ISMno27
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 |
DNA section
IS Length : 893 bp
Ends
IR Length : 16/18
IRL : GGGCTTGTCGCAAACGCGAACGGGCCCGCGTTCACGGGTCGTTAGGCATA
IRR : GGGCGTGTCGCAAACTCGGGACCGGGACGCAGAAGGAGCTACCCGTCCCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGCTTGGGCG | GCCGCTGCTT | 0 |
DNA sequence
GGGCTTGTCGCAAACGCGAACGGGCCCGCGTTCACGGGTCGTTAGGCATACCCGGCCAGCTTGCCGCCTCCGCTCGGAGCCGGCCCATGATCCTGAACGC
CCTTACCCTCAAGCTGAAGAGACAGGCCCGCGACGCCTTCAAGGGCCGGCATTTCGAGGCGACGCTGATCGTGCAGGCCGTCTCCTGGTTCCTGCGCGAC
GCGCTGAGCTACCGCGACATCGAGGAGATGCTCCTGGAGCGCGGCTTGGAGGTCGACCACTCCACCCTCAACCGCTGGGTGCTCGCCTACGCGCCCGCCA
TCGAGCGTCGCCTGCGCCGGTTCCGCAAGCCGCACTGCGGGTCGGTCCGCGTGGACGAGACGTACATCCGCGTCCGGGGTCAGTGGCGCTCCCTGGACCG
GGCCATCGACAAGCATGGCGAGGTGGTCGACTTCCTGCTCACCGCCAACCGCGACCTGGGTGCGGCCAAGCGCTTCTTCCGCAAGATGCTCTCGGCCGAG
CCGCTGCTCGCCCCGGATCGGATCGGCACCGACGGCGCTGGTCCTTACCCGCCAGCTATCGCCGAGAGCCGCAAGGAGGGCCTGCTGCCGCGCGCTCCGA
CCCACCACGTCACCAAGCACCTGCAGCAGGGGATTGTGAGTGACCACTTCCGGGTGAAGAGGCCGATGCCCCGCGTGGGCGGGTTCCGGTCGTTCAAGAC
GGCCCGGCGCACAATCCAGGGCTTCGAGGCGATGCTGTGGCTTCGCAAGGGCTTCGGGTTCTCAGGCGCATGGACCATGCGCGAGCAGAACCAGCTGCTG
GCCTCCTGCTTCGGGCTTCCCGTCGCGAACACAGCGTGAAAGCGGGGACGGGTAGCTCCTTCTGCGTCCCGGTCCCGAGTTTGCGACACGCCC
CCTTACCCTCAAGCTGAAGAGACAGGCCCGCGACGCCTTCAAGGGCCGGCATTTCGAGGCGACGCTGATCGTGCAGGCCGTCTCCTGGTTCCTGCGCGAC
GCGCTGAGCTACCGCGACATCGAGGAGATGCTCCTGGAGCGCGGCTTGGAGGTCGACCACTCCACCCTCAACCGCTGGGTGCTCGCCTACGCGCCCGCCA
TCGAGCGTCGCCTGCGCCGGTTCCGCAAGCCGCACTGCGGGTCGGTCCGCGTGGACGAGACGTACATCCGCGTCCGGGGTCAGTGGCGCTCCCTGGACCG
GGCCATCGACAAGCATGGCGAGGTGGTCGACTTCCTGCTCACCGCCAACCGCGACCTGGGTGCGGCCAAGCGCTTCTTCCGCAAGATGCTCTCGGCCGAG
CCGCTGCTCGCCCCGGATCGGATCGGCACCGACGGCGCTGGTCCTTACCCGCCAGCTATCGCCGAGAGCCGCAAGGAGGGCCTGCTGCCGCGCGCTCCGA
CCCACCACGTCACCAAGCACCTGCAGCAGGGGATTGTGAGTGACCACTTCCGGGTGAAGAGGCCGATGCCCCGCGTGGGCGGGTTCCGGTCGTTCAAGAC
GGCCCGGCGCACAATCCAGGGCTTCGAGGCGATGCTGTGGCTTCGCAAGGGCTTCGGGTTCTCAGGCGCATGGACCATGCGCGAGCAGAACCAGCTGCTG
GCCTCCTGCTTCGGGCTTCCCGTCGCGAACACAGCGTGAAAGCGGGGACGGGTAGCTCCTTCTGCGTCCCGGTCCCGAGTTTGCGACACGCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 753 bp | 250 aa | 87 | 839 | + | No |
Chemistry : DDE
ORF sequence :
MILNALTLKLKRQARDAFKGRHFEATLIVQAVSWFLRDALSYRDIEEMLLERGLEVDHSTLNRWVLAYAPAIERRLRRFRKPHCGSVRVDETYIRVRGQW
RSLDRAIDKHGEVVDFLLTANRDLGAAKRFFRKMLSAEPLLAPDRIGTDGAGPYPPAIAESRKEGLLPRAPTHHVTKHLQQGIVSDHFRVKRPMPRVGGF
RSFKTARRTIQGFEAMLWLRKGFGFSGAWTMREQNQLLASCFGLPVANTA
RSLDRAIDKHGEVVDFLLTANRDLGAAKRFFRKMLSAEPLLAPDRIGTDGAGPYPPAIAESRKEGLLPRAPTHHVTKHLQQGIVSDHFRVKRPMPRVGGF
RSFKTARRTIQGFEAMLWLRKGFGFSGAWTMREQNQLLASCFGLPVANTA
Blast result :
Comments
ISMno27 is 93% aa similar to ISMtsp1. IRL was interrupted by ISMno26 (IS110 family)
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.