ISFba2

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAXX01000004 ND Flavobacteria bacterium
Flavobacteria bacterium BAL38
DNA section
IS Length : 998 bp

Ends


IR Length : 18

IRL : ACCCGTTGGGTGAAATTATTTGAAGTAAAATAAATTGAACAAATGTTGGT
IRR : ACCCGTTGGGTGAAATTAAATTAATTGATTTTTGATTTTATTTATTGGTC

Insertion site


Left flankDirect repeatRight flankDR Length
ATTATTATTATAACTTAGTA0

DNA sequence

ACCCGTTGGGTGAAATTATTTGAAGTAAAATAAATTGAACAAATGTTGGTCAAGATACTGAAATTCAGTATCTTGAAGTCGCAAAACAACCAACATTTAT
TACAAATATAGTAAAAAATTATTTTAGAGTTTTAGAAATTTTATGTTCTTTGAATTTTGAGTTAGAGTTTAAATCAGGAATTGGCAGAAAACCAAAAATG
ACTGATTTAGAGGTGGTTGCCTTGAGTCTGACAGCTGAATTCATGTCGATTGATAGTGAAAATTCACTTTTCAAACAGATTTCTCTATGCGAAATCCCAA
ATTTAATTGAGCGAAGTCAGTTTAATAAAAGACGAAAAAAGCTGTTTTTGTTTTCAGAACAAATTAGAACAAAATTGGCTGCTCAATTTCTACGTTTTGA
AGATTACTTTATTATCGACAGCATGCCTTTAGAGATTTGTAAATTTTCACGTCACAACAGAATAAAAATCTGTAAAGACGATTTTGAAACGGCACCTTCC
AAAGGTTTTTGTGCTTCCCAAAACAATTGGTTTTTCGGATACAAACTTCATGGTGTTTGTTCTGTTACTGGTGTTTTTCATTCATTAGATATTACCAAAG
CAGAAGTTCATGATGTTCATTTTTTGAAAAATATAAAACAACAAATGTCTGATTGTGTGTTACTTGGAGATAGAGGGTGTCTGTCGGAAAGCATTCAATT
GGATTTATTTCAATCGGTAAATATAAAATTGGAAACACCAAAAAGAATGAATCAACTGAATTATAAACCACAACCGTACATATTCAGAAAATCTAGAAAA
AGAATAGAAACATTGTTTTCCCAACTATGCGACCAATTCTTGATTAGAAGAAATTATGCTAAAACTTTTGAAGGATTTAAAACAAGGATTTTAGCCAAAA
TAACCGCACTAACTCTTGTTCAATATATCAATAAGTTTATCTTTGATAGACCAATAAATAAAATCAAAAATCAATTAATTTAATTTCACCCAACGGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
833 bp277 aa150982+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VNFELEFKSGIGRKPKMTDLEVVALSLTAEFMSIDSENSLFKQISLCEIPNLIERSQFNKRRKKLFLFSEQIRTKLAAQFLRFEDYFIIDSMPLEICKFS
RHNRIKICKDDFETAPSKGFCASQNNWFFGYKLHGVCSVTGVFHSLDITKAEVHDVHFLKNIKQQMSDCVLLGDRGCLSESIQLDLFQSVNIKLETPKRM
NQLNYKPQPYIFRKSRKRIETLFSQLCDQFLIRRNYAKTFEGFKTRILAKITALTLVQYINKFIFDRPINKIKNQLI

 

Blast result :
Comments
ISFba2 is 78% aa similar to ISRa1.
References
1] ISfinder annotation (2009)
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.