ISMsy1

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007294 ND Mycoplasma synoviae
Mycoplasma synoviae WVU1853
DNA section
IS Length : 1866 bp

Ends


IR Length : 17/20

IRL : CCTGAGTTTCCAAGTTGGAAGCTCTTTTTTATACCTTTTACCTTATTACT
IRR : CCTGCGTTTTCAAGTTGTAATGAAGAAAAAAACGAATACACCTATAAATA

Insertion site


Left flankDirect repeatRight flankDR Length
AAAAAAAAGAAAATAAAAAAAGAAAATAAAAAAC6
TTTATTTTTCGTTTTTTTAAAAAAAGCAAGCTTTT0
TAACTTTTCTCTTAGAAAAAATAAAAAAAATAAAC0
TAAAAATAAAAAACAAAAAATTTTAATACTGCTAA0

DNA sequence

CCTGAGTTTCCAAGTTGGAAGCTCTTTTTTATACCTTTTACCTTATTACTTATATACGTAGTATATAAGTACATTTTTTAATTATTTTAATTTTTTACAA
TGATTACAATGATAATAATGTATAATATAAATATGAGTAACTACATTCTGTATAAAAGAAAAAACCCAAAAGGGATTTACATTGCATTAGGAATATCAAA
AGGATACGGTAAAGGGATTGGTAATTTAGTTGGATTAGGTTATTGAGAAGAAATTAAAGAAAAATATTCTCTACAAAACATCGATGATTTAAAACAAATT
GCTAGATTGGTTCCTGTTGGAGAAGATAAAATTGAAGTTAAAACCAAATTTTTTCAATTGCTTAACCCGACATCTGTCGAAACAAATATAAAAAACGTTG
GTATTGAATTGATTTATAAAGTAATTAAAGAACTAGATTTATTTAAAGGATTACCGAAAACTAAACACAAATCTTTAGAAGAAGTATTGGAATTTATTGT
TGCAACAAGAATAATTCAACCAAGAAGTTATATTTGTCAATACAAAAACAAAAATGACTTTTTACATAAGATAGATATAAAAAAATCTTCAATTTATAAC
TATTTCGATACTTTTTTAGAATATAAAAATGCAATTTTAGTCAATATTTATAACAAAATGCAAGAATTGACAACTAGAAACGCAAAATTAATGCATTTTC
ATAATACAACTGTTTATTTTCAAAGTTTTTCAAGAGATGGTTTGAAACAAAGAGGTTTTTCTAAAGATGGAAAGCATGATGAATATCAAATTGTTGTGGC
TATGGCAGTTGATAATAATGGTATTCCTTTTCACTATAAAGTTTTAAAAGGAAATACTGCAGATTCTAAAACTCTTGTGAAATTTTTAATCGAAATGCAA
AGAATTTACAAAACAAAAGACATAATAATTGTTGCTGATAAAGGTATTATTCAAAATGCAAATTTAAGATATTTAGAACAAAAAGGATATAAATATATAC
TTCAGAAACGTATTGATATTCTTGGAAAAGAAGATAAAGCATTTATAGTAAATGAACAAGGCTTTGTTCAAGAAAATGAGTATTTTACTAAATCTAGATT
CGTCGAATCTATTTGAGCTAAAAACAAAAATAAAAAAAGAGATAGCGATACCTTTAGAAAACAATTTGTCTATTTTAGCCCTTCAAAACAAACTTTAGAC
AAAATAAAAAGACAAAATCTTATTAATAAATTGGAGAAAAAGTCTATTAACGGTGAATTGCCATTAAGTGCTTTGGTTGCTGAATATAAGAAAAAGTATA
TGGATGTAGATGGTAAAACAGTCGCAAGATTAAATATTAAAAAAATTAAAAAAGTGGCTAATGAAAATGGCTTTTATATGATTGAAACGAACATAACAAA
TTTAAATTCAAAAGAAGCCAATGAAATATATAATAGACAATGAAAAGTGGAAGAAAGTTTCAGAACCTTAAAATCAGCAATCGAAGTTAGACCGATGTAC
GTTTATAAAGACAAGCATATTCAATCTCATATATTTTTATGCTTTTTGTCTCTAATTGTTTTGAAATATTGCATTTATAAATTAAAGAAATTTTATAAAG
ATAATGGAGATATCCAAAAACTCACAATGAATATGTTTATAGATGCATTGAAACTTATAACAATCACAACAAAAACTGTGAATGGTAAAGTTGTAAGTGA
AATCAAGAATAATTTAGATCCAGAACATAAGGAATTAAACAAAATATATAGTGATTTTCAATATGCGGTTGATGGTCTATCATTGTAATTTAAAAGCGCA
AAAAACGAATACGCCTTATTTATAGGTGTATTCGTTTTTTTCTTCATTACAACTTGAAAACGCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1689 bp562 aa1001788+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MITMIIMYNINMSNYILYKRKNPKGIYIALGISKGYGKGIGNLVGLGYWEEIKEKYSLQNIDDLKQIARLVPVGEDKIEVKTKFFQLLNPTSVETNIKNV
GIELIYKVIKELDLFKGLPKTKHKSLEEVLEFIVATRIIQPRSYICQYKNKNDFLHKIDIKKSSIYNYFDTFLEYKNAILVNIYNKMQELTTRNAKLMHF
HNTTVYFQSFSRDGLKQRGFSKDGKHDEYQIVVAMAVDNNGIPFHYKVLKGNTADSKTLVKFLIEMQRIYKTKDIIIVADKGIIQNANLRYLEQKGYKYI
LQKRIDILGKEDKAFIVNEQGFVQENEYFTKSRFVESIWAKNKNKKRDSDTFRKQFVYFSPSKQTLDKIKRQNLINKLEKKSINGELPLSALVAEYKKKY
MDVDGKTVARLNIKKIKKVANENGFYMIETNITNLNSKEANEIYNRQWKVEESFRTLKSAIEVRPMYVYKDKHIQSHIFLCFLSLIVLKYCIYKLKKFYK
DNGDIQKLTMNMFIDALKLITITTKTVNGKVVSEIKNNLDPEHKELNKIYSDFQYAVDGLSL

 

Blast result :
Comments
ISMsy1 is 59% aa similar to ISMhp1.
References
1] Slavec, B. (2005) Direct submission.
2] Vasconcelos,A.T., Ferreira,H.B., Bizarro,C.V., Bonatto,S.L., Carvalho,M.O., Pinto,P.M., Almeida,D.F., Almeida,L.G., Almeida,R., Alves-Filho,L., Assuncao,E.N., Azevedo,V.A., Bogo,M.R., Brigido,M.M., Brocchi,M., Burity,H.A., Camargo,A.A., Camargo,S.S., Carepo,M.S., Carraro,D.M., de Mattos Cascardo,J.C., Castro,L.A., Cavalcanti,G., Chemale,G., Collevatti,R.G., Cunha,C.W., Dallagiovanna,B., Dambros,B.P., Dellagostin,O.A., Falcao,C., Fantinatti-Garboggini,F., Felipe,M.S., Fiorentin,L., Franco,G.R., Freitas,N.S., Frias,D., Grangeiro,T.B., Grisard,E.C., Guimaraes,C.T., Hungria,M., Jardim,S.N., Krieger,M.A., Laurino,J.P., Lima,L.F., Lopes,M.I., Loreto,E.L., Madeira,H.M., Manfio,G.P., Maranhao,A.Q., Martinkovics,C.T., Medeiros,S.R., Moreira,M.A., Neiva,M., Ramalho-Neto,C.E., Nicolas,M.F., Oliveira,S.C., Paixao,R.F., Pedrosa,F.O., Pena,S.D., Pereira,M., Pereira-Ferrari,L., Piffer,I., Pinto,L.S., Potrich,D.P., Salim,A.C., Santos,F.R., Schmitt,R., Schneider,M.P., Schrank,A., Schrank,I.S., Schuck,A.F., Seuanez,H.N., Silva,D.W., Silva,R., Silva,S.C., Soares,C.M., Souza,K.R., Souza,R.C., Staats,C.C., Steffens,M.B., Teixeira,S.M., Urmenyi,T.P., Vainstein,M.H., Zuccherato,L.W., Simpson,A.J. and Zaha,A. (2005) J. Bacteriol. 187 (16), 5568-5577