ISShwo4

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010506 ND Shewanella woodyi
Shewanella woodyi MS-32
DNA section
IS Length : 1313 bp

Ends


IR Length : 19/24

IRL : GGCTCTTCGTCGAAAGTGGTGGAAGACGTAACTTTTAATATAAACTCCTC
IRR : GGCTCTTCGCTGTTAATGGTGGAACTCCATATCCAACTTCCCAAAGTGGA

Insertion site


Left flankDirect repeatRight flankDR Length
CGAATACTGTATTTATAt/cAGTTATAACT8
CAAGGGCTGTGCATACATACAGTTATAA8

DNA sequence

GGCTCTTCGTCGAAAGTGGTGGAAGACGTAACTTTTAATATAAACTCCTCAATACAATTCCACTTTTTACCACCGTCATGAGCGATACGCTTTTATACCA
AAAGGTATTAGGTTTAGAAGTCCCTTGGTTAGTCTCTAATGTTCAACTTGATGAAGAACTTCAACGTATTACCGTTGTTGTGGACTATGTTCATAACGGT
GATCTCGTTTGTCCTGTCTGCCAGCAAGCTGGCCGACATTATGATTCTCGTCCTCGAACTTGGCGTCATTTAGATACTTGTCAATTTGAAACCCTAATCC
ACTCAAAAGTGCCTCGAGTTCACTGCCCTGAACATGGCTATCAGACACTACAAGTCCCTTGGGCACATGAAAGTAGTCGGTACACTGAATTGCTAGAAAT
GAGGGTACTGAAGATGCTAGCAATGAGTACGTTAAATGCTGTGAGTAAATTCTTTAAACTCAGTTGGGGAGCCATTGACCGAATAATGGAACGAGCGGTC
GCGAGAGGGCTCGCACATCGTACAACTTACTCAACTGAAGCATTGTTAATTGATGAAACAGCGATTAAAAAAGGGCGTGACTATGTCACTGTTCTATCCA
ACTCTCAAGGCCAAGTATTAGCCGTTGCAGATGGTCGTTCTAAGGCCAGTTTTAACGCTTGCTTTGAGCAATTACCTTCATACACGACTTCGCTAACCAA
GACCATCTGTATGGACATGAGCCCTGCTTATATTTCAGCAGCAAAAGCAGCATTTCCTGACGCTGAAAAGCGGATTGCATTTGACCATTTCCATATTGCT
AAATTACTGACTGAAGCTGTCAATGCCATACGAAGAGATGAAATATACAGGCTGTCTCCCTCAATGAGACAAGAGGCTCATCGCACACGTTTCTTTTGGC
TTAAACGAAGGCACAACTTACCTGCCCATAGCCAAGAGAGACTTAATAAATTAGTGCCTTCATTAATGGATACAGCCCTTGCTTGGTACTTTAAAGAGCA
AGCTCGTGACATTTGGTATAGCAACAGCGTTCGGGGCACTAAACAGAGATGGCTAGAATGGATAGCTTTAATTAAGGCAACTAATATCAAGCCTTTAATG
TCCGTAGCTGAAACAGTTGAGTCTAAATTATGGGGCATACTTAATGCGATGCGTTTTGGTGTTTCAAATGGTCTAGCAGAAGCTATCAATAGTCAAATAA
GGCTGCTGAGAGTAAAAGCCATGGGGTATAGAAATACAGAGCGATTTAAGCGAGCAATACTGTTCCACTTTGGGAAGTTGGATATGGAGTTCCACCATTA
ACAGCGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa781301+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSDTLLYQKVLGLEVPWLVSNVQLDEELQRITVVVDYVHNGDLVCPVCQQAGRHYDSRPRTWRHLDTCQFETLIHSKVPRVHCPEHGYQTLQVPWAHESS
RYTELLEMRVLKMLAMSTLNAVSKFFKLSWGAIDRIMERAVARGLAHRTTYSTEALLIDETAIKKGRDYVTVLSNSQGQVLAVADGRSKASFNACFEQLP
SYTTSLTKTICMDMSPAYISAAKAAFPDAEKRIAFDHFHIAKLLTEAVNAIRRDEIYRLSPSMRQEAHRTRFFWLKRRHNLPAHSQERLNKLVPSLMDTA
LAWYFKEQARDIWYSNSVRGTKQRWLEWIALIKATNIKPLMSVAETVESKLWGILNAMRFGVSNGLAEAINSQIRLLRVKAMGYRNTERFKRAILFHFGK
LDMEFHH

 

Blast result :
Comments
The ISShwo4 transposase has 70% identity to ISShes3_aa1. There are 2 full length copies of ISShwo4 encoded in Shewanella woodyi MS-32.
References
1] Romine, M. (2009) Direct submission