ISMno5

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011894 ND Methylobacterium nodulans
Methylobacterium nodulans ORS 2060
Methylobacterium nodulans ORS 2060 plasmid pMNOD02
Methylobacterium nodulans ORS 2060 plasmid pMNOD01
DNA section
IS Length : 1728 bp

Ends


IR Length : 23

IRL : GGTTCTTCCGCACTTTGCGTGGAACGGTCGCGGTGACGCGGGAAGCGCAG
IRR : GGTTCTTCCGCACTTTGCGTGGATCAGGCAGCGATGAGGATGCGGCTACG

Insertion site


Left flankDirect repeatRight flankDR Length
GGATTGCCCCGTTTTTGTGGACGGTTAG8
CTCACGGTCCAAGAAATGGGGTCTGGTT8
AGAGCTCTCCACTTTTCCGGGTTAAGTC8
AAAGGTGTCCACTTCTCCTGAACAGACT8
CGGTTTTCGTACCAATCCGG0
CCGGATTGGTACGAAAACCG0

DNA sequence

GGTTCTTCCGCACTTTGCGTGGAACGGTCGCGGTGACGCGGGAAGCGCAGGCTGATTCACGAGGCGGATGATCCTGTCCTCATCCCTGCCGGGCTGCACG
ATCGAGCGGGTCTTTCGCCACACCGATCACCTTGTCGTCATCGCCCATGGCCGCCGTTGTCATGGTCGATGTCCGACCTGTGGCACGCCCAGTTCCGCCG
TTCACAGCCGCTATGATCGCCGTCCGGCCGATCTGCCGAGCATGGGCCAGCCTGTGACGCTGCGCCTGCGTATCCGACGCTTCTACTGCCATCATCCCGC
TTGCCGCCGCCGCACGTTCGCCGAGCCTCTTCCGCGGCTGATACCGCCGCGAGCGCGCCGGACCCGCCGCCTCGCTCAGGCCCAGACCCGGATCGGGCTT
GCAGTCGGCGGCGAGGCCGGCGCGCGCCTGACCGGCCACCTGGGGATGCAAACCAGCCCCGACACGATCCTGCGCCTCGTGCACCGCCTCCCGTTGCCGA
GAGCGAACGCGCCGCGCGCCGTGGGCATCGACGACTGGGCCATCCGCAAAGGTCGGAGCTACGGCACGCTTCTCGTCGACCTCGAACGGCGATGCCCGAT
CGACCTGCTGCCCGACCGCTCAGGGGCGACCGTTGCCGCATGGCTGCGTCGCCATCCCAGCATCCAGATCGTCGCCCGCGACCGCTCGACCGAGTACGCC
CGAGCGGCCACCGCGGGCGCGCCGGCCGCCCTCCAGGTCGCCGACCGATGGCACCTGCTCCTCAACCTGCGCCAGGTTCTCGAACGCTGGCTTGGCCGCG
TCCATGGCCGGCTGCGACAGCTCCCTCCTCTTGCGAGTGGTGACGGACGACAGCCAGGGGAGCGCCCGCGCGCCTATCGCCGCAGCGCAGCCGAGATTGC
CGTCAGCCTCGACAGCCGCGCCCGCCGGCTGGCGGCCTATGAGGACGTGCGCCGACGCCATCTCGCTGGCGAGACCCTCCTGGCGATCGGCCGCGCCACG
GGTCTGGCGCGAGCGACCGTGCGCAAGTACGCCCAGGCCGAGAGCTTCCCGGAGCGCGCGATCCGCAGACCCAATCCCTCTCGCCTCGATCCCTACCTCG
CCCATCTGGAGCAGCGCATGGCCGAGGGCTGCGAGAACGCTATGGCGCTCTGGCGCGAGATCCGCCGCCAGGGCTTCGCGGGAACCCATCGGCAGGTGCA
CCGCTTCGTCGCCGAGCGGCGCACGGCTCGCAAATGGCTGTCGCAGCCCGCCTCGACGAGCACTGAGGCGATCAGACCCTCACCCATCGCCTCACCCAAG
CAACTGGCCTGGATCCTGGTGCAGCCCCTCGCGACACTGCAGCCCCGCGCCGCGGCTGACCTCGCCCGCATCCGGCAGGATCCTGAAGCCGCACGGATCG
CCGATCTGGCGCGGCGGTTCACGATGCTCGTGCGTGCCTGTGGCCTGGGCGGCGACCGGCCGGCGGACCCTGCCAGCGAGCTCGACAGATGGCTGCTCGA
AACCCGGAACTGCGGTGTCGCTGCGCTGGAGACCTTCGCGGCCGGTTTGGCGCAGGATGGGGCGGCCGTTCGGGCGGCGCTGACGACGTCCTGGAGCAAT
GCTCAGGCGGAAGGGCAGATCAGTCGGCTGAAGATGCTCAAGCGCACCATGTACGGTCGCGCCAGCTTCGCACTCCTCCGTAGCCGCATCCTCATCGCTG
CCTGATCCACGCAAAGTGCGGAAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1638 bp545 aa681705+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MILSSSLPGCTIERVFRHTDHLVVIAHGRRCHGRCPTCGTPSSAVHSRYDRRPADLPSMGQPVTLRLRIRRFYCHHPACRRRTFAEPLPRLIPPRARRTR
RLAQAQTRIGLAVGGEAGARLTGHLGMQTSPDTILRLVHRLPLPRANAPRAVGIDDWAIRKGRSYGTLLVDLERRCPIDLLPDRSGATVAAWLRRHPSIQ
IVARDRSTEYARAATAGAPAALQVADRWHLLLNLRQVLERWLGRVHGRLRQLPPLASGDGRQPGERPRAYRRSAAEIAVSLDSRARRLAAYEDVRRRHLA
GETLLAIGRATGLARATVRKYAQAESFPERAIRRPNPSRLDPYLAHLEQRMAEGCENAMALWREIRRQGFAGTHRQVHRFVAERRTARKWLSQPASTSTE
AIRPSPIASPKQLAWILVQPLATLQPRAAADLARIRQDPEAARIADLARRFTMLVRACGLGGDRPADPASELDRWLLETRNCGVAALETFAAGLAQDGAA
VRAALTTSWSNAQAEGQISRLKMLKRTMYGRASFALLRSRILIAA

 

Blast result :
Comments
ISMno5 is 67% aa similar to ISMex10.
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.