ISMno7
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011887 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 Methylobacterium nodulans ORS 2060 plasmid pMNOD02 Methylobacterium nodulans ORS 2060 plasmid pMNOD01 |
DNA section
IS Length : 1147 bp
Ends
Left end : GCCTTGTATCTCTGAGTTGCCCGCTGGAGCGATGCCAGCGAGGCTACAAGGTGAGGGTCAGCCCGCGTTCGCCTTGGGCTTGCAAGCCCGCGACAGAGCA
Right end : CCGTAATGCGAAAGCTCCTGGTGACGCTCAACGCCATCGTCCGCGAACGCACGCCCTGGCGGCCACTCGCCGCTTGACCTTCAACACAGCCGCTCCGTCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGTTCCTATC | CGTCCTCCGT | 0 | |
| CCGGATTCTC | CGCTCCCTCT | 0 | |
| ATTACGCGCA | CGCGGCCCCT | 0 | |
| CCGGATTCTC | CGCTCCCTCT | 0 | |
| CGAGCGGTGA | GTGGCGCTGC | 0 |
DNA sequence
GCCTTGTATCTCTGAGTTGCCCGCTGGAGCGATGCCAGCGAGGCTACAAGGTGAGGGTCAGCCCGCGTTCGCCTTGGGCTTGCAAGCCCGCGACAGAGCA
TGGTGCGGCCCTCACCTTCACAGTCCCGAACCCGGACAGCCGCTCGGGCCCGAGCCCGCATTTGCAAGGTAGGGTCATGGACGAACACCGCACCATCTTC
GTCGGCATCGACGTATCCAAGGACCGCCTCGACGTTCATCTGAGACCCTCGGACGAGGCGTTGCATGTCCCACGGGACGCGAAAGGGCTGGATACCCTCG
CTCGCCGTCTTGGCCGCCTCCCTGTCGCTCTCGTCGTCCTTGAAGCCACAGGCGGCTTCGAGGCGAGCGTGGCTGCAGCGTTGGCAGCGGTCGGGCTGCC
GCTCTGCATCGTCAACCCACGCCAGATCCGCGATTTCGCCAGAGCCATGGGTCGTCTGGCGAAGACCGACACGCTCGACGCTGAGGTCATTGCCCTCTTC
GCTGAACGCATCAGACCACCGGCCAGGCCCCTGCCGGAGCCGGAGAGAAGCCATTTTGCCGAGCTTGTGAGCCGGCGGCGGCAGATCATCGGGATGATCG
GTATGGAGACGAACCGTCGCGATCAAGCCGTGGACAAGCAACTGATCCGGCGAGTCGACCGGCACATCGCCTTCTTGGAGCGGGAGCTCGTGGAGCTCGA
CCGCGACATCGACCGAGCCATCAAGGCCTCTCCGGTCTGGTGCGAGACCGAGGCGTTGCTCAAGTCCGTCCCCGGGATCGGTGACGTCACCGCGCGCACG
CTTCTGGCTCAGTTGCCTGAGCTCGGCACCATTGGCCGCCACCAGCTTGCAGCACTCGTCGGCATCGCTCCGATCAACCGCGACTCGGGCCTGATGCGAG
GCCGCCGGTCCATCGCGGGCGGGCGAACGTCAGTGCGGGGCGTGCTGTACATGGCCGCTCTGACCGCGATCCGGCGAGGCTCTCCCTTCCGGCCCTTTTA
TGAGCGGCTCACTCAGCGCGGTCGGCCGAGGAAGGTCGCCCTCGTGGCCGTAATGCGAAAGCTCCTGGTGACGCTCAACGCCATCGTCCGCGAACGCACG
CCCTGGCGGCCACTCGCCGCTTGACCTTCAACACAGCCGCTCCGTCC
TGGTGCGGCCCTCACCTTCACAGTCCCGAACCCGGACAGCCGCTCGGGCCCGAGCCCGCATTTGCAAGGTAGGGTCATGGACGAACACCGCACCATCTTC
GTCGGCATCGACGTATCCAAGGACCGCCTCGACGTTCATCTGAGACCCTCGGACGAGGCGTTGCATGTCCCACGGGACGCGAAAGGGCTGGATACCCTCG
CTCGCCGTCTTGGCCGCCTCCCTGTCGCTCTCGTCGTCCTTGAAGCCACAGGCGGCTTCGAGGCGAGCGTGGCTGCAGCGTTGGCAGCGGTCGGGCTGCC
GCTCTGCATCGTCAACCCACGCCAGATCCGCGATTTCGCCAGAGCCATGGGTCGTCTGGCGAAGACCGACACGCTCGACGCTGAGGTCATTGCCCTCTTC
GCTGAACGCATCAGACCACCGGCCAGGCCCCTGCCGGAGCCGGAGAGAAGCCATTTTGCCGAGCTTGTGAGCCGGCGGCGGCAGATCATCGGGATGATCG
GTATGGAGACGAACCGTCGCGATCAAGCCGTGGACAAGCAACTGATCCGGCGAGTCGACCGGCACATCGCCTTCTTGGAGCGGGAGCTCGTGGAGCTCGA
CCGCGACATCGACCGAGCCATCAAGGCCTCTCCGGTCTGGTGCGAGACCGAGGCGTTGCTCAAGTCCGTCCCCGGGATCGGTGACGTCACCGCGCGCACG
CTTCTGGCTCAGTTGCCTGAGCTCGGCACCATTGGCCGCCACCAGCTTGCAGCACTCGTCGGCATCGCTCCGATCAACCGCGACTCGGGCCTGATGCGAG
GCCGCCGGTCCATCGCGGGCGGGCGAACGTCAGTGCGGGGCGTGCTGTACATGGCCGCTCTGACCGCGATCCGGCGAGGCTCTCCCTTCCGGCCCTTTTA
TGAGCGGCTCACTCAGCGCGGTCGGCCGAGGAAGGTCGCCCTCGTGGCCGTAATGCGAAAGCTCCTGGTGACGCTCAACGCCATCGTCCGCGAACGCACG
CCCTGGCGGCCACTCGCCGCTTGACCTTCAACACAGCCGCTCCGTCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 948 bp | 315 aa | 177 | 1124 | + | No |
Chemistry : DEDD
ORF sequence :
MDEHRTIFVGIDVSKDRLDVHLRPSDEALHVPRDAKGLDTLARRLGRLPVALVVLEATGGFEASVAAALAAVGLPLCIVNPRQIRDFARAMGRLAKTDTL
DAEVIALFAERIRPPARPLPEPERSHFAELVSRRRQIIGMIGMETNRRDQAVDKQLIRRVDRHIAFLERELVELDRDIDRAIKASPVWCETEALLKSVPG
IGDVTARTLLAQLPELGTIGRHQLAALVGIAPINRDSGLMRGRRSIAGGRTSVRGVLYMAALTAIRRGSPFRPFYERLTQRGRPRKVALVAVMRKLLVTL
NAIVRERTPWRPLAA
DAEVIALFAERIRPPARPLPEPERSHFAELVSRRRQIIGMIGMETNRRDQAVDKQLIRRVDRHIAFLERELVELDRDIDRAIKASPVWCETEALLKSVPG
IGDVTARTLLAQLPELGTIGRHQLAALVGIAPINRDSGLMRGRRSIAGGRTSVRGVLYMAALTAIRRGSPFRPFYERLTQRGRPRKVALVAVMRKLLVTL
NAIVRERTPWRPLAA
Blast result :
Comments
ISMno7 is 67% aa similar to ISHne3.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.