ISBf9

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FM200793 ND Bacteroides fragilis
Bacteroides fragilis MN35
DNA section
IS Length : 1845 bp

Ends


IR Length : 13/14

IRL : CACGGCCCTTTCATTTAACAACCGCCTTCCTCCCTTGTCCCCCCCCACAA
IRR : CACGGCTCTTTCATCAGGGCGGACGCTCAATAAGTATAACATCTTATCAT

Insertion site


Left flankDirect repeatRight flankDR Length
GGATGTATTCTTGTTGTACGGCACAAAAGTAAAGAA12

DNA sequence

CACGGCCCTTTCATTTAACAACCGCCTTCCTCCCTTGTCCCCCCCCACAAAACCCTCCATTCGCACACAGCGATGCGGAAGCAGTGCTTCGTTGTTTCTT
TTTTAAGAAAGAATCCGACCGGCTATTACCGGAGAAGTGTAGTAGATTAACCATTGTCATACAACTCTTTATCCCAGCCCGCATACCCGGGCCGATAAGC
CCGCATGCCCGGGCTGAGATAAGGATTCAACCATTTGCACTAAAGAAAGTAAGGGAAATGAAATGCTTTTAGAGAGATGAACGGATAAGAAATTGGATGT
ATCCATTTGTTTTCCAAATAGTTAATACTAAAATGTTCCCTAAAACAGCGGGTGGAAGATGGAAGATGGGGGTGGAAGATAAATGGCATAAAAACCGCAT
CTTCCACCAATCTATACATCTTACAATCAACGATATGCATTCTAAAAGGTGGAAGATGGAAGATCGAAACGTATTTTTTGTATGAGAGGAAGGCGGGGTA
AATGAAAGAGCAGGGCGGACGCTCAATAAGTATAACATCTTATTAGGGTTGTATTATTTCCTAAATATGTAGTCCCTTCCCTGTATTTTTCAATATTTCC
TGCTCCTTTTGTCTGGGTGTAATATAATTCATTACATTTGTTTTTTACTATATTAAATCCATATCGCAATATGACCATTCAAGCATTTTCAGCTATTATT
CCTGATGGAAGAGATGATAAGAATAAAATATATCAGTCTAACGAAATAGTGTTCATCGCCCTAGTCGCTGTTATCTGCGGTGCTGATACGTGGAACGAAA
TAGAGACATTCGGAAAAACACATGAATCATATTTCAAGGCTCGTCTTCCGGGTTTGGTTTCTATTCCTTCTCATGATACCTTGAGCCGTTTCTTCTCCAT
ATTGGATATCGATTGGTTTGAAGAATGTTTCAGGTTGTGGGTTGATGACATCTGCCGTAGAATTCCCGGAGTGGTAGCTATTGATGGAAAAGCCATTTGT
GATAATCCCGATAAAAGTAGTAACTCAAAAAATGGAGTGAGAAGTAAACTCTACATGGTCAGTGCCTGGTCTGTATCTAACGGTATTTGCCTTGGGCAAA
GAAAAGTAGAAGAAAAATCGAATGAAACAAAAGCTATCCCCGAGCTGATAAAGACACTGGATCTTGAGAATTGTATCATAACCATTGATGCTATCGGCTG
TCAGAAATCAATCACTAAACTAATAATAGAGAACAAGGCTGACTATATTTTATGTGCCAAAGATAATCACGAAGCACTCAGGAATATAATAGAGTTTAAT
CTTAGTGAGGAATCGAGATACTATTTATGTCACGCAAAAAGGTACTTTGAGGAAAACAAAGGGCATGGAAGAAGTGAATACAGAGAATGTGTATGCATAA
GCGCTAAAAATCTTCAGTATTTTCTCAAAGGCTGGACGGGAATCAAGACATTGGCAATGATAAATTCTATTAGAAAAATGGGGGATAAAGAGGCTGTCAT
GGAAACAAGGTATTATATATCATCATTGGAACCTGACCCGATTATCATACTCAAATCGATTAGACCACACTGGGAGGTTGAAAATAACCTACATTGGGTA
CTTGATATAGGATTCAGAGAAGATGATGACAGGAAAATAGGAAATGCAGCTATCAACTTTTCTGCCATACCAAAGTTAGCACTCATGCTTTTGAAACAGA
GTGACATCAAACTGGGAATGGCAGGAAAGAGGAAAGCATGTGGATGGGATGAGAAAATAAGAGATAAAGTCATTGGTATTGAAAAAATATAGAAAATGAT
AAGATGTTATACTTATTGAGCGTCCGCCCTGATGAAAGAGCCGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1119 bp373 aa6711789+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTIQAFSAIIPDGRDDKNKIYQSNEIVFIALVAVICGADTWNEIETFGKTHESYFKARLPGLVSIPSHDTLSRFFSILDIDWFEECFRLWVDDICRRIPG
VVAIDGKAICDNPDKSSNSKNGVRSKLYMVSAWSVSNGICLGQRKVEEKSNETKAIPELIKTLDLENCIITIDAIGCQKSITKLIIENKADYILCAKDNH
EALRNIIEFNLSEESRYYLCHAKRYFEENKGHGRSEYRECVCISAKNLQYFLKGWTGIKTLAMINSIRKMGDKEAVMETRYYISSLEPDPIIILKSIRPH
WEVENNLHWVLDIGFREDDDRKIGNAAINFSAIPKLALMLLKQSDIKLGMAGKRKACGWDEKIRDKVIGIEKI

 

Blast result :
Comments
ISBf9 is 59% aa similar to ISBaov2.
References
1] Quesada Alberto. (2008) Direct submission.
2] Garcia,N., Gutierrez,G., Lorenzo,M., Vadillo,S., Piriz,S. and Quesada,A. (2009) Antimicrob. Agents Chemother. 53 (6), 2677-2678