ISMtsp14
- Family IS5
- Group IS1031
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 860 bp
Ends
IR Length : 22/29
IRL : GAGCGTGTTATGAACCTACGATGTAGCGTAGGCGTTGAAGGGCATGAGCA
IRR : GAGCGTGTTATGAACTTTCTACTATGCGTCCGAGCTTTCTGAGCATGTCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTCGTGGGCC | TA | GATGCTCATC | 2 |
DNA sequence
GAGCGTGTTATGAACCTACGATGTAGCGTAGGCGTTGAAGGGCATGAGCACCGATCGCGCCGCCTACCCGTCCGACGTGTCCGATGAGGAGTGGGCGCTG
GTGGCGCCCTACCTGGCGCTGCTGCGCGAGGACTCGGGCCAGCGTGACCACGATCTGCGCGAGGTGTTCAACGGCTTGCGCTACATCGTCAAGACCGGCG
CGCCGTGGCGGTTCATGCCCCACGACCTGCCGCCGTGGGCAGCGGTCTACCAGCAGACCCAGCGCTGGTTGGCCGCCGAGTGCTTCGCCGATGTGGCCGG
CGACCTGCGTGCTGTGCTGCGGCAGGCGGCCGGGCGTGAGCCGGAGCCCTCGGCGGTGATCCTGGACAGCCGGACCCAGCGCTCCTCGCCCGAGAGCGGC
GAGCGGGCCGGCTACGACGGGGCCAAGCGCATGCGCGGGTCGAAGGTGCATCTGGCGGTCGACACGCCCGGTCACGGGGTGGCGCTGCACGTCACGCCGG
CGGATGTCGATGATCGCAGTCAGGTCGGCACGCTGACCTGCGTGGTCCAGGCGGAGACGGACGGGGGCGTGGAGAAGGCATTCGTCGACCAGGGCTACAC
AGGTGAGAAGGCAGCGACCGCAGCGCAGGCGAACGGGATCGCGTTGGAGGTGGTCAAGGCCCCGGAGGCCAAGCGCGGCTTCGTGTTGCTGCCGCGGCGT
TGGGTGGTGGAGCGCTCGCTCGCCTGGGCGGTGCGCTGCCGCCGGCTGGTCAAGGACTACGAGCGTTATGCGAGCACACTGGCTGGAATGTACATGGTCG
CCTTCGTCTGTGACATGCTCAGAAAGCTCGGACGCATAGTAGAAAGTTCATAACACGCTC
GTGGCGCCCTACCTGGCGCTGCTGCGCGAGGACTCGGGCCAGCGTGACCACGATCTGCGCGAGGTGTTCAACGGCTTGCGCTACATCGTCAAGACCGGCG
CGCCGTGGCGGTTCATGCCCCACGACCTGCCGCCGTGGGCAGCGGTCTACCAGCAGACCCAGCGCTGGTTGGCCGCCGAGTGCTTCGCCGATGTGGCCGG
CGACCTGCGTGCTGTGCTGCGGCAGGCGGCCGGGCGTGAGCCGGAGCCCTCGGCGGTGATCCTGGACAGCCGGACCCAGCGCTCCTCGCCCGAGAGCGGC
GAGCGGGCCGGCTACGACGGGGCCAAGCGCATGCGCGGGTCGAAGGTGCATCTGGCGGTCGACACGCCCGGTCACGGGGTGGCGCTGCACGTCACGCCGG
CGGATGTCGATGATCGCAGTCAGGTCGGCACGCTGACCTGCGTGGTCCAGGCGGAGACGGACGGGGGCGTGGAGAAGGCATTCGTCGACCAGGGCTACAC
AGGTGAGAAGGCAGCGACCGCAGCGCAGGCGAACGGGATCGCGTTGGAGGTGGTCAAGGCCCCGGAGGCCAAGCGCGGCTTCGTGTTGCTGCCGCGGCGT
TGGGTGGTGGAGCGCTCGCTCGCCTGGGCGGTGCGCTGCCGCCGGCTGGTCAAGGACTACGAGCGTTATGCGAGCACACTGGCTGGAATGTACATGGTCG
CCTTCGTCTGTGACATGCTCAGAAAGCTCGGACGCATAGTAGAAAGTTCATAACACGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 810 bp | 269 aa | 44 | 853 | + | No |
Chemistry : DDE
ORF sequence :
MSTDRAAYPSDVSDEEWALVAPYLALLREDSGQRDHDLREVFNGLRYIVKTGAPWRFMPHDLPPWAAVYQQTQRWLAAECFADVAGDLRAVLRQAAGREP
EPSAVILDSRTQRSSPESGERAGYDGAKRMRGSKVHLAVDTPGHGVALHVTPADVDDRSQVGTLTCVVQAETDGGVEKAFVDQGYTGEKAATAAQANGIA
LEVVKAPEAKRGFVLLPRRWVVERSLAWAVRCRRLVKDYERYASTLAGMYMVAFVCDMLRKLGRIVESS
EPSAVILDSRTQRSSPESGERAGYDGAKRMRGSKVHLAVDTPGHGVALHVTPADVDDRSQVGTLTCVVQAETDGGVEKAFVDQGYTGEKAATAAQANGIA
LEVVKAPEAKRGFVLLPRRWVVERSLAWAVRCRRLVKDYERYASTLAGMYMVAFVCDMLRKLGRIVESS
Blast result :
Comments
ISMtsp14 is 89% aa similar to ISMdi26.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.