ISRmsp1
- Family IS982
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_GG696071 | ND | Ruminococcus sp. | Ruminococcus sp. 5_1_39B_FAA |
DNA section
IS Length : 1112 bp
Ends
IR Length : 21/28
IRL : ACTTGTTGTGCTAGATAAAATAAAATATAAAGAAACTTCAACAAAATATG
IRR : ACCTATTGTGCTACTTCAAATAGATTATGTGAAAACCTGTAAAACCGCAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| NNNNNNNNNA | TAAANNNNNN | 0 |
DNA sequence
ACTTGTTGTGCTAGATAAAATAAAATATAAAGAAACTTCAACAAAATATGCTATCCTTTTTGTAGGGAATACAACGAAAGGAGGCATCATTATGTTGAAG
TTCCAAGATAATAATACCACTGTTATTGCAACTTTTGAAGACTTTATTTTAACTGCTTACGTTATTATTGACGAATTGTATCATCAGTTTGCACCTCCAG
AAGTTACCAGACGACGGCATATCCTGAATGCAAAATTATCTGACTCAGAAATCATTACTATCAGTCTCTGCGGAGAATTGGCAGGCGTTGATTCTGAGAA
TGCATGGTTTTCTTTTGTGAAACGAAACTACAGGCATCTTTTTCCGCAGCTTTGCAGCAGAAGTCGTTTTAACAGAACGAGACGCGCCCTGATGCAGACA
ACAGAATTGTTACGACAAAAAATGATTTCCGTATTCCCAATTCCAGTCAGTTCCTATTACATCGTCGATAGTTTTCCACTTGCAGTCTGTAAATTTGGAC
GTGCACGATATTGTAAAGCATTTCGTGGCCATGGTGCTGATTATGGAAAATGTCCTTCCAAAAAAGAAACCTATTATGGATATAAAGTACATGCATTAAT
TACATTAGAAGGATACATTGCATCATTTGAGATCACACCGGCATCTACAGATGATCGTGAAGGATTACGTGATCTGGCAGACCATTGGTCTAATGTTACA
ATTTTAGCGGATAAAGGCTATGTTGGAAAAAACATGAAACAGGAAATGCAGGAAAAAAATATCTGTCTTTTTGCTCTGAAACGTTCCAACAGTAAGGAAA
ATTGGCCGAAATCCGTACGTCAGTTAATATTCAAACTGAGAAGGCGGGTAGAAACCGTATTCTCTCAATTGAGTGGTCAGTTAAATGCAGAAAGAGTGTT
AGCCAAAAGCTTTCAGGGGTTATGTACCCGTCTGGTTAATAAAGTACTGGCATACAATCTCTGTATTGCATTGAATAGTATTTTCGGTGAAACCTGTGAA
CTTGGAAAAATCAAAAAATTGATATTCTAAAAATTTTATTTTTTAATATCTGTAAGGATTCTTTGCGGTTTTACAGGTTTTCACATAATCTATTTGAAGT
AGCACAATAGGT
TTCCAAGATAATAATACCACTGTTATTGCAACTTTTGAAGACTTTATTTTAACTGCTTACGTTATTATTGACGAATTGTATCATCAGTTTGCACCTCCAG
AAGTTACCAGACGACGGCATATCCTGAATGCAAAATTATCTGACTCAGAAATCATTACTATCAGTCTCTGCGGAGAATTGGCAGGCGTTGATTCTGAGAA
TGCATGGTTTTCTTTTGTGAAACGAAACTACAGGCATCTTTTTCCGCAGCTTTGCAGCAGAAGTCGTTTTAACAGAACGAGACGCGCCCTGATGCAGACA
ACAGAATTGTTACGACAAAAAATGATTTCCGTATTCCCAATTCCAGTCAGTTCCTATTACATCGTCGATAGTTTTCCACTTGCAGTCTGTAAATTTGGAC
GTGCACGATATTGTAAAGCATTTCGTGGCCATGGTGCTGATTATGGAAAATGTCCTTCCAAAAAAGAAACCTATTATGGATATAAAGTACATGCATTAAT
TACATTAGAAGGATACATTGCATCATTTGAGATCACACCGGCATCTACAGATGATCGTGAAGGATTACGTGATCTGGCAGACCATTGGTCTAATGTTACA
ATTTTAGCGGATAAAGGCTATGTTGGAAAAAACATGAAACAGGAAATGCAGGAAAAAAATATCTGTCTTTTTGCTCTGAAACGTTCCAACAGTAAGGAAA
ATTGGCCGAAATCCGTACGTCAGTTAATATTCAAACTGAGAAGGCGGGTAGAAACCGTATTCTCTCAATTGAGTGGTCAGTTAAATGCAGAAAGAGTGTT
AGCCAAAAGCTTTCAGGGGTTATGTACCCGTCTGGTTAATAAAGTACTGGCATACAATCTCTGTATTGCATTGAATAGTATTTTCGGTGAAACCTGTGAA
CTTGGAAAAATCAAAAAATTGATATTCTAAAAATTTTATTTTTTAATATCTGTAAGGATTCTTTGCGGTTTTACAGGTTTTCACATAATCTATTTGAAGT
AGCACAATAGGT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 939 bp | 312 aa | 92 | 1030 | + | No |
Chemistry : DDE
ORF sequence :
MLKFQDNNTTVIATFEDFILTAYVIIDELYHQFAPPEVTRRRHILNAKLSDSEIITISLCGELAGVDSENAWFSFVKRNYRHLFPQLCSRSRFNRTRRAL
MQTTELLRQKMISVFPIPVSSYYIVDSFPLAVCKFGRARYCKAFRGHGADYGKCPSKKETYYGYKVHALITLEGYIASFEITPASTDDREGLRDLADHWS
NVTILADKGYVGKNMKQEMQEKNICLFALKRSNSKENWPKSVRQLIFKLRRRVETVFSQLSGQLNAERVLAKSFQGLCTRLVNKVLAYNLCIALNSIFGE
TCELGKIKKLIF
MQTTELLRQKMISVFPIPVSSYYIVDSFPLAVCKFGRARYCKAFRGHGADYGKCPSKKETYYGYKVHALITLEGYIASFEITPASTDDREGLRDLADHWS
NVTILADKGYVGKNMKQEMQEKNICLFALKRSNSKENWPKSVRQLIFKLRRRVETVFSQLSGQLNAERVLAKSFQGLCTRLVNKVLAYNLCIALNSIFGE
TCELGKIKKLIF
Blast result :
Comments
ISRmsp1 is 68% aa similar to ISCth1.
References
1] ISfinder annotation (2009)
2] Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Ambrose,C., Lander,E., Nusbaum,C., Galagan,J. and Birren,B. (2009) Direct submission GenBank.
2] Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Ambrose,C., Lander,E., Nusbaum,C., Galagan,J. and Birren,B. (2009) Direct submission GenBank.