ISMno26
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 |
DNA section
IS Length : 1353 bp
Ends
IR Length : 15/22
IRL : tgatgggGTGGACGGCCCCTGCTCACGGCATCGCTGTGCCAGGATGAGGC
IRR : ----tgtGTGGACGGCCCCTGCGGTGCAAGTGGAAAGGGATGCTGCCCAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGCGGGGCTT | TGTCGCAAAC | 0 | |
| GGCCGGGCCT | GAGGGCGGCG | 0 |
DNA sequence
TGATGGGGTGGACGGCCCCTGCTCACGGCATCGCTGTGCCAGGATGAGGCCGCTGGTTCTCATCATCAGGAGCCGTCCATGGCACAGGTCAGCACCATCG
GCCTCGATCTGGCGAAGACCGTCTTCCAGGTCCACGGCATCGACGCTCAAGGCGAGGTCATCGTGCGCCGACCTTTGCGTCGAGCCGAGGTCCTGCCTTT
CTTTGCCAAGCTTTCACCTGGCCTGGTCGGCATGGAGGCTTGTGGACCGGCACACGACTGGGCTCGCCAACTGATTAAGCTCGGGCATATCGTGAGGCTC
ATGCCGCCAGCCTCCGTAAAGCCGTACGTCAAGCGTGGCAAATCCGATGCGGCCGATGCCGAGGCCATTGCAGAAGCCGTGCGCCGCCCGACCATGCGCT
GTGTCGCCGTCAAGACCGTCGATCAGCAGGCCGTGCTCATGCTGCACAAGGGGCGCGATCTGCTCGTCCGGCAGCGCACCCTGCTGATCAACGCCTTGCG
GGGGCATCTGGCCGAGTTCGGGATCGTGGCGGCGCAGGGGCCCGCCGGCGTGAAGAGCGCCATCGCGCAGTTCAGGACCGATCAGGCCAGCCTGCCGGAG
TTGGCCCGATCGGCGATCCGCCGCCTCATCGGCCAGAGCGAGGAGGTCGCCGAGCAGCTGAGAAGCGCCGAGACCGAGATCGTCGCCTGGTGCCGCAGCG
ACGCTGCGAGCCGCCGTCTGCTGACCATCCCCGGCATCGGCCCGATCACCGCCAGCGCGATCGCGGCGGCCGTGCCCGACCCCACCCTCTTCCGGTCCGG
CCGGCAGTTCGCAGCCTGGCTCGGCCTCACGCCTCGACCGCAGAGCAGCGGTGGCAAGGATCGGCTCGGGGGCATCAGCAAGCAGGGCGACGGAACGATC
CGCCGGCTGCTCGTCGGGGGGGCCACGGCGGTGATCCGAGTGGCGCGCCAAGACAACCCCGGTCGAGCCTGGGCCAAGCGGCTCTTGGAGCGCAAGCCCG
CGCGGGTCGTGTCCGTCGCCTTGGCCAACAAGACCGCCCGGATTGCCTGGGCGGTGATGACGCGCGGCGACGTCTACAGAGCGCCCGCCGTCTGACAAGA
TCCCGTCTGCCGGCTCTCTCGCCGGCGACGGGGGTGCAAGCTGCTGAGAGGTGATGACGAACCGGTCGAGCCGGGATTGAGGGGAGCCCGCTTTGCGACA
TGCGCGTCACAGCGCGCTGGCTTGATGGGGACCTCGATCGCGGACTTCATCAGGGCCAGCGGCCATGAGCGCCGCGTCGACAGGCCGGACACATGACTGC
ACCCCGACTGGGCAGCATCCCTTTCCACTTGCACCGCAGGGGCCGTCCACACA
GCCTCGATCTGGCGAAGACCGTCTTCCAGGTCCACGGCATCGACGCTCAAGGCGAGGTCATCGTGCGCCGACCTTTGCGTCGAGCCGAGGTCCTGCCTTT
CTTTGCCAAGCTTTCACCTGGCCTGGTCGGCATGGAGGCTTGTGGACCGGCACACGACTGGGCTCGCCAACTGATTAAGCTCGGGCATATCGTGAGGCTC
ATGCCGCCAGCCTCCGTAAAGCCGTACGTCAAGCGTGGCAAATCCGATGCGGCCGATGCCGAGGCCATTGCAGAAGCCGTGCGCCGCCCGACCATGCGCT
GTGTCGCCGTCAAGACCGTCGATCAGCAGGCCGTGCTCATGCTGCACAAGGGGCGCGATCTGCTCGTCCGGCAGCGCACCCTGCTGATCAACGCCTTGCG
GGGGCATCTGGCCGAGTTCGGGATCGTGGCGGCGCAGGGGCCCGCCGGCGTGAAGAGCGCCATCGCGCAGTTCAGGACCGATCAGGCCAGCCTGCCGGAG
TTGGCCCGATCGGCGATCCGCCGCCTCATCGGCCAGAGCGAGGAGGTCGCCGAGCAGCTGAGAAGCGCCGAGACCGAGATCGTCGCCTGGTGCCGCAGCG
ACGCTGCGAGCCGCCGTCTGCTGACCATCCCCGGCATCGGCCCGATCACCGCCAGCGCGATCGCGGCGGCCGTGCCCGACCCCACCCTCTTCCGGTCCGG
CCGGCAGTTCGCAGCCTGGCTCGGCCTCACGCCTCGACCGCAGAGCAGCGGTGGCAAGGATCGGCTCGGGGGCATCAGCAAGCAGGGCGACGGAACGATC
CGCCGGCTGCTCGTCGGGGGGGCCACGGCGGTGATCCGAGTGGCGCGCCAAGACAACCCCGGTCGAGCCTGGGCCAAGCGGCTCTTGGAGCGCAAGCCCG
CGCGGGTCGTGTCCGTCGCCTTGGCCAACAAGACCGCCCGGATTGCCTGGGCGGTGATGACGCGCGGCGACGTCTACAGAGCGCCCGCCGTCTGACAAGA
TCCCGTCTGCCGGCTCTCTCGCCGGCGACGGGGGTGCAAGCTGCTGAGAGGTGATGACGAACCGGTCGAGCCGGGATTGAGGGGAGCCCGCTTTGCGACA
TGCGCGTCACAGCGCGCTGGCTTGATGGGGACCTCGATCGCGGACTTCATCAGGGCCAGCGGCCATGAGCGCCGCGTCGACAGGCCGGACACATGACTGC
ACCCCGACTGGGCAGCATCCCTTTCCACTTGCACCGCAGGGGCCGTCCACACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1017 bp | 338 aa | 79 | 1095 | + | No |
Chemistry : DEDD
ORF sequence :
MAQVSTIGLDLAKTVFQVHGIDAQGEVIVRRPLRRAEVLPFFAKLSPGLVGMEACGPAHDWARQLIKLGHIVRLMPPASVKPYVKRGKSDAADAEAIAEA
VRRPTMRCVAVKTVDQQAVLMLHKGRDLLVRQRTLLINALRGHLAEFGIVAAQGPAGVKSAIAQFRTDQASLPELARSAIRRLIGQSEEVAEQLRSAETE
IVAWCRSDAASRRLLTIPGIGPITASAIAAAVPDPTLFRSGRQFAAWLGLTPRPQSSGGKDRLGGISKQGDGTIRRLLVGGATAVIRVARQDNPGRAWAK
RLLERKPARVVSVALANKTARIAWAVMTRGDVYRAPAV
VRRPTMRCVAVKTVDQQAVLMLHKGRDLLVRQRTLLINALRGHLAEFGIVAAQGPAGVKSAIAQFRTDQASLPELARSAIRRLIGQSEEVAEQLRSAETE
IVAWCRSDAASRRLLTIPGIGPITASAIAAAVPDPTLFRSGRQFAAWLGLTPRPQSSGGKDRLGGISKQGDGTIRRLLVGGATAVIRVARQDNPGRAWAK
RLLERKPARVVSVALANKTARIAWAVMTRGDVYRAPAV
Blast result :
Comments
ISMno26 is 75% aa similar to ISCc4.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.