ISMtsp6
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 1495 bp
Ends
IR Length : 9/17
IRL : taagacCGTATGTCCGCCGAGCCGGGGTGGCTCGCCCTACACTGCGCCTT
IRR : ---gctCTGATGTCCGCAGTCAACTACCGGGACGAGCGAGATCGTTCGCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGGCTGGTAC | GTCAGATTAG | 0 | |
| CGGCCGTAGG | TCTGTTCCGG | 0 |
DNA sequence
TAAGACCGTATGTCCGCCGAGCCGGGGTGGCTCGCCCTACACTGCGCCTTCGAGGGTTGCTCGGCGCGGCCGAGCCGATCCTCATCGCAGGAGGACGAGC
CGTGGGCCATGCTACCGAGGTTTTCGTCGGGATCGACGTGTCCAAGATGCGCAATGCCGTCGCCGTTGCTGATGGCGAGCGTGGAGGCGAGGTCCGCTAC
CTGGGTGAGGTCGACGCCTCGCCCGAGAGCATGCGCCGGCTGGTGAGGCGCCTGGCAGGCCAGCACGAGCGCCTGCACTTCTGCTACGAGGCGGGGCCGA
CGGGCTACGGTCTCCACCGCCTCATCACCGAACTCGGCCACTCCTGCTCCGTCGTGGCGCCCTCTCTGATCCCCAGGAAGCCCGGCGACCGGGTCAAGAC
CAACCGCCGCGATGCGGTGGCGCTCGCCAAGCTCCTGCGCGCCGGCGAGCTCACGGCCGTCTGGGTGCCCGACGAAGGCCATGAGGCGATGCGCGATCTC
GTGCGCGCCCGGGCCGCTGCCGTCGAGAGCCTGCGCGTGCATCGCCAGCAGGTCAGTGCCTTCATGCTCAAGCACGGGCGCGTCTATCCCCGCAAGAAGG
GCTGGACGATGCGCTATCTTTGCTGGCTGCAGGAGCAGCGCTTCGACCATCCCGCCCACCAGATCGCGCTGCAGGAGCTGGTCGAGGCGGTGCGGATCGC
CAAGGAGCGCGTGGCGCGTATCGAGGCGGCCATCGCTGAGTTCGTGCCCACCTGGTCGCTCGGTCCGGTCGTGCGGGCGTTGCAGACCCTGCGCGGCATC
GACCTCATCGTCGCTGTCACCTTCGCGACCGAGGTCGGCGACATCAGCCGCTTCGAGAGTCCGCGTCAGCTCATGGGATATCTCGGCCTCGTACCGAGCG
AGCGGTCCACCGGCGACACGGTCCGGCGCGGCGGGATCACCAAGGCCGGCAATGGGCGCGTGCGGCACATGCTGGTGGAGAGCGCCTGGACCTACCGTCA
CCCGCCGAAGGTCGGAGCAAAGAAGCTCTACCGGATGGAAGCCGCGACGCCACGGGTGCGCGAGATCGCCTGGAAGGCCCAGACCCGCCTCACGGCTCGT
TACCGGGCGCTGATCGGGCGCGGCAAGAAGGCGACGGTGGTCTGCACGGCGATCGCCCGCGAACTCGTCGGCTTCATGTGGTCGGTCGCCCGGGAGGCGC
GGGTCGCCTGAGGCGGCCACCAAGCGGGACGCTTCCTCGCGCATCGGCGGGGGCGGGACCACGGCAGGAGAACGCCCGTCAGACGCTTTGTGGCCGGCCG
TGAGGCCGACGCCCGCTGTAAGATCGGGACAGCTCCGGACGCACACTCGGGACTGCGGTAGCCAACCCGCGCATCAGAGCTTGATCACCGACGTCCATCG
GTCCCGTCTCCACCCATGCGCGTACATCCTCACTGCGCCGCTCCTCAGAGCGAACGATCTCGCTCGTCCCGGTAGTTGACTGCGGACATCAGAGC
CGTGGGCCATGCTACCGAGGTTTTCGTCGGGATCGACGTGTCCAAGATGCGCAATGCCGTCGCCGTTGCTGATGGCGAGCGTGGAGGCGAGGTCCGCTAC
CTGGGTGAGGTCGACGCCTCGCCCGAGAGCATGCGCCGGCTGGTGAGGCGCCTGGCAGGCCAGCACGAGCGCCTGCACTTCTGCTACGAGGCGGGGCCGA
CGGGCTACGGTCTCCACCGCCTCATCACCGAACTCGGCCACTCCTGCTCCGTCGTGGCGCCCTCTCTGATCCCCAGGAAGCCCGGCGACCGGGTCAAGAC
CAACCGCCGCGATGCGGTGGCGCTCGCCAAGCTCCTGCGCGCCGGCGAGCTCACGGCCGTCTGGGTGCCCGACGAAGGCCATGAGGCGATGCGCGATCTC
GTGCGCGCCCGGGCCGCTGCCGTCGAGAGCCTGCGCGTGCATCGCCAGCAGGTCAGTGCCTTCATGCTCAAGCACGGGCGCGTCTATCCCCGCAAGAAGG
GCTGGACGATGCGCTATCTTTGCTGGCTGCAGGAGCAGCGCTTCGACCATCCCGCCCACCAGATCGCGCTGCAGGAGCTGGTCGAGGCGGTGCGGATCGC
CAAGGAGCGCGTGGCGCGTATCGAGGCGGCCATCGCTGAGTTCGTGCCCACCTGGTCGCTCGGTCCGGTCGTGCGGGCGTTGCAGACCCTGCGCGGCATC
GACCTCATCGTCGCTGTCACCTTCGCGACCGAGGTCGGCGACATCAGCCGCTTCGAGAGTCCGCGTCAGCTCATGGGATATCTCGGCCTCGTACCGAGCG
AGCGGTCCACCGGCGACACGGTCCGGCGCGGCGGGATCACCAAGGCCGGCAATGGGCGCGTGCGGCACATGCTGGTGGAGAGCGCCTGGACCTACCGTCA
CCCGCCGAAGGTCGGAGCAAAGAAGCTCTACCGGATGGAAGCCGCGACGCCACGGGTGCGCGAGATCGCCTGGAAGGCCCAGACCCGCCTCACGGCTCGT
TACCGGGCGCTGATCGGGCGCGGCAAGAAGGCGACGGTGGTCTGCACGGCGATCGCCCGCGAACTCGTCGGCTTCATGTGGTCGGTCGCCCGGGAGGCGC
GGGTCGCCTGAGGCGGCCACCAAGCGGGACGCTTCCTCGCGCATCGGCGGGGGCGGGACCACGGCAGGAGAACGCCCGTCAGACGCTTTGTGGCCGGCCG
TGAGGCCGACGCCCGCTGTAAGATCGGGACAGCTCCGGACGCACACTCGGGACTGCGGTAGCCAACCCGCGCATCAGAGCTTGATCACCGACGTCCATCG
GTCCCGTCTCCACCCATGCGCGTACATCCTCACTGCGCCGCTCCTCAGAGCGAACGATCTCGCTCGTCCCGGTAGTTGACTGCGGACATCAGAGC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1110 bp | 369 aa | 102 | 1211 | + | No |
Chemistry : DEDD
ORF sequence :
VGHATEVFVGIDVSKMRNAVAVADGERGGEVRYLGEVDASPESMRRLVRRLAGQHERLHFCYEAGPTGYGLHRLITELGHSCSVVAPSLIPRKPGDRVKT
NRRDAVALAKLLRAGELTAVWVPDEGHEAMRDLVRARAAAVESLRVHRQQVSAFMLKHGRVYPRKKGWTMRYLCWLQEQRFDHPAHQIALQELVEAVRIA
KERVARIEAAIAEFVPTWSLGPVVRALQTLRGIDLIVAVTFATEVGDISRFESPRQLMGYLGLVPSERSTGDTVRRGGITKAGNGRVRHMLVESAWTYRH
PPKVGAKKLYRMEAATPRVREIAWKAQTRLTARYRALIGRGKKATVVCTAIARELVGFMWSVAREARVA
NRRDAVALAKLLRAGELTAVWVPDEGHEAMRDLVRARAAAVESLRVHRQQVSAFMLKHGRVYPRKKGWTMRYLCWLQEQRFDHPAHQIALQELVEAVRIA
KERVARIEAAIAEFVPTWSLGPVVRALQTLRGIDLIVAVTFATEVGDISRFESPRQLMGYLGLVPSERSTGDTVRRGGITKAGNGRVRHMLVESAWTYRH
PPKVGAKKLYRMEAATPRVREIAWKAQTRLTARYRALIGRGKKATVVCTAIARELVGFMWSVAREARVA
Blast result :
Comments
ISMtsp6 is 69% aa similar to ISSfr2.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.