ISFba2
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAXX01000004 | ND | Flavobacteria bacterium | Flavobacteria bacterium BAL38 |
DNA section
IS Length : 998 bp
Ends
IR Length : 18
IRL : ACCCGTTGGGTGAAATTATTTGAAGTAAAATAAATTGAACAAATGTTGGT
IRR : ACCCGTTGGGTGAAATTAAATTAATTGATTTTTGATTTTATTTATTGGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTATTATTA | TAACTTAGTA | 0 |
DNA sequence
ACCCGTTGGGTGAAATTATTTGAAGTAAAATAAATTGAACAAATGTTGGTCAAGATACTGAAATTCAGTATCTTGAAGTCGCAAAACAACCAACATTTAT
TACAAATATAGTAAAAAATTATTTTAGAGTTTTAGAAATTTTATGTTCTTTGAATTTTGAGTTAGAGTTTAAATCAGGAATTGGCAGAAAACCAAAAATG
ACTGATTTAGAGGTGGTTGCCTTGAGTCTGACAGCTGAATTCATGTCGATTGATAGTGAAAATTCACTTTTCAAACAGATTTCTCTATGCGAAATCCCAA
ATTTAATTGAGCGAAGTCAGTTTAATAAAAGACGAAAAAAGCTGTTTTTGTTTTCAGAACAAATTAGAACAAAATTGGCTGCTCAATTTCTACGTTTTGA
AGATTACTTTATTATCGACAGCATGCCTTTAGAGATTTGTAAATTTTCACGTCACAACAGAATAAAAATCTGTAAAGACGATTTTGAAACGGCACCTTCC
AAAGGTTTTTGTGCTTCCCAAAACAATTGGTTTTTCGGATACAAACTTCATGGTGTTTGTTCTGTTACTGGTGTTTTTCATTCATTAGATATTACCAAAG
CAGAAGTTCATGATGTTCATTTTTTGAAAAATATAAAACAACAAATGTCTGATTGTGTGTTACTTGGAGATAGAGGGTGTCTGTCGGAAAGCATTCAATT
GGATTTATTTCAATCGGTAAATATAAAATTGGAAACACCAAAAAGAATGAATCAACTGAATTATAAACCACAACCGTACATATTCAGAAAATCTAGAAAA
AGAATAGAAACATTGTTTTCCCAACTATGCGACCAATTCTTGATTAGAAGAAATTATGCTAAAACTTTTGAAGGATTTAAAACAAGGATTTTAGCCAAAA
TAACCGCACTAACTCTTGTTCAATATATCAATAAGTTTATCTTTGATAGACCAATAAATAAAATCAAAAATCAATTAATTTAATTTCACCCAACGGGT
TACAAATATAGTAAAAAATTATTTTAGAGTTTTAGAAATTTTATGTTCTTTGAATTTTGAGTTAGAGTTTAAATCAGGAATTGGCAGAAAACCAAAAATG
ACTGATTTAGAGGTGGTTGCCTTGAGTCTGACAGCTGAATTCATGTCGATTGATAGTGAAAATTCACTTTTCAAACAGATTTCTCTATGCGAAATCCCAA
ATTTAATTGAGCGAAGTCAGTTTAATAAAAGACGAAAAAAGCTGTTTTTGTTTTCAGAACAAATTAGAACAAAATTGGCTGCTCAATTTCTACGTTTTGA
AGATTACTTTATTATCGACAGCATGCCTTTAGAGATTTGTAAATTTTCACGTCACAACAGAATAAAAATCTGTAAAGACGATTTTGAAACGGCACCTTCC
AAAGGTTTTTGTGCTTCCCAAAACAATTGGTTTTTCGGATACAAACTTCATGGTGTTTGTTCTGTTACTGGTGTTTTTCATTCATTAGATATTACCAAAG
CAGAAGTTCATGATGTTCATTTTTTGAAAAATATAAAACAACAAATGTCTGATTGTGTGTTACTTGGAGATAGAGGGTGTCTGTCGGAAAGCATTCAATT
GGATTTATTTCAATCGGTAAATATAAAATTGGAAACACCAAAAAGAATGAATCAACTGAATTATAAACCACAACCGTACATATTCAGAAAATCTAGAAAA
AGAATAGAAACATTGTTTTCCCAACTATGCGACCAATTCTTGATTAGAAGAAATTATGCTAAAACTTTTGAAGGATTTAAAACAAGGATTTTAGCCAAAA
TAACCGCACTAACTCTTGTTCAATATATCAATAAGTTTATCTTTGATAGACCAATAAATAAAATCAAAAATCAATTAATTTAATTTCACCCAACGGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
833 bp | 277 aa | 150 | 982 | + | No |
Chemistry : DDE
ORF sequence :
VNFELEFKSGIGRKPKMTDLEVVALSLTAEFMSIDSENSLFKQISLCEIPNLIERSQFNKRRKKLFLFSEQIRTKLAAQFLRFEDYFIIDSMPLEICKFS
RHNRIKICKDDFETAPSKGFCASQNNWFFGYKLHGVCSVTGVFHSLDITKAEVHDVHFLKNIKQQMSDCVLLGDRGCLSESIQLDLFQSVNIKLETPKRM
NQLNYKPQPYIFRKSRKRIETLFSQLCDQFLIRRNYAKTFEGFKTRILAKITALTLVQYINKFIFDRPINKIKNQLI
RHNRIKICKDDFETAPSKGFCASQNNWFFGYKLHGVCSVTGVFHSLDITKAEVHDVHFLKNIKQQMSDCVLLGDRGCLSESIQLDLFQSVNIKLETPKRM
NQLNYKPQPYIFRKSRKRIETLFSQLCDQFLIRRNYAKTFEGFKTRILAKITALTLVQYINKFIFDRPINKIKNQLI
Blast result :
Comments
ISFba2 is 78% aa similar to ISRa1.
References
1] ISfinder annotation (2009)
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.