ISMno19

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011892 ND Methylobacterium nodulans
Methylobacterium nodulans ORS 2060 plasmid pMNOD01
DNA section
IS Length : 1138 bp

Ends


IR Length : 20/26

IRL : GTGCACTGACGCATTCAGAGGATTCACCTCGGCCGTGAGCCGTGCGAGTC
IRR : GTGCACTGACTCAAACAGATGGTGCAGCATTGCGGTTGACGGCGTCGAAG

Insertion site


Left flankDirect repeatRight flankDR Length
GTCAACGACCTAGCGAGTTTCG2

DNA sequence

GTGCACTGACGCATTCAGAGGATTCACCTCGGCCGTGAGCCGTGCGAGTCTGAAGGCATGGCTCAGACCGTCTGTGTGATCCCGAGTGACGCCGATCTGG
CGCGCCTGTCGGCCATCGTCAATGACCGCGCTCGTCCCCTCAAGCACCTCCAGTGCGCCCACATCATCCTGCTCTCGGCCGAGCGCTTGGCTGTCCTGGA
GGTTGCCCAGCGGGCGGGCGTCAGCCGACCCGCCGTCTGGCGCTGGCAGCAACGCTACGCCGAGGAGGGCGTAGACGGCCTCTTGCGCGACAAGACCCGC
CCGCCCGGCAAGCCGCCCCACTCCACCGACACGGTCGCCGAGGTTCTGGCGCTGACCTGCTCCGAACCGCCCGGCGCGGTCACCCACTGGACCGGCCGCG
CCGTCGCTGACACGGTCGGGATCTCACTGCGCTCCGTCCAGCGCATCTGGGACGCGCATCGCCTGCAGCCGCACCGGGTGCGCAGCTTCAAGCGCTCCTC
CGATCCCGCCTTCGCCGAGAAGGTGGAGGACATTGTCGGCCTGGACATGGACCCGCCGCGCCATGCGGTCGTGCTCTCGCTGGACGAGACGTCCCAGATC
CAGGCGCTGGAACGCACCCGCCCCAGCCGAGCTGTGAAGCCGGGTCGGCCCGAGACCCAGACCCACGACGATCACCGGCACGGCACGACCACGCTGTTTG
CAGCCCTCAACGTCCTGGAGGGCACCGTGATCGGCCGCTGTATGCAGCGGCATCGCCATGACGAGTTCCTGCGCTTCCTCAACACCATCGAGGCGGCGGT
GCCAGGAGGCGAAGCTGATCCACGTGATCCTGGACAACTATGCTACCCACAAGCACCCGAAAGTGCGCGCTTGGCTGGCGCGGCATCCGCGTTGGACCTT
CCACTTCTTCCCGACCTCTGGCTCGTGGATAATGCTGTTGAGGGCTTCTTCTCGGCTCTCACCCAGCGACGGCTCAGGCGTGGCAGCTTCAGCGGGATCG
TGGATCTCCAGGCGGCGATCAACCGCTCCATCGCCGAGCACAACGACAGGCCGAAGCCTTTCGTCTGGACCAAGCCGGCCGCGGCCATCTTCGACGCCGT
CAACCGCAATGCTGCACCATCTGTTTGAGTCAGTGCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1071 bp356 aa581128+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAQTVCVIPSDADLARLSAIVNDRARPLKHLQCAHIILLSAERLAVLEVAQRAGVSRPAVWRWQQRYAEEGVDGLLRDKTRPPGKPPHSTDTVAEVLALT
CSEPPGAVTHWTGRAVADTVGISLRSVQRIWDAHRLQPHRVRSFKRSSDPAFAEKVEDIVGLDMDPPRHAVVLSLDETSQIQALERTRPSRAVKPGRPET
QTHDDHRHGTTTLFAALNVLEGTVIGRCMQRHRHDEFLRFLNTIEAAVPGGEADPRDPGQLCYPQAPESARLAGAASALDLPLLPDLWLVDNAVEGFFSA
LTQRRLRRGSFSGIVDLQAAINRSIAEHNDRPKPFVWTKPAAAIFDAVNRNAAPSV

 

Blast result :
Comments
ISMno19 is 72% aa similar to ISAzba6.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.