ISShwo4
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010506 | ND | Shewanella woodyi | Shewanella woodyi MS-32 |
DNA section
IS Length : 1313 bp
Ends
IR Length : 19/24
IRL : GGCTCTTCGTCGAAAGTGGTGGAAGACGTAACTTTTAATATAAACTCCTC
IRR : GGCTCTTCGCTGTTAATGGTGGAACTCCATATCCAACTTCCCAAAGTGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAATACTGT | ATTTATAt/c | AGTTATAACT | 8 |
CAAGGGCTGT | GCATACAT | ACAGTTATAA | 8 |
DNA sequence
GGCTCTTCGTCGAAAGTGGTGGAAGACGTAACTTTTAATATAAACTCCTCAATACAATTCCACTTTTTACCACCGTCATGAGCGATACGCTTTTATACCA
AAAGGTATTAGGTTTAGAAGTCCCTTGGTTAGTCTCTAATGTTCAACTTGATGAAGAACTTCAACGTATTACCGTTGTTGTGGACTATGTTCATAACGGT
GATCTCGTTTGTCCTGTCTGCCAGCAAGCTGGCCGACATTATGATTCTCGTCCTCGAACTTGGCGTCATTTAGATACTTGTCAATTTGAAACCCTAATCC
ACTCAAAAGTGCCTCGAGTTCACTGCCCTGAACATGGCTATCAGACACTACAAGTCCCTTGGGCACATGAAAGTAGTCGGTACACTGAATTGCTAGAAAT
GAGGGTACTGAAGATGCTAGCAATGAGTACGTTAAATGCTGTGAGTAAATTCTTTAAACTCAGTTGGGGAGCCATTGACCGAATAATGGAACGAGCGGTC
GCGAGAGGGCTCGCACATCGTACAACTTACTCAACTGAAGCATTGTTAATTGATGAAACAGCGATTAAAAAAGGGCGTGACTATGTCACTGTTCTATCCA
ACTCTCAAGGCCAAGTATTAGCCGTTGCAGATGGTCGTTCTAAGGCCAGTTTTAACGCTTGCTTTGAGCAATTACCTTCATACACGACTTCGCTAACCAA
GACCATCTGTATGGACATGAGCCCTGCTTATATTTCAGCAGCAAAAGCAGCATTTCCTGACGCTGAAAAGCGGATTGCATTTGACCATTTCCATATTGCT
AAATTACTGACTGAAGCTGTCAATGCCATACGAAGAGATGAAATATACAGGCTGTCTCCCTCAATGAGACAAGAGGCTCATCGCACACGTTTCTTTTGGC
TTAAACGAAGGCACAACTTACCTGCCCATAGCCAAGAGAGACTTAATAAATTAGTGCCTTCATTAATGGATACAGCCCTTGCTTGGTACTTTAAAGAGCA
AGCTCGTGACATTTGGTATAGCAACAGCGTTCGGGGCACTAAACAGAGATGGCTAGAATGGATAGCTTTAATTAAGGCAACTAATATCAAGCCTTTAATG
TCCGTAGCTGAAACAGTTGAGTCTAAATTATGGGGCATACTTAATGCGATGCGTTTTGGTGTTTCAAATGGTCTAGCAGAAGCTATCAATAGTCAAATAA
GGCTGCTGAGAGTAAAAGCCATGGGGTATAGAAATACAGAGCGATTTAAGCGAGCAATACTGTTCCACTTTGGGAAGTTGGATATGGAGTTCCACCATTA
ACAGCGAAGAGCC
AAAGGTATTAGGTTTAGAAGTCCCTTGGTTAGTCTCTAATGTTCAACTTGATGAAGAACTTCAACGTATTACCGTTGTTGTGGACTATGTTCATAACGGT
GATCTCGTTTGTCCTGTCTGCCAGCAAGCTGGCCGACATTATGATTCTCGTCCTCGAACTTGGCGTCATTTAGATACTTGTCAATTTGAAACCCTAATCC
ACTCAAAAGTGCCTCGAGTTCACTGCCCTGAACATGGCTATCAGACACTACAAGTCCCTTGGGCACATGAAAGTAGTCGGTACACTGAATTGCTAGAAAT
GAGGGTACTGAAGATGCTAGCAATGAGTACGTTAAATGCTGTGAGTAAATTCTTTAAACTCAGTTGGGGAGCCATTGACCGAATAATGGAACGAGCGGTC
GCGAGAGGGCTCGCACATCGTACAACTTACTCAACTGAAGCATTGTTAATTGATGAAACAGCGATTAAAAAAGGGCGTGACTATGTCACTGTTCTATCCA
ACTCTCAAGGCCAAGTATTAGCCGTTGCAGATGGTCGTTCTAAGGCCAGTTTTAACGCTTGCTTTGAGCAATTACCTTCATACACGACTTCGCTAACCAA
GACCATCTGTATGGACATGAGCCCTGCTTATATTTCAGCAGCAAAAGCAGCATTTCCTGACGCTGAAAAGCGGATTGCATTTGACCATTTCCATATTGCT
AAATTACTGACTGAAGCTGTCAATGCCATACGAAGAGATGAAATATACAGGCTGTCTCCCTCAATGAGACAAGAGGCTCATCGCACACGTTTCTTTTGGC
TTAAACGAAGGCACAACTTACCTGCCCATAGCCAAGAGAGACTTAATAAATTAGTGCCTTCATTAATGGATACAGCCCTTGCTTGGTACTTTAAAGAGCA
AGCTCGTGACATTTGGTATAGCAACAGCGTTCGGGGCACTAAACAGAGATGGCTAGAATGGATAGCTTTAATTAAGGCAACTAATATCAAGCCTTTAATG
TCCGTAGCTGAAACAGTTGAGTCTAAATTATGGGGCATACTTAATGCGATGCGTTTTGGTGTTTCAAATGGTCTAGCAGAAGCTATCAATAGTCAAATAA
GGCTGCTGAGAGTAAAAGCCATGGGGTATAGAAATACAGAGCGATTTAAGCGAGCAATACTGTTCCACTTTGGGAAGTTGGATATGGAGTTCCACCATTA
ACAGCGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 78 | 1301 | + | No |
Chemistry : Unknow
ORF sequence :
MSDTLLYQKVLGLEVPWLVSNVQLDEELQRITVVVDYVHNGDLVCPVCQQAGRHYDSRPRTWRHLDTCQFETLIHSKVPRVHCPEHGYQTLQVPWAHESS
RYTELLEMRVLKMLAMSTLNAVSKFFKLSWGAIDRIMERAVARGLAHRTTYSTEALLIDETAIKKGRDYVTVLSNSQGQVLAVADGRSKASFNACFEQLP
SYTTSLTKTICMDMSPAYISAAKAAFPDAEKRIAFDHFHIAKLLTEAVNAIRRDEIYRLSPSMRQEAHRTRFFWLKRRHNLPAHSQERLNKLVPSLMDTA
LAWYFKEQARDIWYSNSVRGTKQRWLEWIALIKATNIKPLMSVAETVESKLWGILNAMRFGVSNGLAEAINSQIRLLRVKAMGYRNTERFKRAILFHFGK
LDMEFHH
RYTELLEMRVLKMLAMSTLNAVSKFFKLSWGAIDRIMERAVARGLAHRTTYSTEALLIDETAIKKGRDYVTVLSNSQGQVLAVADGRSKASFNACFEQLP
SYTTSLTKTICMDMSPAYISAAKAAFPDAEKRIAFDHFHIAKLLTEAVNAIRRDEIYRLSPSMRQEAHRTRFFWLKRRHNLPAHSQERLNKLVPSLMDTA
LAWYFKEQARDIWYSNSVRGTKQRWLEWIALIKATNIKPLMSVAETVESKLWGILNAMRFGVSNGLAEAINSQIRLLRVKAMGYRNTERFKRAILFHFGK
LDMEFHH
Blast result :
Comments
The ISShwo4 transposase has 70% identity to ISShes3_aa1. There are 2 full length copies of ISShwo4 encoded in Shewanella woodyi MS-32.
References
1] Romine, M. (2009) Direct submission