ISBf9
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FM200793 | ND | Bacteroides fragilis | Bacteroides fragilis MN35 |
DNA section
IS Length : 1845 bp
Ends
IR Length : 13/14
IRL : CACGGCCCTTTCATTTAACAACCGCCTTCCTCCCTTGTCCCCCCCCACAA
IRR : CACGGCTCTTTCATCAGGGCGGACGCTCAATAAGTATAACATCTTATCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGATGTATTCTT | GTTGTACGGCAC | AAAAGTAAAGAA | 12 |
DNA sequence
CACGGCCCTTTCATTTAACAACCGCCTTCCTCCCTTGTCCCCCCCCACAAAACCCTCCATTCGCACACAGCGATGCGGAAGCAGTGCTTCGTTGTTTCTT
TTTTAAGAAAGAATCCGACCGGCTATTACCGGAGAAGTGTAGTAGATTAACCATTGTCATACAACTCTTTATCCCAGCCCGCATACCCGGGCCGATAAGC
CCGCATGCCCGGGCTGAGATAAGGATTCAACCATTTGCACTAAAGAAAGTAAGGGAAATGAAATGCTTTTAGAGAGATGAACGGATAAGAAATTGGATGT
ATCCATTTGTTTTCCAAATAGTTAATACTAAAATGTTCCCTAAAACAGCGGGTGGAAGATGGAAGATGGGGGTGGAAGATAAATGGCATAAAAACCGCAT
CTTCCACCAATCTATACATCTTACAATCAACGATATGCATTCTAAAAGGTGGAAGATGGAAGATCGAAACGTATTTTTTGTATGAGAGGAAGGCGGGGTA
AATGAAAGAGCAGGGCGGACGCTCAATAAGTATAACATCTTATTAGGGTTGTATTATTTCCTAAATATGTAGTCCCTTCCCTGTATTTTTCAATATTTCC
TGCTCCTTTTGTCTGGGTGTAATATAATTCATTACATTTGTTTTTTACTATATTAAATCCATATCGCAATATGACCATTCAAGCATTTTCAGCTATTATT
CCTGATGGAAGAGATGATAAGAATAAAATATATCAGTCTAACGAAATAGTGTTCATCGCCCTAGTCGCTGTTATCTGCGGTGCTGATACGTGGAACGAAA
TAGAGACATTCGGAAAAACACATGAATCATATTTCAAGGCTCGTCTTCCGGGTTTGGTTTCTATTCCTTCTCATGATACCTTGAGCCGTTTCTTCTCCAT
ATTGGATATCGATTGGTTTGAAGAATGTTTCAGGTTGTGGGTTGATGACATCTGCCGTAGAATTCCCGGAGTGGTAGCTATTGATGGAAAAGCCATTTGT
GATAATCCCGATAAAAGTAGTAACTCAAAAAATGGAGTGAGAAGTAAACTCTACATGGTCAGTGCCTGGTCTGTATCTAACGGTATTTGCCTTGGGCAAA
GAAAAGTAGAAGAAAAATCGAATGAAACAAAAGCTATCCCCGAGCTGATAAAGACACTGGATCTTGAGAATTGTATCATAACCATTGATGCTATCGGCTG
TCAGAAATCAATCACTAAACTAATAATAGAGAACAAGGCTGACTATATTTTATGTGCCAAAGATAATCACGAAGCACTCAGGAATATAATAGAGTTTAAT
CTTAGTGAGGAATCGAGATACTATTTATGTCACGCAAAAAGGTACTTTGAGGAAAACAAAGGGCATGGAAGAAGTGAATACAGAGAATGTGTATGCATAA
GCGCTAAAAATCTTCAGTATTTTCTCAAAGGCTGGACGGGAATCAAGACATTGGCAATGATAAATTCTATTAGAAAAATGGGGGATAAAGAGGCTGTCAT
GGAAACAAGGTATTATATATCATCATTGGAACCTGACCCGATTATCATACTCAAATCGATTAGACCACACTGGGAGGTTGAAAATAACCTACATTGGGTA
CTTGATATAGGATTCAGAGAAGATGATGACAGGAAAATAGGAAATGCAGCTATCAACTTTTCTGCCATACCAAAGTTAGCACTCATGCTTTTGAAACAGA
GTGACATCAAACTGGGAATGGCAGGAAAGAGGAAAGCATGTGGATGGGATGAGAAAATAAGAGATAAAGTCATTGGTATTGAAAAAATATAGAAAATGAT
AAGATGTTATACTTATTGAGCGTCCGCCCTGATGAAAGAGCCGTG
TTTTAAGAAAGAATCCGACCGGCTATTACCGGAGAAGTGTAGTAGATTAACCATTGTCATACAACTCTTTATCCCAGCCCGCATACCCGGGCCGATAAGC
CCGCATGCCCGGGCTGAGATAAGGATTCAACCATTTGCACTAAAGAAAGTAAGGGAAATGAAATGCTTTTAGAGAGATGAACGGATAAGAAATTGGATGT
ATCCATTTGTTTTCCAAATAGTTAATACTAAAATGTTCCCTAAAACAGCGGGTGGAAGATGGAAGATGGGGGTGGAAGATAAATGGCATAAAAACCGCAT
CTTCCACCAATCTATACATCTTACAATCAACGATATGCATTCTAAAAGGTGGAAGATGGAAGATCGAAACGTATTTTTTGTATGAGAGGAAGGCGGGGTA
AATGAAAGAGCAGGGCGGACGCTCAATAAGTATAACATCTTATTAGGGTTGTATTATTTCCTAAATATGTAGTCCCTTCCCTGTATTTTTCAATATTTCC
TGCTCCTTTTGTCTGGGTGTAATATAATTCATTACATTTGTTTTTTACTATATTAAATCCATATCGCAATATGACCATTCAAGCATTTTCAGCTATTATT
CCTGATGGAAGAGATGATAAGAATAAAATATATCAGTCTAACGAAATAGTGTTCATCGCCCTAGTCGCTGTTATCTGCGGTGCTGATACGTGGAACGAAA
TAGAGACATTCGGAAAAACACATGAATCATATTTCAAGGCTCGTCTTCCGGGTTTGGTTTCTATTCCTTCTCATGATACCTTGAGCCGTTTCTTCTCCAT
ATTGGATATCGATTGGTTTGAAGAATGTTTCAGGTTGTGGGTTGATGACATCTGCCGTAGAATTCCCGGAGTGGTAGCTATTGATGGAAAAGCCATTTGT
GATAATCCCGATAAAAGTAGTAACTCAAAAAATGGAGTGAGAAGTAAACTCTACATGGTCAGTGCCTGGTCTGTATCTAACGGTATTTGCCTTGGGCAAA
GAAAAGTAGAAGAAAAATCGAATGAAACAAAAGCTATCCCCGAGCTGATAAAGACACTGGATCTTGAGAATTGTATCATAACCATTGATGCTATCGGCTG
TCAGAAATCAATCACTAAACTAATAATAGAGAACAAGGCTGACTATATTTTATGTGCCAAAGATAATCACGAAGCACTCAGGAATATAATAGAGTTTAAT
CTTAGTGAGGAATCGAGATACTATTTATGTCACGCAAAAAGGTACTTTGAGGAAAACAAAGGGCATGGAAGAAGTGAATACAGAGAATGTGTATGCATAA
GCGCTAAAAATCTTCAGTATTTTCTCAAAGGCTGGACGGGAATCAAGACATTGGCAATGATAAATTCTATTAGAAAAATGGGGGATAAAGAGGCTGTCAT
GGAAACAAGGTATTATATATCATCATTGGAACCTGACCCGATTATCATACTCAAATCGATTAGACCACACTGGGAGGTTGAAAATAACCTACATTGGGTA
CTTGATATAGGATTCAGAGAAGATGATGACAGGAAAATAGGAAATGCAGCTATCAACTTTTCTGCCATACCAAAGTTAGCACTCATGCTTTTGAAACAGA
GTGACATCAAACTGGGAATGGCAGGAAAGAGGAAAGCATGTGGATGGGATGAGAAAATAAGAGATAAAGTCATTGGTATTGAAAAAATATAGAAAATGAT
AAGATGTTATACTTATTGAGCGTCCGCCCTGATGAAAGAGCCGTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1119 bp | 373 aa | 671 | 1789 | + | No |
Chemistry : Unknow
ORF sequence :
MTIQAFSAIIPDGRDDKNKIYQSNEIVFIALVAVICGADTWNEIETFGKTHESYFKARLPGLVSIPSHDTLSRFFSILDIDWFEECFRLWVDDICRRIPG
VVAIDGKAICDNPDKSSNSKNGVRSKLYMVSAWSVSNGICLGQRKVEEKSNETKAIPELIKTLDLENCIITIDAIGCQKSITKLIIENKADYILCAKDNH
EALRNIIEFNLSEESRYYLCHAKRYFEENKGHGRSEYRECVCISAKNLQYFLKGWTGIKTLAMINSIRKMGDKEAVMETRYYISSLEPDPIIILKSIRPH
WEVENNLHWVLDIGFREDDDRKIGNAAINFSAIPKLALMLLKQSDIKLGMAGKRKACGWDEKIRDKVIGIEKI
VVAIDGKAICDNPDKSSNSKNGVRSKLYMVSAWSVSNGICLGQRKVEEKSNETKAIPELIKTLDLENCIITIDAIGCQKSITKLIIENKADYILCAKDNH
EALRNIIEFNLSEESRYYLCHAKRYFEENKGHGRSEYRECVCISAKNLQYFLKGWTGIKTLAMINSIRKMGDKEAVMETRYYISSLEPDPIIILKSIRPH
WEVENNLHWVLDIGFREDDDRKIGNAAINFSAIPKLALMLLKQSDIKLGMAGKRKACGWDEKIRDKVIGIEKI
Blast result :
Comments
ISBf9 is 59% aa similar to ISBaov2.
References
1] Quesada Alberto. (2008) Direct submission.
2] Garcia,N., Gutierrez,G., Lorenzo,M., Vadillo,S., Piriz,S. and Quesada,A. (2009) Antimicrob. Agents Chemother. 53 (6), 2677-2678
2] Garcia,N., Gutierrez,G., Lorenzo,M., Vadillo,S., Piriz,S. and Quesada,A. (2009) Antimicrob. Agents Chemother. 53 (6), 2677-2678