCCTACCTGACCGCTGCCGC
CATCAACCTCAAGCGCCTCGCGGCCGCGATCCGTCTGCTTCTGCGCAGCCTCCAGCTCTGGCACGCGCACCTGGGTCATCCCGTCGCGCGGCCAGCCGCG
TAAGCCAACAAACTTAAACTGGCTTCTTCAACGGGCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1419 bp | 472 aa | 85 | 1503 | + | No |
Chemistry : DDE
ORF sequence :
MLGRRDRDQPELFVAGSLRQILPDDHILVRVDRVLDLSWLRASVADLYCATTGRPGIDPEVAVRLMLAGFLLGIVHDRRLLREAQVNLAIRWFVGYGLHE
ALPDHSSLTRIRQRWGAERFKAILVRTVEACVAAGIAKGEVVHIDASLVRADVTWDAIADAHAEAVTRAHAPLPDTTPPAPCQEPRPAPTSGRTSAGSKP
RRVCTTDPDASLGKIRSNLPAQPSSKQHTAVDAACGVVLDILVTTGAAHESTTVEDQLDAVTAATGQPIRIATLDAGYAITRLLASLEARGIEAIVPTRP
ERPPRPGVIPVRRFKLDARHNRVRCPRGRTLRPHGKPDADGFQAYRALVKDCTAYPLRPRCFSPTLKRRAILLHKDHPALIRARRKHRAWGPREKALYAS
HRGRVEGVHGEAKTWHGLDRAIRRGLGNMSIQAYLTAAAINLKRLAAAIRLLLRSLQLWHAHLGHPVARPAA
ALPDHSSLTRIRQRWGAERFKAILVRTVEACVAAGIAKGEVVHIDASLVRADVTWDAIADAHAEAVTRAHAPLPDTTPPAPCQEPRPAPTSGRTSAGSKP
RRVCTTDPDASLGKIRSNLPAQPSSKQHTAVDAACGVVLDILVTTGAAHESTTVEDQLDAVTAATGQPIRIATLDAGYAITRLLASLEARGIEAIVPTRP
ERPPRPGVIPVRRFKLDARHNRVRCPRGRTLRPHGKPDADGFQAYRALVKDCTAYPLRPRCFSPTLKRRAILLHKDHPALIRARRKHRAWGPREKALYAS
HRGRVEGVHGEAKTWHGLDRAIRRGLGNMSIQAYLTAAAINLKRLAAAIRLLLRSLQLWHAHLGHPVARPAA
Blast result :
Comments
ISMno32 is 71% aa similar to ISMno17.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.