ISShwo5

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010506 ND Shewanella woodyi
Shewanella woodyi MS-32
DNA section
IS Length : 1611 bp

Ends


IR Length : 14/31

IRL : CTTGATAATCATTGAGCCTCCTCCCTAGCAAACCGCATTAGCAGTATGCT
IRR : -----ACACATATGAGCCTCCCGCCAGTCAATAGGCGAGCTTAACTAGTT

Insertion site


Left flankDirect repeatRight flankDR Length
TGTTTAACAGTATGTAACGG0
TATTAATTAGTAGCTGCCTT0

DNA sequence

CTTGATAATCATTGAGCCTCCTCCCTAGCAAACCGCATTAGCAGTATGCTGAAGGTGACGAAACCAACAGGAGAAAGCTCAATGAGATTTTATAATAACT
CACATCCATACTACTGTGGAATTGATTTACATGCGCGCTTACTTTATGTCTGCATTATTGATTCTAAAGGGAAAGTTGCTGTACATAAAAAGATTGATGC
AGACAAAGGTGACCTGTTGCGCATACTTGAACCATATATAGGTAATGTCATAGTCGGCGTTGAGTGCATGCACTGCTGGTATTGGGTCTCTGATTGGTGT
GCTGAACTTGGCATCGACTTTGTCTTAGGCCATGCCCTGTATATGAAGGCTATTCACGGAGGTAAAACCAAAAACGATAAAATCGACTCCTTTAAAATAG
CGTCGCTACTTCGTGGTGGTAACTTCCCAATCGCTTACAACTACCCTAACGAAATGCGTGCTGCCCGCGACCTACTACGTCGCAGAATGAAGATAGTCCG
TCACGGTGCCATGCTCAAAGCTCATGTTGTTAATACAAACAGCCAGTACAACTTACCTGCGACAGAGTTAAATCTTAAAAACATTTCCGCAAGACAAAAA
TTACGTCAACAATATAAAGACCCTATCGTACAGCGAAATATAGACTTAGACATGGCACTTCTCGATTGCTATGCCAAGGAACTCGCTCAGGTTGAATGGT
TTATTGAGAAACAAGCCAAAAACCATAATCCCGTTTATCTTGAATTACTTAAAACCGTTCCAGGTATTGGTAAGATTTTATCGCTGACTATCCTTTATGA
AATCGGTGATGTCACTCGGTTTGAATCAGTTCAAAAATTTGCCTCATACTCTCGTTTAGTGAAATGCAAAGCTGAGTCAGCTGGTAAAACCTACGGCACC
AACGGCAATAAAATCGGTAATGCGCACTTGAAATGGGCGTTCTCTGAAGCGGCAGTGCTTTACCTTCGTGGTAATGATAAAGCGCGTAACTATCTTAACC
GATTACAAAAACGGATGAGCAAAGCCAAAGCACTATCTGCGCTAGCTCATAAGCTTGGACGTTGTGTCTACTTCATGCTGAAAAACAAAACGGTGTTTGA
TGAACAACGATTTTTGAAAGGATAAGTCGCGCAATAAGGTGAGCTGAACGTCTAACTAGATACTCTTAAAAAGAGAAGCGAGCATGACTGTGAATGATGT
GGCTAATGAAATAATAATTTCTCACCATCATCACTATGCCAAGTGCGACTTAAGCTACATAGACTTGATTAGACACCTTATTGGCGCGCATTAATTAATA
CAATCAACAAAGTCGTTTACCCCCTAAATGAGCCTGAAACTAACTGTGCTATAAGCACCTGAGACTTGAATAGTGCCATCTTAGGGTTAACCGATAACTG
TCTAGTGCCCCTGATATTCCAAAGGATTGGACTGCGTCAGGCTGCGATAAGATCGTAATAAGAGAGCCTCTATATGTGTTTGCTGTAAACGATGATTTGA
CAGCGCACCGACATGCGAAGTGGATGAATTTGTTGATTGATTTAAATTTGACTGCACAAGCAGCCAAACTAGTTAAGCTCGCCTATTGACTGGCGGGAGG
CTCATATGTGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa821125+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MRFYNNSHPYYCGIDLHARLLYVCIIDSKGKVAVHKKIDADKGDLLRILEPYIGNVIVGVECMHCWYWVSDWCAELGIDFVLGHALYMKAIHGGKTKNDK
IDSFKIASLLRGGNFPIAYNYPNEMRAARDLLRRRMKIVRHGAMLKAHVVNTNSQYNLPATELNLKNISARQKLRQQYKDPIVQRNIDLDMALLDCYAKE
LAQVEWFIEKQAKNHNPVYLELLKTVPGIGKILSLTILYEIGDVTRFESVQKFASYSRLVKCKAESAGKTYGTNGNKIGNAHLKWAFSEAAVLYLRGNDK
ARNYLNRLQKRMSKAKALSALAHKLGRCVYFMLKNKTVFDEQRFLKG

 

Blast result :
Comments
The ISShwo5 transposase has 94% identity to ISShfr7_aa1. There are 2 full length copies encoded in the Shewanella woodyii chromosome. The inverted repeats begin at positions 13 and 8 from the left and right end, respectively.
References
1] Romine, M. (2009) Direct submission