ISMno9
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011887 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 Methylobacterium nodulans ORS 2060 plasmid pMNOD02 |
DNA section
IS Length : 1548 bp
Ends
IR Length : 16/18
IRL : GATTCTGTTGAAAAACTCCGCTGTTGCGGCGGTAGTCGCGGGGTGATTCA
IRR : GATTTCGTTGAAAAACTCGCGGGCGATCTGGATCGAGCACCGATCGGCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGCCGCTTCG | CGCC | ACTTCCGGAC | 4 |
| GTCCGCTGTC | GGCGA | CGAAGCAGAC | 5 |
| GTCAGCAATG | CGCC | AGATTCGGTC | 4 |
| GTCCGCTCAG | GGCG | CGAAGCGTCC | 4 |
| GTCCGCTCAG | GGCG | CATGCCGGCC | 4 |
| GTCGGCTTGT | GGCG | CGAAGCGGCC | 4 |
| TCCCGCAAAG | CGCC | AGGAGCCGAC | 4 |
DNA sequence
GATTCTGTTGAAAAACTCCGCTGTTGCGGCGGTAGTCGCGGGGTGATTCACTCCTGTCGAAAGACGGAGATCGAAGCAGATGATGGGACCTCGGCAAGTC
GAGCAGGGCGCCCTGTTTTACGAGTTCTCGCTCGATACCCACGTACCCGCCGACCATCTCCTGCGCGCCATCGACCGCTTCGTCGACCTGTCGGGCCTAC
GCGCGCACCTGCGTCCCTTCTACAGCACCACGGGTCGGCCTTCGGTCGATCCCGAGCTGATGGTTCGCATGCTGCTCGTCGGCTACTGCTTCGGCATCCG
CTCCGAGCGCCGTCTGTGCGAGGAGGTGCATCTCAACCTCGCCTACCGCTGGTTCTGCCGGCTCGGGTTGGATGGCGCGGTGCCCGACCACTCGACCTTC
TCCAAGAACCGACACGGTCGTTTCCGTGACAGCGACCTGCTGCGCGAGGTGTTCGAGACCACCGTGCAGCGCTGCATCGAGGAGGGGCTGGTCGGTGGCG
AGGGCTTCGCGGTCGATGCCAGCCTGATCCGGGCCGATGCCAACAAGCAGCGCTCCGCAGACGCCTCCGAGGCCGTCGACTGGAACGATCTCGCCCGGAT
CCGCCGGTCGGTGCGCGAGTACCTCGACACCCTCGACGAAGCCGCCTGGGGAGCAGCGAGCGAGGTCCAGCCGAAGTTCGTCTCCCGCTCCGACCCGGCG
GCGCAGTGGACGGGCGCGCTGAAGGGCCATGCCTTCTTCGCCTACGCCACCAACTACCTGATCGACCTCGACCACGCCGTGATCGTCGATGTCGAGGCCA
GCCGCGCCATCCGGCAGGCGGAGGTCGGGGCAGCCCGCACCATGATCGCGCGCGCGCAGGACCGCTTCGGGCTGTGGCCGGCCCGGCTTGCGGCCGACAG
TGCCTACGGGTCGGCCGAGCAGCTCGCTTGGCTCGTGCACGAGCGCGGGATCGAGCCGCACATCCCCGTCTTCGACAAGTCCGAGCGCCGCGATGGCACC
TTCAGCCGGTCAGCCTTCACCTACGACCCTGCAGCCGATGCCTACACCTGCCCGGCCGGCCACCCATTGCGGCCACGCCAGAAGGTCTATCGGACGCCGT
TCCCGCTCGTCGACGACGATGGCATGATGCGCTACCGGGCCAGCAAGCGCGACTGCGACGCCTGCGCGCTGAAGCCACGATGCTGCCCCACCACACCCGC
CCGCAAGATCCCGCGCTCGATCCACGAAGGCGCCCGGCAGATGGCGCGCGACATCTGCGCCTCGGAGGAGGGCCGCACCTCGCGGCGCGAGCGCAAGAAG
GTCGAGATGTTGTTCGCCCACCTCAAGCGAATCCTGAAGCTGGATCGGCTGCGGCTGCGGGGTCCGAACGGGGCCCGGGACGAGTTCCACCTCGCCGCAG
CGGCCCAGAACCTCAGGAAGCTCGCCCAGCTGATCCCGCTACAGCAGCTGAGCCCGGCCTGATCGGCCGGGATCCCCCTCATGTTGGATCGGCTCGCTCA
GCCGATCGGTGCTCGATCCAGATCGCCCGCGAGTTTTTCAACGAAATC
GAGCAGGGCGCCCTGTTTTACGAGTTCTCGCTCGATACCCACGTACCCGCCGACCATCTCCTGCGCGCCATCGACCGCTTCGTCGACCTGTCGGGCCTAC
GCGCGCACCTGCGTCCCTTCTACAGCACCACGGGTCGGCCTTCGGTCGATCCCGAGCTGATGGTTCGCATGCTGCTCGTCGGCTACTGCTTCGGCATCCG
CTCCGAGCGCCGTCTGTGCGAGGAGGTGCATCTCAACCTCGCCTACCGCTGGTTCTGCCGGCTCGGGTTGGATGGCGCGGTGCCCGACCACTCGACCTTC
TCCAAGAACCGACACGGTCGTTTCCGTGACAGCGACCTGCTGCGCGAGGTGTTCGAGACCACCGTGCAGCGCTGCATCGAGGAGGGGCTGGTCGGTGGCG
AGGGCTTCGCGGTCGATGCCAGCCTGATCCGGGCCGATGCCAACAAGCAGCGCTCCGCAGACGCCTCCGAGGCCGTCGACTGGAACGATCTCGCCCGGAT
CCGCCGGTCGGTGCGCGAGTACCTCGACACCCTCGACGAAGCCGCCTGGGGAGCAGCGAGCGAGGTCCAGCCGAAGTTCGTCTCCCGCTCCGACCCGGCG
GCGCAGTGGACGGGCGCGCTGAAGGGCCATGCCTTCTTCGCCTACGCCACCAACTACCTGATCGACCTCGACCACGCCGTGATCGTCGATGTCGAGGCCA
GCCGCGCCATCCGGCAGGCGGAGGTCGGGGCAGCCCGCACCATGATCGCGCGCGCGCAGGACCGCTTCGGGCTGTGGCCGGCCCGGCTTGCGGCCGACAG
TGCCTACGGGTCGGCCGAGCAGCTCGCTTGGCTCGTGCACGAGCGCGGGATCGAGCCGCACATCCCCGTCTTCGACAAGTCCGAGCGCCGCGATGGCACC
TTCAGCCGGTCAGCCTTCACCTACGACCCTGCAGCCGATGCCTACACCTGCCCGGCCGGCCACCCATTGCGGCCACGCCAGAAGGTCTATCGGACGCCGT
TCCCGCTCGTCGACGACGATGGCATGATGCGCTACCGGGCCAGCAAGCGCGACTGCGACGCCTGCGCGCTGAAGCCACGATGCTGCCCCACCACACCCGC
CCGCAAGATCCCGCGCTCGATCCACGAAGGCGCCCGGCAGATGGCGCGCGACATCTGCGCCTCGGAGGAGGGCCGCACCTCGCGGCGCGAGCGCAAGAAG
GTCGAGATGTTGTTCGCCCACCTCAAGCGAATCCTGAAGCTGGATCGGCTGCGGCTGCGGGGTCCGAACGGGGCCCGGGACGAGTTCCACCTCGCCGCAG
CGGCCCAGAACCTCAGGAAGCTCGCCCAGCTGATCCCGCTACAGCAGCTGAGCCCGGCCTGATCGGCCGGGATCCCCCTCATGTTGGATCGGCTCGCTCA
GCCGATCGGTGCTCGATCCAGATCGCCCGCGAGTTTTTCAACGAAATC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1383 bp | 460 aa | 80 | 1462 | + | No |
Chemistry : DDE
ORF sequence :
MMGPRQVEQGALFYEFSLDTHVPADHLLRAIDRFVDLSGLRAHLRPFYSTTGRPSVDPELMVRMLLVGYCFGIRSERRLCEEVHLNLAYRWFCRLGLDGA
VPDHSTFSKNRHGRFRDSDLLREVFETTVQRCIEEGLVGGEGFAVDASLIRADANKQRSADASEAVDWNDLARIRRSVREYLDTLDEAAWGAASEVQPKF
VSRSDPAAQWTGALKGHAFFAYATNYLIDLDHAVIVDVEASRAIRQAEVGAARTMIARAQDRFGLWPARLAADSAYGSAEQLAWLVHERGIEPHIPVFDK
SERRDGTFSRSAFTYDPAADAYTCPAGHPLRPRQKVYRTPFPLVDDDGMMRYRASKRDCDACALKPRCCPTTPARKIPRSIHEGARQMARDICASEEGRT
SRRERKKVEMLFAHLKRILKLDRLRLRGPNGARDEFHLAAAAQNLRKLAQLIPLQQLSPA
VPDHSTFSKNRHGRFRDSDLLREVFETTVQRCIEEGLVGGEGFAVDASLIRADANKQRSADASEAVDWNDLARIRRSVREYLDTLDEAAWGAASEVQPKF
VSRSDPAAQWTGALKGHAFFAYATNYLIDLDHAVIVDVEASRAIRQAEVGAARTMIARAQDRFGLWPARLAADSAYGSAEQLAWLVHERGIEPHIPVFDK
SERRDGTFSRSAFTYDPAADAYTCPAGHPLRPRQKVYRTPFPLVDDDGMMRYRASKRDCDACALKPRCCPTTPARKIPRSIHEGARQMARDICASEEGRT
SRRERKKVEMLFAHLKRILKLDRLRLRGPNGARDEFHLAAAAQNLRKLAQLIPLQQLSPA
Blast result :
Comments
ISMno9 is 80% aa similar to ISShsp2.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.