ISClce1

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ACPD01000136 ND Clostridium cellulovorans
Clostridium cellulovorans 743B
DNA section
IS Length : 1157 bp

Ends


IR Length : 11/13

IRL : ACTCGTTGTGCTAGTTAAATACGTTGGCAATACTTACAAATAGAAAAACT
IRR : ACCTGTTGTGCTAACAGATAAGTTTTCATTAATAGGATATTTATTCCATA

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNTTATAANNNNNNN0

DNA sequence

ACTCGTTGTGCTAGTTAAATACGTTGGCAATACTTACAAATAGAAAAACTCCAGCATATTTGCTAACCTATCATTAAAAAACACGACTAATCTAATGATA
GGAGGCTAACTTATATGCCAGAGTTTAATAAAGATTTTATCATAACAATAAACAACTTAAAAGATTTTATTGTTGTCACTTATGTTATAATTGATGATTT
TTACCAAAAGGTAACTCCAGCATTTATTATGAACCGTCGCAATATTGATAAGTCAGTAATGTCTGATAGCGAAATCATTACTTTATCTTTAGTAGGCGAA
CTCTTAACCATTGACTCTGAAAAAGCTTGGTTTGGGTTTTGTTCTAAAAACTTACGAGATCTGTTCCCTAATTTTTGTAGTAGAACAAGATTTCATAGAG
TAAGAAAATCCTTATTTCGAGTCACAGATGCAATACGTAAGGAATTTATGAAATTTCTTAACTATCAATATGATCGAATAAGAATTGTAGATAGTATGCC
TATTCCTGTGTGTAAATTTGGTAGAGCTCACTTTCATAAGTCATTTAAGCCGAAGGCTGCCTACGGGCGATGCGCTTCGAAAAAAGAGACATATTACGGC
TTCAAATTACATGCATTAGTTGCTTTAGATGGCTATATCACAGACTTCTCTATTACTGCTGCAAACATTGATGATAGAGACGCAGTCTGGGAACTTATAG
ATAATTCAGTTGTTAATACACTAATAGGCGATAAAGGCTATATAGGTCAAAAGATTGCTTCGCAATTAAAAGAGATAATGGATATTAATCTTCTAACCAT
AAGTCGTAATAACAGTAAAATTAAACTTTTAAAACCACTTAGGCAACTCATATTCAAGGCTCGTCGTAGAATAGAAACCACTTTTTCTCAGCTCTCCGAG
CAATTGAATATACAGAGGGTTCTTGCAAAGTCAACTTGGGGCTTTGCTACAAGAATAGTAAATAAAATATTAGCTCATAATCTTTGTTATTTTATAAATA
AAATCTTAAATATAGGTATAGATACAGCAAAGATTAAGACATTAATATTTGGATAATAATTCCTAAGGATTTGGCGACATCTTCATTAGGAGAAGTCTGC
TCAAATATATGGAATAAATATCCTATTAATGAAAACTTATCTGTTAGCACAACAGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp313 aa1151056+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPEFNKDFIITINNLKDFIVVTYVIIDDFYQKVTPAFIMNRRNIDKSVMSDSEIITLSLVGELLTIDSEKAWFGFCSKNLRDLFPNFCSRTRFHRVRKSL
FRVTDAIRKEFMKFLNYQYDRIRIVDSMPIPVCKFGRAHFHKSFKPKAAYGRCASKKETYYGFKLHALVALDGYITDFSITAANIDDRDAVWELIDNSVV
NTLIGDKGYIGQKIASQLKEIMDINLLTISRNNSKIKLLKPLRQLIFKARRRIETTFSQLSEQLNIQRVLAKSTWGFATRIVNKILAHNLCYFINKILNI
GIDTAKIKTLIFG

 

Blast result :
Comments
ISClce1 is 75% aa similar to ISCth1.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Hemme,C.L. (2009) Direct submission GenBank.