ISClce1
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ACPD01000136 | ND | Clostridium cellulovorans | Clostridium cellulovorans 743B |
DNA section
IS Length : 1157 bp
Ends
IR Length : 11/13
IRL : ACTCGTTGTGCTAGTTAAATACGTTGGCAATACTTACAAATAGAAAAACT
IRR : ACCTGTTGTGCTAACAGATAAGTTTTCATTAATAGGATATTTATTCCATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNTTA | TAANNNNNNN | 0 |
DNA sequence
ACTCGTTGTGCTAGTTAAATACGTTGGCAATACTTACAAATAGAAAAACTCCAGCATATTTGCTAACCTATCATTAAAAAACACGACTAATCTAATGATA
GGAGGCTAACTTATATGCCAGAGTTTAATAAAGATTTTATCATAACAATAAACAACTTAAAAGATTTTATTGTTGTCACTTATGTTATAATTGATGATTT
TTACCAAAAGGTAACTCCAGCATTTATTATGAACCGTCGCAATATTGATAAGTCAGTAATGTCTGATAGCGAAATCATTACTTTATCTTTAGTAGGCGAA
CTCTTAACCATTGACTCTGAAAAAGCTTGGTTTGGGTTTTGTTCTAAAAACTTACGAGATCTGTTCCCTAATTTTTGTAGTAGAACAAGATTTCATAGAG
TAAGAAAATCCTTATTTCGAGTCACAGATGCAATACGTAAGGAATTTATGAAATTTCTTAACTATCAATATGATCGAATAAGAATTGTAGATAGTATGCC
TATTCCTGTGTGTAAATTTGGTAGAGCTCACTTTCATAAGTCATTTAAGCCGAAGGCTGCCTACGGGCGATGCGCTTCGAAAAAAGAGACATATTACGGC
TTCAAATTACATGCATTAGTTGCTTTAGATGGCTATATCACAGACTTCTCTATTACTGCTGCAAACATTGATGATAGAGACGCAGTCTGGGAACTTATAG
ATAATTCAGTTGTTAATACACTAATAGGCGATAAAGGCTATATAGGTCAAAAGATTGCTTCGCAATTAAAAGAGATAATGGATATTAATCTTCTAACCAT
AAGTCGTAATAACAGTAAAATTAAACTTTTAAAACCACTTAGGCAACTCATATTCAAGGCTCGTCGTAGAATAGAAACCACTTTTTCTCAGCTCTCCGAG
CAATTGAATATACAGAGGGTTCTTGCAAAGTCAACTTGGGGCTTTGCTACAAGAATAGTAAATAAAATATTAGCTCATAATCTTTGTTATTTTATAAATA
AAATCTTAAATATAGGTATAGATACAGCAAAGATTAAGACATTAATATTTGGATAATAATTCCTAAGGATTTGGCGACATCTTCATTAGGAGAAGTCTGC
TCAAATATATGGAATAAATATCCTATTAATGAAAACTTATCTGTTAGCACAACAGGT
GGAGGCTAACTTATATGCCAGAGTTTAATAAAGATTTTATCATAACAATAAACAACTTAAAAGATTTTATTGTTGTCACTTATGTTATAATTGATGATTT
TTACCAAAAGGTAACTCCAGCATTTATTATGAACCGTCGCAATATTGATAAGTCAGTAATGTCTGATAGCGAAATCATTACTTTATCTTTAGTAGGCGAA
CTCTTAACCATTGACTCTGAAAAAGCTTGGTTTGGGTTTTGTTCTAAAAACTTACGAGATCTGTTCCCTAATTTTTGTAGTAGAACAAGATTTCATAGAG
TAAGAAAATCCTTATTTCGAGTCACAGATGCAATACGTAAGGAATTTATGAAATTTCTTAACTATCAATATGATCGAATAAGAATTGTAGATAGTATGCC
TATTCCTGTGTGTAAATTTGGTAGAGCTCACTTTCATAAGTCATTTAAGCCGAAGGCTGCCTACGGGCGATGCGCTTCGAAAAAAGAGACATATTACGGC
TTCAAATTACATGCATTAGTTGCTTTAGATGGCTATATCACAGACTTCTCTATTACTGCTGCAAACATTGATGATAGAGACGCAGTCTGGGAACTTATAG
ATAATTCAGTTGTTAATACACTAATAGGCGATAAAGGCTATATAGGTCAAAAGATTGCTTCGCAATTAAAAGAGATAATGGATATTAATCTTCTAACCAT
AAGTCGTAATAACAGTAAAATTAAACTTTTAAAACCACTTAGGCAACTCATATTCAAGGCTCGTCGTAGAATAGAAACCACTTTTTCTCAGCTCTCCGAG
CAATTGAATATACAGAGGGTTCTTGCAAAGTCAACTTGGGGCTTTGCTACAAGAATAGTAAATAAAATATTAGCTCATAATCTTTGTTATTTTATAAATA
AAATCTTAAATATAGGTATAGATACAGCAAAGATTAAGACATTAATATTTGGATAATAATTCCTAAGGATTTGGCGACATCTTCATTAGGAGAAGTCTGC
TCAAATATATGGAATAAATATCCTATTAATGAAAACTTATCTGTTAGCACAACAGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 115 | 1056 | + | No |
Chemistry : DDE
ORF sequence :
MPEFNKDFIITINNLKDFIVVTYVIIDDFYQKVTPAFIMNRRNIDKSVMSDSEIITLSLVGELLTIDSEKAWFGFCSKNLRDLFPNFCSRTRFHRVRKSL
FRVTDAIRKEFMKFLNYQYDRIRIVDSMPIPVCKFGRAHFHKSFKPKAAYGRCASKKETYYGFKLHALVALDGYITDFSITAANIDDRDAVWELIDNSVV
NTLIGDKGYIGQKIASQLKEIMDINLLTISRNNSKIKLLKPLRQLIFKARRRIETTFSQLSEQLNIQRVLAKSTWGFATRIVNKILAHNLCYFINKILNI
GIDTAKIKTLIFG
FRVTDAIRKEFMKFLNYQYDRIRIVDSMPIPVCKFGRAHFHKSFKPKAAYGRCASKKETYYGFKLHALVALDGYITDFSITAANIDDRDAVWELIDNSVV
NTLIGDKGYIGQKIASQLKEIMDINLLTISRNNSKIKLLKPLRQLIFKARRRIETTFSQLSEQLNIQRVLAKSTWGFATRIVNKILAHNLCYFINKILNI
GIDTAKIKTLIFG
Blast result :
Comments
ISClce1 is 75% aa similar to ISCth1.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Hemme,C.L. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Hemme,C.L. (2009) Direct submission GenBank.