ISMtsp19

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010511 ND Methylobacterium sp.
Methylobacterium sp. 4-46
DNA section
IS Length : 1486 bp

Ends


IR Length : 21/22

IRL : TAGCATTACAGTTGCGTTTTCGGCGAGGTTCTGACTCTTTGCGTCGCCAT
IRR : TAGCATTACAGTTGCGTTTTTGTGCGTGCTGGCTGACGGCTGGCCCGGCT

Insertion site


Left flankDirect repeatRight flankDR Length
AAACCAAGTCACCGGGGCAT0

DNA sequence

TAGCATTACAGTTGCGTTTTCGGCGAGGTTCTGACTCTTTGCGTCGCCATGATTCGCGCATCATGGACGTCGGAGACTTCGGTCAAGGCGACGCTGGAGT
TGTGGGCCTCGTCGCTCCGGGAGGTGAAGGGGCGCATGCGGCCTCTGTTCACCCAGCGCCGGGTCGCCGCCTCGGCCGGAGCGTTCTTGGATGGACTGCT
CGGTGCAGAGCGGCGCAAGACGGGTTGGATGCGGGCGGAAGCCGCGGGCGATCCCGGGCCCTGGCGCCAGCAGGCGGTGCTTGGGCGCGGACGTTGGGAC
GCCGACGCTCTGCGCGACGTGGTGCGTGACTATGCTCTGGAGACGCTGGCCGACCCGGACGCGGTTCTGGTTCTCGACGAGACCGGCTTTCTGAAGCAGG
GCAAGGCCTCGTGCGGAGTGCATCGCCAGTACACCGGCTCAGCCGGCAAGATCACGAACTGTCAGATCGGCGTGTTCGCGGCCTATGTCTCACGGCACGG
TCATGCCTTCATCGATCGAGCCTTGTACCTACCCCAGACCTGGACCTCGGATCCAGCCCGGCTGGCCGCCGCCCACGCGCCGAAGGGGACGACCTTCGCG
ACCAAGCCGGGATTGGCTCTGGCGATGATCGAGCGGGCGAGGGCTGCCGGCGTGCCGTTTTCCTGGGTAGCGGCCGACACCGTCTACGGGGTCGGCGAGA
TCGAGATGGCCCTGCGGCGGGCGGGCAAGGGTTACGTGCTCGGGGTGAAGAGCGATCACGCGTTCAACTCCTGGGCCGGCAAGCCGCTGGTGGCCGGCAC
CGCCGAGACGATCGCGGATGGCCTTGCTCCGTCGGCCTGGACGCGCCTGTCGGCGGGCGACGGGACGAGGGGCGCGAGGCTGTACGACTGGGCCTACTGC
GAACTGGCCGACCTCGCTGGTGCCGCCTACGACCAGACCGGCCTGTGGACGCGGGGGCTCCTGATCCGCCGCAGCCTGAGCGATGGCGAGCGGGCCTACT
TCACGACCTGGTGCCCGGCCGGCACGCCGATCCAGATCCTGGTCAGCGTCGAGGGACGGCGTTGGAGCATCGAGGACGCGTTCGAGACGGCCAAGACCGA
CCTCGGGCTGACACACAATGAGACCCGCTCTTGGCACGGCTGGCATCGGCACGTCAGCCTGGTGATGATGGCCTTCGCCCTGCTGACGGTGATCCGCCAT
CACGCCAACGCGCCGCCCCCAAAAAGCCGAGCCCGGCCGAGACCGCGCGCCCGCTGATCCGCTGGTCGGTCCAGGAGATCCGCCGCATCGCGGTGCGGAT
GGCACAGCGGCGCATTCAACCCGCTCACGTCATCGCATGGTCGCTCTGGCGACGGGCGCATCAGGCGGCCGCCCGCCAGGCACATCTCAAACAGCGCGCG
TCAGACGCCAAATGGCGGCGGCAGCGCCGGACGCCAAGCCGGGCCAGCCGTCAGCCAGCACGCACAAAAACGCAACTGTAATGCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa491257+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIRASWTSETSVKATLELWASSLREVKGRMRPLFTQRRVAASAGAFLDGLLGAERRKTGWMRAEAAGDPGPWRQQAVLGRGRWDADALRDVVRDYALETL
ADPDAVLVLDETGFLKQGKASCGVHRQYTGSAGKITNCQIGVFAAYVSRHGHAFIDRALYLPQTWTSDPARLAAAHAPKGTTFATKPGLALAMIERARAA
GVPFSWVAADTVYGVGEIEMALRRAGKGYVLGVKSDHAFNSWAGKPLVAGTAETIADGLAPSAWTRLSAGDGTRGARLYDWAYCELADLAGAAYDQTGLW
TRGLLIRRSLSDGERAYFTTWCPAGTPIQILVSVEGRRWSIEDAFETAKTDLGLTHNETRSWHGWHRHVSLVMMAFALLTVIRHHANAPPPKSRARPRPR
AR

 

Blast result :
Comments
ISMtsp19 is 84% aa similar to ISRm31.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.