ISMno10
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011887 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 Methylobacterium nodulans ORS 2060 plasmid pMNOD02 Methylobacterium nodulans ORS 2060 plasmid pMNOD01 |
DNA section
IS Length : 1749 bp
Ends
IR Length : 17/18
IRL : GACACTGTTGGCGAATTCCGGGGGGTGCTGGGTGTAGGCTGACCGTCCCG
IRR : GATACTGTTGGCGAATTCGGCCGCTATGCAGCGAGAGCCTCGAAGCGTGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACGTGTCCAGAAAA | CGACCG | GATACTGCTGCGGA | 6 |
| GGAATTGCCGGTTT | CGACCG | TTTTCCAGACATTT | 6 |
| CGCTGTCAGGAAAA | CGGCCG | TTTTCTTTACATTG | 6 |
| TACTGTCAGGAAAA | CGGTCG | TTTTCCTCACAGCA | 6 |
| GCATGTCCAGAAAA | CGACCG | GATGCTGTTGGCGA | 6 |
DNA sequence
GACACTGTTGGCGAATTCCGGGGGGTGCTGGGTGTAGGCTGACCGTCCCGCTCGGAGGTCGCTCATGTCGCTCCGGCCGCACCACCCACTCCCACCGGTC
CCTGAGGACACCGCCCGGGTGGCCCAAACCGCGTTCCGGCGCGGCAACCCCTACCTGCTCCTGCGCACGCGGCTCGGCACAATCTTCGCTGATGCCGCGT
TCGCCGACCTCTATCCCGCACGCGGCCAGCCCGCCTACGCGCCCTGGCGCTTGGCCCTGGTCACGCTCTTGCAGTTTCGGGAGAGCATGAGCGATCGCCA
AGCCGCCGAGGCGGTCCGGGCGCGGATTGACTGGAAGTACCTGCTGGGACTTGATCTGGCCGATCCCGGCTTCGACTACAGCGTCCTGTGCGAGTTCCGC
GGTCGGCTGCTGCAGCACGAGGCCACCGGGCGGCTGCTGGCCCGCATCCTCGATGCCGCGCGCGACCAGGGCGTGCTCAAGGCGCGCGGGCGCCAGCGCA
CCGACAGCACCCACGTGCTCGCCGCGGTGCGCGACCTCAACCGGGTCGAGCTGTTGGCCGAGACGCTGCGGGCGGCTCTCAACGCGGTCGCGGCCCTCGC
CCCCGACTGGCTGCGCCGTGTCGCCCCGCCCGACTGGCACGAGCGCTACGATCGCCGCATCGAGGATGCGCGACTGCCGGAGACCGGCCCCAAGCGCGAG
GCCTACGTGCTGCAGGTCGGGGCGGACGGCTACCGCCTGCTCGACGCGCTGGATGGCGCGAGCGCGCCGCCACTCGCTGTCGCCTTGCCTGCCGTGGCCG
TGCTGCGCCGGGTATGGGCGCGGCACTTCGAGCGCGCAGGGGACGGAAGTCCACCCGCCGGCACCAGCGTCCGGCTGCGCCCGGTGCAGGGACGCGGGCC
CGGCGACCGGGTCGAGTCGCCCTACGACGTCGAGGCGCGGTTCCGGGCCAAGTCTGGAACGGAGTGGACCGGCTACATGGTCCACCTGACCGAGACCTGC
GACCCCGACCTGCCTCGGTTGGTCGTTCACGCCGACACCACTCCGGCCAATGTGCATGAGGCGATGCGCACCGGCGTGATCCATGCCGCCCTGGCGGGCC
TGGATCTGATCCCCTCCGAGCACCTGGTCGACGCGGCCTATATCAGCGCCGAGCATCTGGTCGCGGCGCACGAGCGGCACGGCATCGCCCTGATCGGCCC
CGCGCGGTCGAACCAGAGTTGGCAGACGCGTGAGGAGGGGGCGTTCCACGTCACGGACTTCGCGGTCGACTGGGAGCGCTGTCGCGTGTGCTGCCCCGAG
GGCCGCGAGAGTACGAGTTGGGGCACGTACAGGGACAAGGTGAGCGGACGCGCGTTCATACGCGCAGGCTTCAGCCCCGCCGTCTGCCGCGTGTGTCCAG
CCAAGCCGCGGTGCACCCGGGCGGGGAGCCGCCGGCTCAGCCTGCATCCGCGTGCGGAGCACGAGGCGCTGGCGGCCGCGCGGATGCGGCAGGAGAGCGA
GGAGGGCCGGCAGCTCTACGGGCAGCGACAAGGCATTGAGGCGACGATCGCGCAGGGCGTGCGGAGCTTCGGCTTGCGCCGAGCGCGCTATCGCGGACTG
GCGAAGATGACCCTGCAGAGCGTGGCGACGGCGGCCGCTCTCAATCTTGATCGTCTCGCCGCTTGGTTCTCGCACCGCCCGCTGGCCCCCACGCGCACCT
CACGCTTCGAGGCTCTCGCTGCATAGCGGCCGAATTCGCCAACAGTATC
CCTGAGGACACCGCCCGGGTGGCCCAAACCGCGTTCCGGCGCGGCAACCCCTACCTGCTCCTGCGCACGCGGCTCGGCACAATCTTCGCTGATGCCGCGT
TCGCCGACCTCTATCCCGCACGCGGCCAGCCCGCCTACGCGCCCTGGCGCTTGGCCCTGGTCACGCTCTTGCAGTTTCGGGAGAGCATGAGCGATCGCCA
AGCCGCCGAGGCGGTCCGGGCGCGGATTGACTGGAAGTACCTGCTGGGACTTGATCTGGCCGATCCCGGCTTCGACTACAGCGTCCTGTGCGAGTTCCGC
GGTCGGCTGCTGCAGCACGAGGCCACCGGGCGGCTGCTGGCCCGCATCCTCGATGCCGCGCGCGACCAGGGCGTGCTCAAGGCGCGCGGGCGCCAGCGCA
CCGACAGCACCCACGTGCTCGCCGCGGTGCGCGACCTCAACCGGGTCGAGCTGTTGGCCGAGACGCTGCGGGCGGCTCTCAACGCGGTCGCGGCCCTCGC
CCCCGACTGGCTGCGCCGTGTCGCCCCGCCCGACTGGCACGAGCGCTACGATCGCCGCATCGAGGATGCGCGACTGCCGGAGACCGGCCCCAAGCGCGAG
GCCTACGTGCTGCAGGTCGGGGCGGACGGCTACCGCCTGCTCGACGCGCTGGATGGCGCGAGCGCGCCGCCACTCGCTGTCGCCTTGCCTGCCGTGGCCG
TGCTGCGCCGGGTATGGGCGCGGCACTTCGAGCGCGCAGGGGACGGAAGTCCACCCGCCGGCACCAGCGTCCGGCTGCGCCCGGTGCAGGGACGCGGGCC
CGGCGACCGGGTCGAGTCGCCCTACGACGTCGAGGCGCGGTTCCGGGCCAAGTCTGGAACGGAGTGGACCGGCTACATGGTCCACCTGACCGAGACCTGC
GACCCCGACCTGCCTCGGTTGGTCGTTCACGCCGACACCACTCCGGCCAATGTGCATGAGGCGATGCGCACCGGCGTGATCCATGCCGCCCTGGCGGGCC
TGGATCTGATCCCCTCCGAGCACCTGGTCGACGCGGCCTATATCAGCGCCGAGCATCTGGTCGCGGCGCACGAGCGGCACGGCATCGCCCTGATCGGCCC
CGCGCGGTCGAACCAGAGTTGGCAGACGCGTGAGGAGGGGGCGTTCCACGTCACGGACTTCGCGGTCGACTGGGAGCGCTGTCGCGTGTGCTGCCCCGAG
GGCCGCGAGAGTACGAGTTGGGGCACGTACAGGGACAAGGTGAGCGGACGCGCGTTCATACGCGCAGGCTTCAGCCCCGCCGTCTGCCGCGTGTGTCCAG
CCAAGCCGCGGTGCACCCGGGCGGGGAGCCGCCGGCTCAGCCTGCATCCGCGTGCGGAGCACGAGGCGCTGGCGGCCGCGCGGATGCGGCAGGAGAGCGA
GGAGGGCCGGCAGCTCTACGGGCAGCGACAAGGCATTGAGGCGACGATCGCGCAGGGCGTGCGGAGCTTCGGCTTGCGCCGAGCGCGCTATCGCGGACTG
GCGAAGATGACCCTGCAGAGCGTGGCGACGGCGGCCGCTCTCAATCTTGATCGTCTCGCCGCTTGGTTCTCGCACCGCCCGCTGGCCCCCACGCGCACCT
CACGCTTCGAGGCTCTCGCTGCATAGCGGCCGAATTCGCCAACAGTATC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1662 bp | 553 aa | 65 | 1726 | + | No |
Chemistry : DDE
ORF sequence :
MSLRPHHPLPPVPEDTARVAQTAFRRGNPYLLLRTRLGTIFADAAFADLYPARGQPAYAPWRLALVTLLQFRESMSDRQAAEAVRARIDWKYLLGLDLAD
PGFDYSVLCEFRGRLLQHEATGRLLARILDAARDQGVLKARGRQRTDSTHVLAAVRDLNRVELLAETLRAALNAVAALAPDWLRRVAPPDWHERYDRRIE
DARLPETGPKREAYVLQVGADGYRLLDALDGASAPPLAVALPAVAVLRRVWARHFERAGDGSPPAGTSVRLRPVQGRGPGDRVESPYDVEARFRAKSGTE
WTGYMVHLTETCDPDLPRLVVHADTTPANVHEAMRTGVIHAALAGLDLIPSEHLVDAAYISAEHLVAAHERHGIALIGPARSNQSWQTREEGAFHVTDFA
VDWERCRVCCPEGRESTSWGTYRDKVSGRAFIRAGFSPAVCRVCPAKPRCTRAGSRRLSLHPRAEHEALAAARMRQESEEGRQLYGQRQGIEATIAQGVR
SFGLRRARYRGLAKMTLQSVATAAALNLDRLAAWFSHRPLAPTRTSRFEALAA
PGFDYSVLCEFRGRLLQHEATGRLLARILDAARDQGVLKARGRQRTDSTHVLAAVRDLNRVELLAETLRAALNAVAALAPDWLRRVAPPDWHERYDRRIE
DARLPETGPKREAYVLQVGADGYRLLDALDGASAPPLAVALPAVAVLRRVWARHFERAGDGSPPAGTSVRLRPVQGRGPGDRVESPYDVEARFRAKSGTE
WTGYMVHLTETCDPDLPRLVVHADTTPANVHEAMRTGVIHAALAGLDLIPSEHLVDAAYISAEHLVAAHERHGIALIGPARSNQSWQTREEGAFHVTDFA
VDWERCRVCCPEGRESTSWGTYRDKVSGRAFIRAGFSPAVCRVCPAKPRCTRAGSRRLSLHPRAEHEALAAARMRQESEEGRQLYGQRQGIEATIAQGVR
SFGLRRARYRGLAKMTLQSVATAAALNLDRLAAWFSHRPLAPTRTSRFEALAA
Blast result :
Comments
ISMno10 is 62% aa similar to ISAcma45.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.