ISMno15
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011892 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 plasmid pMNOD01 |
DNA section
IS Length : 1561 bp
Ends
IR Length : 16/20
IRL : GTGTGAGAACGCCTGATCTGCTAAGCTTGTCACCGCTCTGAGGAGGTCGG
IRR : GTGTGAGAACGCGGGTTTTGTCGACGTGGCTCATGGGTGAGCCTTGGCGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTCGTAAACCGACCGAGGCT | ATGGGGTAATCGCGGGAGCG | 0 | |
| GTCAGCCATTGCACGAGGCT | AGCCTGCACCCATACGAGAC | 0 |
DNA sequence
GTGTGAGAACGCCTGATCTGCTAAGCTTGTCACCGCTCTGAGGAGGTCGGGATGACCCGCTTCATCGCAGGTGAGGATCGTCAGCAGGTCACGCTCCTTC
CCGATTGCCTGGACGACTACGTCGCCGCGGACAATCCGGTCCGCCTCGCCGAGGCGTTCGTTGACGAACTCGACCTCGCCGCTCTCGGCTGTGCGGGAGC
TGTGCCGGAGGCGACCGGCCGTCCGGCCTACGATCCGGCGACGCTGCTCAAGCTCTACCTGTACGGCTACCTCAACCGCATCCCGTCGAGCCGCCGCTTG
GAACGCGAGAGCCCGCGCAACCTCGAGCTGATCTGGCTGACCGGCCGGCTGATGCCGGACTTCAAGACCCTGGCCGACTTCCGCAAGAACAATGGACCCG
CGATCCAGGCCACCTGCGCGCAATTCGTCGTCCTGTGCCGTCGGCTGAACCTGTTCAGCAAGGCCATCGTCGCGGTCGATGGCAGCAAGTTCAAGGCCGT
CAACAACCGCGACAAGAACTTCACGGTGGCCAAGCTCGAGGCCCGTGTGGCCCAGGTCGAGGCGAGCGTCGCCCGCTACCTCGCCGCCCTGGACCGGGCC
GACCGCGAGCCAAGCGATGTGGCCGAGGCTCGGACCGCACGGCTCACCGAGAAGATCGCAGCCCTGCGCGAGCAGATGCAGGATCTGCAGGCGATGCGGC
AGCGGGTCGAGGAGGCGCCCGACCAGCAGGTCGCGCTGACCGATCCCGACGCGCGCTCGCTGGCCACCCGCGGCAAGGGAACCGGTCTCGTCGGCTACAA
CGTTCAGGCGGCGGTCGATGTCGAGCACCACCTGATCGTGGCTCACGCCGTGACCAACGTCGGCAGCGATCGGGCCCAGCTCGCCCCGATGGGGGTCCTG
GCGCAGGAGGCGACCGGCTGCGAGCCGATTACGGTGCTGGCCGACCGGGGCTACCTCAACGGCGATCAGGTGCTGGTCTGCGAGGGCACCGGAGTGCTGC
CGTGCGTGCCCAAAACCTTGACTTCGGGCAACGTCAAACGCGGGCTCTTCACCGGGCAGGACTTCATCTACGACGCTCAGAAGGACCACTACACCTGTCC
TGCCGGTCAGCATCTGACGAAGGCCCCCGCCCGATCCGATCGTCGGGACGAGATCGACCATTATCGCAACCGGACGGCGTGCCCGGCCTGCGCGCTCAAG
CCTCGCTGCACGACGGAGGCGGCGCGGCGGATCAAGCGGTGGGTGCACGAGGGCGTGCTCGATGCGATGCAGGCGAGGCTTGATGGGATGCCGGACGCGA
TGAAGGTCCGCCGCCAGACCGTGGAGCACCCATTCGGCACGCTGAAGGCCTGGATGGGGGCTACGCACTTCCTGACCCGAACGCTAGCGAAGGTCAGAAC
CGAGATGAGCCTCCAGGTTCTCGCCTACAACATGAAGCGGATGATCCAGATCTTCGGGGTCGGAGCGCTGATCACGGCGATCCGGGCCTAAGCCCCGTAC
GCGCGAGCCCGCCGCCAAGGCTCACCCATGAGCCACGTCGACAAAACCCGCGTTCTCACAC
CCGATTGCCTGGACGACTACGTCGCCGCGGACAATCCGGTCCGCCTCGCCGAGGCGTTCGTTGACGAACTCGACCTCGCCGCTCTCGGCTGTGCGGGAGC
TGTGCCGGAGGCGACCGGCCGTCCGGCCTACGATCCGGCGACGCTGCTCAAGCTCTACCTGTACGGCTACCTCAACCGCATCCCGTCGAGCCGCCGCTTG
GAACGCGAGAGCCCGCGCAACCTCGAGCTGATCTGGCTGACCGGCCGGCTGATGCCGGACTTCAAGACCCTGGCCGACTTCCGCAAGAACAATGGACCCG
CGATCCAGGCCACCTGCGCGCAATTCGTCGTCCTGTGCCGTCGGCTGAACCTGTTCAGCAAGGCCATCGTCGCGGTCGATGGCAGCAAGTTCAAGGCCGT
CAACAACCGCGACAAGAACTTCACGGTGGCCAAGCTCGAGGCCCGTGTGGCCCAGGTCGAGGCGAGCGTCGCCCGCTACCTCGCCGCCCTGGACCGGGCC
GACCGCGAGCCAAGCGATGTGGCCGAGGCTCGGACCGCACGGCTCACCGAGAAGATCGCAGCCCTGCGCGAGCAGATGCAGGATCTGCAGGCGATGCGGC
AGCGGGTCGAGGAGGCGCCCGACCAGCAGGTCGCGCTGACCGATCCCGACGCGCGCTCGCTGGCCACCCGCGGCAAGGGAACCGGTCTCGTCGGCTACAA
CGTTCAGGCGGCGGTCGATGTCGAGCACCACCTGATCGTGGCTCACGCCGTGACCAACGTCGGCAGCGATCGGGCCCAGCTCGCCCCGATGGGGGTCCTG
GCGCAGGAGGCGACCGGCTGCGAGCCGATTACGGTGCTGGCCGACCGGGGCTACCTCAACGGCGATCAGGTGCTGGTCTGCGAGGGCACCGGAGTGCTGC
CGTGCGTGCCCAAAACCTTGACTTCGGGCAACGTCAAACGCGGGCTCTTCACCGGGCAGGACTTCATCTACGACGCTCAGAAGGACCACTACACCTGTCC
TGCCGGTCAGCATCTGACGAAGGCCCCCGCCCGATCCGATCGTCGGGACGAGATCGACCATTATCGCAACCGGACGGCGTGCCCGGCCTGCGCGCTCAAG
CCTCGCTGCACGACGGAGGCGGCGCGGCGGATCAAGCGGTGGGTGCACGAGGGCGTGCTCGATGCGATGCAGGCGAGGCTTGATGGGATGCCGGACGCGA
TGAAGGTCCGCCGCCAGACCGTGGAGCACCCATTCGGCACGCTGAAGGCCTGGATGGGGGCTACGCACTTCCTGACCCGAACGCTAGCGAAGGTCAGAAC
CGAGATGAGCCTCCAGGTTCTCGCCTACAACATGAAGCGGATGATCCAGATCTTCGGGGTCGGAGCGCTGATCACGGCGATCCGGGCCTAAGCCCCGTAC
GCGCGAGCCCGCCGCCAAGGCTCACCCATGAGCCACGTCGACAAAACCCGCGTTCTCACAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1440 bp | 479 aa | 52 | 1491 | + | No |
Chemistry : DDE
ORF sequence :
MTRFIAGEDRQQVTLLPDCLDDYVAADNPVRLAEAFVDELDLAALGCAGAVPEATGRPAYDPATLLKLYLYGYLNRIPSSRRLERESPRNLELIWLTGRL
MPDFKTLADFRKNNGPAIQATCAQFVVLCRRLNLFSKAIVAVDGSKFKAVNNRDKNFTVAKLEARVAQVEASVARYLAALDRADREPSDVAEARTARLTE
KIAALREQMQDLQAMRQRVEEAPDQQVALTDPDARSLATRGKGTGLVGYNVQAAVDVEHHLIVAHAVTNVGSDRAQLAPMGVLAQEATGCEPITVLADRG
YLNGDQVLVCEGTGVLPCVPKTLTSGNVKRGLFTGQDFIYDAQKDHYTCPAGQHLTKAPARSDRRDEIDHYRNRTACPACALKPRCTTEAARRIKRWVHE
GVLDAMQARLDGMPDAMKVRRQTVEHPFGTLKAWMGATHFLTRTLAKVRTEMSLQVLAYNMKRMIQIFGVGALITAIRA
MPDFKTLADFRKNNGPAIQATCAQFVVLCRRLNLFSKAIVAVDGSKFKAVNNRDKNFTVAKLEARVAQVEASVARYLAALDRADREPSDVAEARTARLTE
KIAALREQMQDLQAMRQRVEEAPDQQVALTDPDARSLATRGKGTGLVGYNVQAAVDVEHHLIVAHAVTNVGSDRAQLAPMGVLAQEATGCEPITVLADRG
YLNGDQVLVCEGTGVLPCVPKTLTSGNVKRGLFTGQDFIYDAQKDHYTCPAGQHLTKAPARSDRRDEIDHYRNRTACPACALKPRCTTEAARRIKRWVHE
GVLDAMQARLDGMPDAMKVRRQTVEHPFGTLKAWMGATHFLTRTLAKVRTEMSLQVLAYNMKRMIQIFGVGALITAIRA
Blast result :
Comments
ISMno15 is 75% aa similar to ISMpo6.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.