ISMno35
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011892 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 plasmid pMNOD01 |
DNA section
IS Length : 894 bp
Ends
IR Length : 19/22
IRL : GGGCGTGTCGCAAACGCGGATGGGCCCATGTTCACGGGTTGTTAGCCATA
IRR : GGGCTTGTCGCAAACTCGGGTGCGAGCCGCAGAAGGGGCTGTCCGTCCCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGGTGGACGTAGA | CTTCCGGTTGCCTTT | 0 |
DNA sequence
GGGCGTGTCGCAAACGCGGATGGGCCCATGTTCACGGGTTGTTAGCCATAGCCGCCCAGCTTGCCGCTCCGCCCTCGGAGCCGGCCCATGATCCTGAATG
CCCTCGCCCTCACGCTGAAGCGCCAGGCCCGCGGCGACTTCCGGGGCCGGCATGTCGAGGCCACGCTGATCGTGCAGGCCGTCTCCTGGTCCCTGCGCGA
CGCGCTCAGCGACCGCGACATCGAGGAGATGCTCCTGGAGAGGGGCCTGCAGGTGGACCACTCCACCCTCAACCGGTGGGTCCTCGCCTATGCACCCGCC
CTCGAGCGTCGGCTGCGCCGGTTCCGCAAGCCGCCCTGCGGATCCGGGCGCGTCGACGAGACCTCTATCCGCGTCCGCGGCCAGTGGCGCTCCCTCGACC
GGGCCATCGACAAGCCCGGCGAAGCGGTCGACGTCCTGCTCACGGCCAACCGCGATCTCGATGCCGCCCAGCGCGTCTTCCGCACGATGCTGCAGGATCA
GCCGTTGCTCGCTCCAGACCGGATCGGCACCGATGGGGCCGGCCCGCACCCGCCAGCCATCGCCAAGAGCCGCAAGGAGGGCCTGCTGCCTCGCACGCCC
ACCCACCACGTCACCAAGCCCCTGCAGCAAGGGATCGCGAGCGACCACGTCCGGGTGAAGCGGCCGATGCCGCGGGGGGGCGGGTTCCGCTCCTTCACCA
CGGCCCGGCGGACGATCCAGGGCGTCAAAGCCATGCTGTGGCGGCGCAAGGGCTTCGGGTTTGCGGGGGCCTGGACCGTGCGGGAGCAGAACCAGCTGCT
CGCGCACTGCTTCGGACTTCCCGTCGCGAACAAAGCATGAAAGCGGGGACGGACAGCCCCTTCTGCGGCTCGCACCCGAGTTTGCGACAAGCCC
CCCTCGCCCTCACGCTGAAGCGCCAGGCCCGCGGCGACTTCCGGGGCCGGCATGTCGAGGCCACGCTGATCGTGCAGGCCGTCTCCTGGTCCCTGCGCGA
CGCGCTCAGCGACCGCGACATCGAGGAGATGCTCCTGGAGAGGGGCCTGCAGGTGGACCACTCCACCCTCAACCGGTGGGTCCTCGCCTATGCACCCGCC
CTCGAGCGTCGGCTGCGCCGGTTCCGCAAGCCGCCCTGCGGATCCGGGCGCGTCGACGAGACCTCTATCCGCGTCCGCGGCCAGTGGCGCTCCCTCGACC
GGGCCATCGACAAGCCCGGCGAAGCGGTCGACGTCCTGCTCACGGCCAACCGCGATCTCGATGCCGCCCAGCGCGTCTTCCGCACGATGCTGCAGGATCA
GCCGTTGCTCGCTCCAGACCGGATCGGCACCGATGGGGCCGGCCCGCACCCGCCAGCCATCGCCAAGAGCCGCAAGGAGGGCCTGCTGCCTCGCACGCCC
ACCCACCACGTCACCAAGCCCCTGCAGCAAGGGATCGCGAGCGACCACGTCCGGGTGAAGCGGCCGATGCCGCGGGGGGGCGGGTTCCGCTCCTTCACCA
CGGCCCGGCGGACGATCCAGGGCGTCAAAGCCATGCTGTGGCGGCGCAAGGGCTTCGGGTTTGCGGGGGCCTGGACCGTGCGGGAGCAGAACCAGCTGCT
CGCGCACTGCTTCGGACTTCCCGTCGCGAACAAAGCATGAAAGCGGGGACGGACAGCCCCTTCTGCGGCTCGCACCCGAGTTTGCGACAAGCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 753 bp | 250 aa | 88 | 840 | + | No |
Chemistry : DDE
ORF sequence :
MILNALALTLKRQARGDFRGRHVEATLIVQAVSWSLRDALSDRDIEEMLLERGLQVDHSTLNRWVLAYAPALERRLRRFRKPPCGSGRVDETSIRVRGQW
RSLDRAIDKPGEAVDVLLTANRDLDAAQRVFRTMLQDQPLLAPDRIGTDGAGPHPPAIAKSRKEGLLPRTPTHHVTKPLQQGIASDHVRVKRPMPRGGGF
RSFTTARRTIQGVKAMLWRRKGFGFAGAWTVREQNQLLAHCFGLPVANKA
RSLDRAIDKPGEAVDVLLTANRDLDAAQRVFRTMLQDQPLLAPDRIGTDGAGPHPPAIAKSRKEGLLPRTPTHHVTKPLQQGIASDHVRVKRPMPRGGGF
RSFTTARRTIQGVKAMLWRRKGFGFAGAWTVREQNQLLAHCFGLPVANKA
Blast result :
Comments
ISMno35 is 90% aa similar to ISMno28.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission Genbank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission Genbank.