ISMtsp16

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010511 ND Methylobacterium sp.
Methylobacterium sp. 4-46
DNA section
IS Length : 1023 bp

Ends


IR Length : 19/26

IRL : TGTGCAGTCCCGGAGTGTGATGGTGCATCATCGGCGCTGACGCGTTTGGT
IRR : TGTATGGTCCCGGTATGAGGTGGTGCGGGTCGATTTTGAAGCGGTCTGGG

Insertion site


Left flankDirect repeatRight flankDR Length
GACGCGCTCGCCTAGGCGTTCCAGCG6

DNA sequence

TGTGCAGTCCCGGAGTGTGATGGTGCATCATCGGCGCTGACGCGTTTGGTGGAGGATGCACTATGGCAGGAGTTCTTCACGGCAGCGCCCGAACGACGCC
GCGTGTTCGAGCCGAGCTCCAAGCGTCGAAAGAAAGTAGCCGCGCCCTTGCCGCCCAGTACGGCTTGAACCCGAAGACGGTCGCCAAATGGCGCAGGCGG
GCGGTGACGACCGATGCGCCGATGGGGCCGAAGAAGCCCAGGAGCACGGTCATGACGCCGGCCGAGGAGGCGATCGTGGTCGAGTTCCGGCGGCGGACGC
TGCTGCCGCTCGATGATGTCCTGGGCTGCCTGCGCGAGACTATCCCCAGCCTGAGCCGCTCTGCCCTGCATCGATGCCTGCAACGGCATGGCATCTCCCG
CCTCCCGGCAGCCGAGACGGCGCTGACACGCAAACGCTTCAAGACCTACGACATCGGCTACGTGCATATCGACAGCTGCGAGCTGCGCCATGCCGACGGC
AAGCTGATCATGTTCCTGGCCATCGACCGCGTCTCGAAGTTCACCTACGTCGAGTTCCACGACAGCGCGGGTAAGATGGAAGGATCAGCCTTCCTGAGGA
AGGCCGTGGCAGTCTTTCCCTACAAGATACACACGGTCCTGACCGACAATGGCATGGCTTTCGCCGACCTGCCGAAGAACAGGACTGGGCCGAGTCGGCG
CTTTCTCGGTCCACATATCTTCGATCGCGTCTGTCTCGAGCACGGCATCGAGCATCGATTGACCAAGCCCTACCATCCTTGGACGAACGGTCAAGCCGAG
CGCATGAACCGGACCATCAAGGATGCGACCGTCAGAGTCTTCCACTATGAAGATCTGGAGAGCTTGAAGGCACACGTCCTGGCCTTCGTCACAGCCTACA
ACTTCGCCAAGCATCTCAAGTCGTTGCGCTGGAAGACCCCGTTCCAGAGCATCTGTCATGCCTGGACCAAAGACCCAGACCGCTTCAAAATCGACCCGCA
CCACCTCATACCGGGACCATACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
966 bp321 aa631028+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAGVLHGSARTTPRVRAELQASKESSRALAAQYGLNPKTVAKWRRRAVTTDAPMGPKKPRSTVMTPAEEAIVVEFRRRTLLPLDDVLGCLRETIPSLSRS
ALHRCLQRHGISRLPAAETALTRKRFKTYDIGYVHIDSCELRHADGKLIMFLAIDRVSKFTYVEFHDSAGKMEGSAFLRKAVAVFPYKIHTVLTDNGMAF
ADLPKNRTGPSRRFLGPHIFDRVCLEHGIEHRLTKPYHPWTNGQAERMNRTIKDATVRVFHYEDLESLKAHVLAFVTAYNFAKHLKSLRWKTPFQSICHA
WTKDPDRFKIDPHHLIPGPYT

 

Blast result :
Comments
There are no STOP codon, the transposase use the first Stop codon after the end of the IRR. The last amino acid and the codon stop were in the insertion site.
ISMtsp16 is 72% aa similar to ISMdi8.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.

2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.