ISMpo5
- Family IS5
- Group IS1031
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010725 | ND | Methylobacterium populi | Methylobacterium populi BJ001 |
DNA section
IS Length : 891 bp
Ends
IR Length : 22/26
IRL : GAGCCTGTTTGACTGAGCGGCACAGTGGCGCGTTGGCTTCCTGAGGAGAA
IRR : GAGCCTGTTTGACTACGCTGCGCAGTCTTGCTCTCGGTGATAGGCGCGCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAAGACCCTC | TCA | CATTTTTGTC | 3 |
DNA sequence
GAGCCTGTTTGACTGAGCGGCACAGTGGCGCGTTGGCTTCCTGAGGAGAAGCCGATGTGGACGAACGCAGATCGTGAGACGTATCGGGATCGGAGCAGTC
GCTACCCGAGTGACCTGACGGACGCGCAGTGGGCAACAGTCGCGCCGTTGCTGGGTGGCTACGATCCTCTGACGGCGGACCTGCGCGAGATGGTCAACGC
CTGCCTGTACCTGGAGAAGACCGGCTGCCCCTGGCGGTATTTGCCGACCGACTTCGGTCCCTGGGAGACTGTGCGGACGTGGCATGACCGTTTCCGCGCA
GATGGGCTCTGGTCGGAGATCGCTGGCTTGTTGACGCGGGCGGTCCGGCAGAAGCGCGGGCGTCCGGCCGAGCCCAGAACCGCGATCCTCGACTCGCAGA
GCGTGGTGTCGGGGCCGCAGGCTGGGGTGCGGGGCACGGACGGCAAGAAGAAGGTCCGAGGCATCAAGCGCCACGTGCTCACCTGCTCGCGCGGCTTCGT
TCTGGCGGCGCTCGTCACGGCCGCCAACGTGCACGACACCCAGGCTGCGGGCTGGCTGTTCGACCGTGCCGCGCAGGCCGGCTGGGCGCCCGAGCGCGTG
AAGGTGGACGGCATCTATACTGGCGCGCGCATGGATGAAGCCGCCGCTCGTCATGGTCTCGACGTTCAGGTCTCGACCCGCCCACCAGAGGTCAAAGGCT
TCGAGCCACTGCCCTTGCGCTGGCGCATTGAGGCAACGTTCGGCACCCTCTCCACGCGCTACCGTCGCCTGACGCGGCACTGGGAGCAGAGCCCGGCGGC
GGCCGAAGACGCCATCAGCATCGCCAACTGCCACCGCCTCCTGCGCGCCTATCACCGAGAGCAAGACTGCGCAGCGTAGTCAAACAGGCTC
GCTACCCGAGTGACCTGACGGACGCGCAGTGGGCAACAGTCGCGCCGTTGCTGGGTGGCTACGATCCTCTGACGGCGGACCTGCGCGAGATGGTCAACGC
CTGCCTGTACCTGGAGAAGACCGGCTGCCCCTGGCGGTATTTGCCGACCGACTTCGGTCCCTGGGAGACTGTGCGGACGTGGCATGACCGTTTCCGCGCA
GATGGGCTCTGGTCGGAGATCGCTGGCTTGTTGACGCGGGCGGTCCGGCAGAAGCGCGGGCGTCCGGCCGAGCCCAGAACCGCGATCCTCGACTCGCAGA
GCGTGGTGTCGGGGCCGCAGGCTGGGGTGCGGGGCACGGACGGCAAGAAGAAGGTCCGAGGCATCAAGCGCCACGTGCTCACCTGCTCGCGCGGCTTCGT
TCTGGCGGCGCTCGTCACGGCCGCCAACGTGCACGACACCCAGGCTGCGGGCTGGCTGTTCGACCGTGCCGCGCAGGCCGGCTGGGCGCCCGAGCGCGTG
AAGGTGGACGGCATCTATACTGGCGCGCGCATGGATGAAGCCGCCGCTCGTCATGGTCTCGACGTTCAGGTCTCGACCCGCCCACCAGAGGTCAAAGGCT
TCGAGCCACTGCCCTTGCGCTGGCGCATTGAGGCAACGTTCGGCACCCTCTCCACGCGCTACCGTCGCCTGACGCGGCACTGGGAGCAGAGCCCGGCGGC
GGCCGAAGACGCCATCAGCATCGCCAACTGCCACCGCCTCCTGCGCGCCTATCACCGAGAGCAAGACTGCGCAGCGTAGTCAAACAGGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 825 bp | 274 aa | 55 | 879 | + | No |
Chemistry : DDE
ORF sequence :
MWTNADRETYRDRSSRYPSDLTDAQWATVAPLLGGYDPLTADLREMVNACLYLEKTGCPWRYLPTDFGPWETVRTWHDRFRADGLWSEIAGLLTRAVRQK
RGRPAEPRTAILDSQSVVSGPQAGVRGTDGKKKVRGIKRHVLTCSRGFVLAALVTAANVHDTQAAGWLFDRAAQAGWAPERVKVDGIYTGARMDEAAARH
GLDVQVSTRPPEVKGFEPLPLRWRIEATFGTLSTRYRRLTRHWEQSPAAAEDAISIANCHRLLRAYHREQDCAA
RGRPAEPRTAILDSQSVVSGPQAGVRGTDGKKKVRGIKRHVLTCSRGFVLAALVTAANVHDTQAAGWLFDRAAQAGWAPERVKVDGIYTGARMDEAAARH
GLDVQVSTRPPEVKGFEPLPLRWRIEATFGTLSTRYRRLTRHWEQSPAAAEDAISIANCHRLLRAYHREQDCAA
Blast result :
Comments
ISMpo5 is 53% aa similar to ISRtr3.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C. and Richardson,P. (2008) Direct submission GenBank.