ISHwa2

  • Family IS4
  • Group IS50
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM180088 ND Haloquadratum walsbyi
Haloquadratum walsbyi DSM 16790
DNA section
IS Length : 1668 bp

Ends


IR Length : 24/31

IRL : CTGTCTCTTACCCACAAGTCCTAATGGAAGAGTAGACGAACCAAGATTGG
IRR : CTGTCTCTTACCCATAACTCAATACTAGAGGGTAATTTCAACCAAATCAG

Insertion site


Left flankDirect repeatRight flankDR Length
AGAACTCCCAGTTTTGATGCGGGGATGAGT10

DNA sequence

CTGTCTCTTACCCACAAGTCCTAATGGAAGAGTAGACGAACCAAGATTGGTAGATGGGGCGTCGCTCACGGAGTTGGAAGCCAGAACTCGATGAAGATGG
GCAGCTGTGTGACATGGATGTTTCAGGATGGATTCAAACGGAGTTTCGATCAGCCGAGTTTGGAGACAAGCGCCTGAGTGACCGACTAGTACAACTTGGG
GATGAACTCGGCATCGGCAGCTCGCCTGCCGAGTCCATCCCTGCTGCCTGCGGAGACTGGGCGTCCACAAAAGCTACATACCGATTTTGCGATAATGAGA
GTGTGGATCCCAACGAGGTTCTCTCTGCTCACAAGCAGCAACAGCAATCAAGAGTGAGTCGGTCAGACGAACTCCTGATTGTCTCCAATACCACCGAACT
CGTGTTTCCGAGACACCCCTCCAAGGAGGGTCTCGGCGATATTGGCAACTCTGAAATGGATCTCGAAGGTATCAAGCCTCACTCCACGATCGGAATCAAT
CCACGGACCCATCGAATGACTGGGGTCATCGATCAGCAGCCGCTGATCGAGGACCAGCAGGCCGATGAGAAGTACGATGCCAACGGCAAAGCAGAGCCGA
TTCAACTTGACAGTGAACATGAGAAATGGAGCCGTGGCGACAGGCAAGCCAGAGACTGGCTTGCCGACGATATCCGCCCGCTATTTATCCATGACCGAGG
CGCAGATTCATTCGCGTTCTACGAGGGAGTCACCAGAGAGATGGAAAATGCTGGCTTCATCATCCGAGCGAGTCAAAACCGACGGATTTGGACTGATGAT
GGTGAACCTGGAAAACTCTTTGACTGGAGCAGCGACCTTGCCGAGCAAGGTCGCAAAACAATCGAGATTCAACAGGGAGGTGGGCGCGAAGCGAGAACAG
CGGAGTTGTCGATAGCCACTGGAACGTGTGAGTTGCGCGCGCCAAAGAATAATCCTGAACAAGAGGGTTCAATCGAGGTGAATGTCGTGAGAGTTGACGA
GGTCGGTGAAGATGACGACCCGATTCAGTGGGTGTTGCTCACCACTGAATCGGTCGAAGAGTTTGAGGAAACGCTGACACTCATCGACTATTACGGTCTC
CGCTGGCGAATTGAAGACTGGCATAAAGTGCTCAAGAGTGGCTGTAACATCGAAGAACGGCAACTGCAGATTTGGGAGCGGATGGAAGTGTTGTTGAGCA
TGTATTCAGTGATCGCGTGGAAAGTTCTGGAGCTACGAGAACTTGCTCGTGATGACAGTTCAGTATCTCCGGCGGTCCTGCTGAGTGAGGCAGAGCGCAC
AATTCTGGAAACGAAATTTCCAGAATTGAGCGGTCAAGATGGGAAATCATACGCAGTGAGCGTGGCTAAACTCGGCGGTTATCTTGATCGTGGCTCAGAT
CCGCCACCAGGGTGGGAGACGATGTGGAAAGGACTCCGGAAGCTACGCATGTGGGCTGAAGGATACGAACTCGGTGCTGAATGAGCCCCGAAGCGGGCTC
ATTTAGCAGAACCCGCCGAAATAACGAGTTCAACTGAACTTTTCAAGCGGCTTCATGGATACTTCTCTAATCTTGGGCAGATACTGATGGAAATTTGATT
GATTTCTTCTTTTCATGCCTGATTTGGTTGAAATTACCCTCTAGTATTGAGTTATGGGTAAGAGACAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1431 bp476 aa541484+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGRRSRSWKPELDEDGQLCDMDVSGWIQTEFRSAEFGDKRLSDRLVQLGDELGIGSSPAESIPAACGDWASTKATYRFCDNESVDPNEVLSAHKQQQQSR
VSRSDELLIVSNTTELVFPRHPSKEGLGDIGNSEMDLEGIKPHSTIGINPRTHRMTGVIDQQPLIEDQQADEKYDANGKAEPIQLDSEHEKWSRGDRQAR
DWLADDIRPLFIHDRGADSFAFYEGVTREMENAGFIIRASQNRRIWTDDGEPGKLFDWSSDLAEQGRKTIEIQQGGGREARTAELSIATGTCELRAPKNN
PEQEGSIEVNVVRVDEVGEDDDPIQWVLLTTESVEEFEETLTLIDYYGLRWRIEDWHKVLKSGCNIEERQLQIWERMEVLLSMYSVIAWKVLELRELARD
DSSVSPAVLLSEAERTILETKFPELSGQDGKSYAVSVAKLGGYLDRGSDPPPGWETMWKGLRKLRMWAEGYELGAE

 

Blast result :
Comments
ISHwa2 is 50% aa similar to ISLpn5.
References
1] ISfinder annotation (2009)
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M., Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169.
3] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968