ISMno17
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 |
DNA section
IS Length : 1534 bp
Ends
IR Length : 22/32
IRL : GGGGCTGTTGAAGAACCCGGCATGTGACGGCACCGAGCAGTGGTTCAGCG
IRR : GGGGCTGTTGATAAAGTCTCGGCTGCGATGGCGAGTGATCCTGCGGCCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCGCCTCAGC | AATCT | CCACAGGATG | 5 |
| CGATGAGTGG | GCGGT | GCAGCGCTGC | 5 |
| CATGAAGTGC | ACCCG | ACCCGACAGC | 5 |
DNA sequence
GGGGCTGTTGAAGAACCCGGCATGTGACGGCACCGAGCAGTGGTTCAGCGGCCGACGATGGCAATCAGCGCGAGGGCCGGCCGAACGGACCGGGCGGGCT
CTTCTCCCGTGCGGACGAGGTCCAGCAGCCCCAAGAAGTGGAGCAGGACACGCCAAAGCGAAGCCGCGAGGCGCTTCAGGTTCACCGCGGCTGCGGTCAG
GAACGCTTGGATGCGCATGTTCGCCAGCCCGCGACGCACGGCACGCGCGAGCCCGTGCCACGTCTTAGCCTCGCCGTGGAAGCCTTCCGACCGCCAACGG
TGGCGCTGGTAGAGGCGCTGGTCCTCGGCCGACCAGCGTTCGCGCCGCCGTCGTGCCCGCAACAGGGCCGGATAGTCCGCGCTGATCATCACCGCGCGGG
CACTGCGCCCGCGGGGAAGACAGAGCTTCGCCAGCGAACAGGATCGGCAGTCACGGCTGCGCGCCACGAAGAAACGGCCATGCTTCTGGACCTTGCCAGG
CGTGAGGATTTTGCCGCGCGGGCACGTCACGATGTTGTGGCGTGCGTCGTAGCGGAAGCGGCGCAGCGGCACGGCCGAGCGGATCGGCTCGGCCTTGGTT
GGGATGAGTGGGTCGATGCCGCGCCGCTCCAGCCCGCCGTAGACCTTGGCGTAGGCGTAGCCCGCGTCCGCCGTCGCGGTGACGATGGCCTGTCCCGTCG
TCGCGGCGGTCGCATCCAGGCGCGCTAGGATGACCTGCCCCTCGTTCAGCTCACCGGTGGTGACCTCAACGTCGAGCACCACGCCGCGCACGTCATCGAC
GACCGCATGCTGCTTGTAGGCAGGTTCCAGGCGGCGATTGCGCGCGTTCGTGGCCATCGTCGCATCGGGATCAGTCGGGCAGACCTTCTTATAGCGGCCG
GTCTGCTTCGCGTTGCGCTCGGCGAGTGCAGCCGCGTCGCTGTTGCTCTCGGCCACGGCTTCCACGTGCTCGGCAACGAGGCTCTCCCAGCTCACGTCGG
CGCGGATCAGTGAGGCGTCGACATGCACGACCTCGCCCTTGGCGATCCCAGCTGACACGCAGGCCTGCACCGTGCGCTGGAAGATGCGCTGGAAGCGCTC
GGCCCCCCAGCGGCTGCGGATGCGCGTCAGAGTCGAGTGGTCCGGCAGCGCCTCGTGCAGGCCGTAGCCTGCGAACCAGCGGATGGCGAGGTTGACCTGC
GCCTCCCGCAACAGGCGCCGGTCGTGCACGATCCCGAGCAGGAAGCCAGCCAACATCAGCCGCAAGGCGGCCTCCGGGTCGATGCCGGGCCGACCGTTGT
CCGCGCAATAGAGGTCGGCGACCTCAGCCCGCAGCCATGCGAGATCGAGGACGCGGTCGACGCGCACCAGGATGTGGTCGTCGGGGAGGAGTTGGCGCAG
CGAGCCCGTAATGAAGAGCTCGCCCTGATCGCGTTCCTTGTGGCCGAGCATGCGCAGCTCTCCGGCAGCCTCGGCGAAGTGAATCAGGCCGCAGGATCAC
TCGCCATCGCAGCCGAGACTTTATCAACAGCCCC
CTTCTCCCGTGCGGACGAGGTCCAGCAGCCCCAAGAAGTGGAGCAGGACACGCCAAAGCGAAGCCGCGAGGCGCTTCAGGTTCACCGCGGCTGCGGTCAG
GAACGCTTGGATGCGCATGTTCGCCAGCCCGCGACGCACGGCACGCGCGAGCCCGTGCCACGTCTTAGCCTCGCCGTGGAAGCCTTCCGACCGCCAACGG
TGGCGCTGGTAGAGGCGCTGGTCCTCGGCCGACCAGCGTTCGCGCCGCCGTCGTGCCCGCAACAGGGCCGGATAGTCCGCGCTGATCATCACCGCGCGGG
CACTGCGCCCGCGGGGAAGACAGAGCTTCGCCAGCGAACAGGATCGGCAGTCACGGCTGCGCGCCACGAAGAAACGGCCATGCTTCTGGACCTTGCCAGG
CGTGAGGATTTTGCCGCGCGGGCACGTCACGATGTTGTGGCGTGCGTCGTAGCGGAAGCGGCGCAGCGGCACGGCCGAGCGGATCGGCTCGGCCTTGGTT
GGGATGAGTGGGTCGATGCCGCGCCGCTCCAGCCCGCCGTAGACCTTGGCGTAGGCGTAGCCCGCGTCCGCCGTCGCGGTGACGATGGCCTGTCCCGTCG
TCGCGGCGGTCGCATCCAGGCGCGCTAGGATGACCTGCCCCTCGTTCAGCTCACCGGTGGTGACCTCAACGTCGAGCACCACGCCGCGCACGTCATCGAC
GACCGCATGCTGCTTGTAGGCAGGTTCCAGGCGGCGATTGCGCGCGTTCGTGGCCATCGTCGCATCGGGATCAGTCGGGCAGACCTTCTTATAGCGGCCG
GTCTGCTTCGCGTTGCGCTCGGCGAGTGCAGCCGCGTCGCTGTTGCTCTCGGCCACGGCTTCCACGTGCTCGGCAACGAGGCTCTCCCAGCTCACGTCGG
CGCGGATCAGTGAGGCGTCGACATGCACGACCTCGCCCTTGGCGATCCCAGCTGACACGCAGGCCTGCACCGTGCGCTGGAAGATGCGCTGGAAGCGCTC
GGCCCCCCAGCGGCTGCGGATGCGCGTCAGAGTCGAGTGGTCCGGCAGCGCCTCGTGCAGGCCGTAGCCTGCGAACCAGCGGATGGCGAGGTTGACCTGC
GCCTCCCGCAACAGGCGCCGGTCGTGCACGATCCCGAGCAGGAAGCCAGCCAACATCAGCCGCAAGGCGGCCTCCGGGTCGATGCCGGGCCGACCGTTGT
CCGCGCAATAGAGGTCGGCGACCTCAGCCCGCAGCCATGCGAGATCGAGGACGCGGTCGACGCGCACCAGGATGTGGTCGTCGGGGAGGAGTTGGCGCAG
CGAGCCCGTAATGAAGAGCTCGCCCTGATCGCGTTCCTTGTGGCCGAGCATGCGCAGCTCTCCGGCAGCCTCGGCGAAGTGAATCAGGCCGCAGGATCAC
TCGCCATCGCAGCCGAGACTTTATCAACAGCCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1407 bp | 468 aa | 84 | 1490 | + | No |
Chemistry : DDE
ORF sequence :
MLGHKERDQGELFITGSLRQLLPDDHILVRVDRVLDLAWLRAEVADLYCADNGRPGIDPEAALRLMLAGFLLGIVHDRRLLREAQVNLAIRWFAGYGLHE
ALPDHSTLTRIRSRWGAERFQRIFQRTVQACVSAGIAKGEVVHVDASLIRADVSWESLVAEHVEAVAESNSDAAALAERNAKQTGRYKKVCPTDPDATMA
TNARNRRLEPAYKQHAVVDDVRGVVLDVEVTTGELNEGQVILARLDATAATTGQAIVTATADAGYAYAKVYGGLERRGIDPLIPTKAEPIRSAVPLRRFR
YDARHNIVTCPRGKILTPGKVQKHGRFFVARSRDCRSCSLAKLCLPRGRSARAVMISADYPALLRARRRRERWSAEDQRLYQRHRWRSEGFHGEAKTWHG
LARAVRRGLANMRIQAFLTAAAVNLKRLAASLWRVLLHFLGLLDLVRTGEEPARSVRPALALIAIVGR
ALPDHSTLTRIRSRWGAERFQRIFQRTVQACVSAGIAKGEVVHVDASLIRADVSWESLVAEHVEAVAESNSDAAALAERNAKQTGRYKKVCPTDPDATMA
TNARNRRLEPAYKQHAVVDDVRGVVLDVEVTTGELNEGQVILARLDATAATTGQAIVTATADAGYAYAKVYGGLERRGIDPLIPTKAEPIRSAVPLRRFR
YDARHNIVTCPRGKILTPGKVQKHGRFFVARSRDCRSCSLAKLCLPRGRSARAVMISADYPALLRARRRRERWSAEDQRLYQRHRWRSEGFHGEAKTWHG
LARAVRRGLANMRIQAFLTAAAVNLKRLAASLWRVLLHFLGLLDLVRTGEEPARSVRPALALIAIVGR
Blast result :
Comments
ISMno17 is 50% aa similar to ISBma2.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.