ISHwa2
- Family IS4
- Group IS50
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM180088 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi DSM 16790 |
DNA section
IS Length : 1668 bp
Ends
IR Length : 24/31
IRL : CTGTCTCTTACCCACAAGTCCTAATGGAAGAGTAGACGAACCAAGATTGG
IRR : CTGTCTCTTACCCATAACTCAATACTAGAGGGTAATTTCAACCAAATCAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAACTCCCA | GTTTTGATGC | GGGGATGAGT | 10 |
DNA sequence
CTGTCTCTTACCCACAAGTCCTAATGGAAGAGTAGACGAACCAAGATTGGTAGATGGGGCGTCGCTCACGGAGTTGGAAGCCAGAACTCGATGAAGATGG
GCAGCTGTGTGACATGGATGTTTCAGGATGGATTCAAACGGAGTTTCGATCAGCCGAGTTTGGAGACAAGCGCCTGAGTGACCGACTAGTACAACTTGGG
GATGAACTCGGCATCGGCAGCTCGCCTGCCGAGTCCATCCCTGCTGCCTGCGGAGACTGGGCGTCCACAAAAGCTACATACCGATTTTGCGATAATGAGA
GTGTGGATCCCAACGAGGTTCTCTCTGCTCACAAGCAGCAACAGCAATCAAGAGTGAGTCGGTCAGACGAACTCCTGATTGTCTCCAATACCACCGAACT
CGTGTTTCCGAGACACCCCTCCAAGGAGGGTCTCGGCGATATTGGCAACTCTGAAATGGATCTCGAAGGTATCAAGCCTCACTCCACGATCGGAATCAAT
CCACGGACCCATCGAATGACTGGGGTCATCGATCAGCAGCCGCTGATCGAGGACCAGCAGGCCGATGAGAAGTACGATGCCAACGGCAAAGCAGAGCCGA
TTCAACTTGACAGTGAACATGAGAAATGGAGCCGTGGCGACAGGCAAGCCAGAGACTGGCTTGCCGACGATATCCGCCCGCTATTTATCCATGACCGAGG
CGCAGATTCATTCGCGTTCTACGAGGGAGTCACCAGAGAGATGGAAAATGCTGGCTTCATCATCCGAGCGAGTCAAAACCGACGGATTTGGACTGATGAT
GGTGAACCTGGAAAACTCTTTGACTGGAGCAGCGACCTTGCCGAGCAAGGTCGCAAAACAATCGAGATTCAACAGGGAGGTGGGCGCGAAGCGAGAACAG
CGGAGTTGTCGATAGCCACTGGAACGTGTGAGTTGCGCGCGCCAAAGAATAATCCTGAACAAGAGGGTTCAATCGAGGTGAATGTCGTGAGAGTTGACGA
GGTCGGTGAAGATGACGACCCGATTCAGTGGGTGTTGCTCACCACTGAATCGGTCGAAGAGTTTGAGGAAACGCTGACACTCATCGACTATTACGGTCTC
CGCTGGCGAATTGAAGACTGGCATAAAGTGCTCAAGAGTGGCTGTAACATCGAAGAACGGCAACTGCAGATTTGGGAGCGGATGGAAGTGTTGTTGAGCA
TGTATTCAGTGATCGCGTGGAAAGTTCTGGAGCTACGAGAACTTGCTCGTGATGACAGTTCAGTATCTCCGGCGGTCCTGCTGAGTGAGGCAGAGCGCAC
AATTCTGGAAACGAAATTTCCAGAATTGAGCGGTCAAGATGGGAAATCATACGCAGTGAGCGTGGCTAAACTCGGCGGTTATCTTGATCGTGGCTCAGAT
CCGCCACCAGGGTGGGAGACGATGTGGAAAGGACTCCGGAAGCTACGCATGTGGGCTGAAGGATACGAACTCGGTGCTGAATGAGCCCCGAAGCGGGCTC
ATTTAGCAGAACCCGCCGAAATAACGAGTTCAACTGAACTTTTCAAGCGGCTTCATGGATACTTCTCTAATCTTGGGCAGATACTGATGGAAATTTGATT
GATTTCTTCTTTTCATGCCTGATTTGGTTGAAATTACCCTCTAGTATTGAGTTATGGGTAAGAGACAG
GCAGCTGTGTGACATGGATGTTTCAGGATGGATTCAAACGGAGTTTCGATCAGCCGAGTTTGGAGACAAGCGCCTGAGTGACCGACTAGTACAACTTGGG
GATGAACTCGGCATCGGCAGCTCGCCTGCCGAGTCCATCCCTGCTGCCTGCGGAGACTGGGCGTCCACAAAAGCTACATACCGATTTTGCGATAATGAGA
GTGTGGATCCCAACGAGGTTCTCTCTGCTCACAAGCAGCAACAGCAATCAAGAGTGAGTCGGTCAGACGAACTCCTGATTGTCTCCAATACCACCGAACT
CGTGTTTCCGAGACACCCCTCCAAGGAGGGTCTCGGCGATATTGGCAACTCTGAAATGGATCTCGAAGGTATCAAGCCTCACTCCACGATCGGAATCAAT
CCACGGACCCATCGAATGACTGGGGTCATCGATCAGCAGCCGCTGATCGAGGACCAGCAGGCCGATGAGAAGTACGATGCCAACGGCAAAGCAGAGCCGA
TTCAACTTGACAGTGAACATGAGAAATGGAGCCGTGGCGACAGGCAAGCCAGAGACTGGCTTGCCGACGATATCCGCCCGCTATTTATCCATGACCGAGG
CGCAGATTCATTCGCGTTCTACGAGGGAGTCACCAGAGAGATGGAAAATGCTGGCTTCATCATCCGAGCGAGTCAAAACCGACGGATTTGGACTGATGAT
GGTGAACCTGGAAAACTCTTTGACTGGAGCAGCGACCTTGCCGAGCAAGGTCGCAAAACAATCGAGATTCAACAGGGAGGTGGGCGCGAAGCGAGAACAG
CGGAGTTGTCGATAGCCACTGGAACGTGTGAGTTGCGCGCGCCAAAGAATAATCCTGAACAAGAGGGTTCAATCGAGGTGAATGTCGTGAGAGTTGACGA
GGTCGGTGAAGATGACGACCCGATTCAGTGGGTGTTGCTCACCACTGAATCGGTCGAAGAGTTTGAGGAAACGCTGACACTCATCGACTATTACGGTCTC
CGCTGGCGAATTGAAGACTGGCATAAAGTGCTCAAGAGTGGCTGTAACATCGAAGAACGGCAACTGCAGATTTGGGAGCGGATGGAAGTGTTGTTGAGCA
TGTATTCAGTGATCGCGTGGAAAGTTCTGGAGCTACGAGAACTTGCTCGTGATGACAGTTCAGTATCTCCGGCGGTCCTGCTGAGTGAGGCAGAGCGCAC
AATTCTGGAAACGAAATTTCCAGAATTGAGCGGTCAAGATGGGAAATCATACGCAGTGAGCGTGGCTAAACTCGGCGGTTATCTTGATCGTGGCTCAGAT
CCGCCACCAGGGTGGGAGACGATGTGGAAAGGACTCCGGAAGCTACGCATGTGGGCTGAAGGATACGAACTCGGTGCTGAATGAGCCCCGAAGCGGGCTC
ATTTAGCAGAACCCGCCGAAATAACGAGTTCAACTGAACTTTTCAAGCGGCTTCATGGATACTTCTCTAATCTTGGGCAGATACTGATGGAAATTTGATT
GATTTCTTCTTTTCATGCCTGATTTGGTTGAAATTACCCTCTAGTATTGAGTTATGGGTAAGAGACAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1431 bp | 476 aa | 54 | 1484 | + | No |
Chemistry : DDE
ORF sequence :
MGRRSRSWKPELDEDGQLCDMDVSGWIQTEFRSAEFGDKRLSDRLVQLGDELGIGSSPAESIPAACGDWASTKATYRFCDNESVDPNEVLSAHKQQQQSR
VSRSDELLIVSNTTELVFPRHPSKEGLGDIGNSEMDLEGIKPHSTIGINPRTHRMTGVIDQQPLIEDQQADEKYDANGKAEPIQLDSEHEKWSRGDRQAR
DWLADDIRPLFIHDRGADSFAFYEGVTREMENAGFIIRASQNRRIWTDDGEPGKLFDWSSDLAEQGRKTIEIQQGGGREARTAELSIATGTCELRAPKNN
PEQEGSIEVNVVRVDEVGEDDDPIQWVLLTTESVEEFEETLTLIDYYGLRWRIEDWHKVLKSGCNIEERQLQIWERMEVLLSMYSVIAWKVLELRELARD
DSSVSPAVLLSEAERTILETKFPELSGQDGKSYAVSVAKLGGYLDRGSDPPPGWETMWKGLRKLRMWAEGYELGAE
VSRSDELLIVSNTTELVFPRHPSKEGLGDIGNSEMDLEGIKPHSTIGINPRTHRMTGVIDQQPLIEDQQADEKYDANGKAEPIQLDSEHEKWSRGDRQAR
DWLADDIRPLFIHDRGADSFAFYEGVTREMENAGFIIRASQNRRIWTDDGEPGKLFDWSSDLAEQGRKTIEIQQGGGREARTAELSIATGTCELRAPKNN
PEQEGSIEVNVVRVDEVGEDDDPIQWVLLTTESVEEFEETLTLIDYYGLRWRIEDWHKVLKSGCNIEERQLQIWERMEVLLSMYSVIAWKVLELRELARD
DSSVSPAVLLSEAERTILETKFPELSGQDGKSYAVSVAKLGGYLDRGSDPPPGWETMWKGLRKLRMWAEGYELGAE
Blast result :
Comments
ISHwa2 is 50% aa similar to ISLpn5.
References
1] ISfinder annotation (2009)
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M., Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169.
3] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M., Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169.
3] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968