ISBth17

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Bacillus thuringiensis
Bacillus thuringiensis subsp. kurstaki YBT-1520
DNA section
IS Length : 1395 bp

Ends


Left end : TATTTTAGCCAAGAAGACTCCTTCCTCAAGGAGCGTGAAGGGTCACAGCCCAGTGAGTAGGTGGGAGATGAATTGGCTTCGAACAAGGGATGGCAGGAAG II struct. : Yes
Right end : CGCAAGGACTGCGGGGTTAGCCTAATCAATTAGAGTTCGATAGAACTCTTTACTTAGGAATCCCTCACTTCTAAACGAAGTGAAAGTGGGGGTAGTTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TTTTTTATTTATTATGTATAAATTAGTCAa

DNA sequence

TATTTTAGCCAAGAAGACTCCTTCCTCAAGGAGCGTGAAGGGTCACAGCCCAGTGAGTAGGTGGGAGATGAATTGGCTTCGAACAAGGGATGGCAGGAAG
CCATCTTAATTGTTCGACATACAGAAAGTGTTACTCGACTACCTATCGAATGTACGTTTGGTGTATAATAGTCATATACCGAAATGGAGGTGAATCAAAT
AATCATGAATAAAGCCTATAAGTTTCGTATCTATCCAAATCAGGCACAAGCAATTCTAATCAACAAAACGATTGGATGTTCTCGCTTTGTATTCAATTAT
TTCCTATCCTTATGGGATCAAGCATACAAAGAGACAGGAAAAGGCTTGACCTATGGTACATGCTCTGCCAAACTACCTGCCATGAAGAAAGAGCTTGTTT
GGCTAAAAGAAGTGGATAGTATTGCGATTCAGTCGTCTGTTCGCAACCTTGCGGATGCTTATACACGCTTTTTCAAAAAACAAAACAGCGCACCGCGCTT
TAAATCTAAGAAGAACAACGTACAATCTTATACTACAAAAAAAACAAATGAAAACATTGCCGTTGTAGGGAACAAAATAAAGTTGCCGAAACTAGGTCTT
GTTCGATTTGCCAAAAGTCGCGAAGTAGAGGGGCGTATTGTAAATGCTACGGTTAGACGGAACCCTTCTGGTAGATATTTTGTGTCACTATTAGTTGAAA
CAGAAGTACAAGAACTTCCGAAAACAAGTTCTTACATTGGAATAGATGTAGGACTAAAAGATTTCGCTATTTTGTCAGATGGAACCCACTATGAAAATCC
GAAGTTTTTCCGATCATTAGAAGATAAGTTGGCGAAAGCACAGCGTGTGCTTTCTAGAAGAATGAAAGGATCTTCTCGCTGGAATAAACAACGAGTAAAG
GTAGCTAGAATTCATGAATACATATCCAATGCTAGAAAAGATTACTTGGACAAAATTTCAACTGAAATCATCAAAAACCACGATGTTATCGGTATAGAGG
ATTTGCAAGTATCGAATATGTTAAAGAATTATAAGTTAGCAAAAGCAATTAGTGAGGTATCTTGGTCGCAATTTCGATCCATGTTAGAATACAAAGCAAA
ATGGTATGGCAAACAAGTCATTGTCGTATCGAAAACATTTGCTTCCAGCCAATTATGTTCTTGTTGTGGGTATCAAAATAAAGACGTTAAAAATCTCAAC
CTACGTGAATGGGACTGTCCTTCTTGTCAAACACATCATGATAGAGATATTAACGCAAGTATCAATCTAAAGAATGAAGCGATAAGGCTTCTAACCGCAA
GGACTGCGGGGTTAGCCTAATCAATTAGAGTTCGATAGAACTCTTTACTTAGGAATCCCTCACTTCTAAACGAAGTGAAAGTGGGGGTAGTTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1137 bp378 aa1841320+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEVNQIIMNKAYKFRIYPNQAQAILINKTIGCSRFVFNYFLSLWDQAYKETGKGLTYGTCSAKLPAMKKELVWLKEVDSIAIQSSVRNLADAYTRFFKKQ
NSAPRFKSKKNNVQSYTTKKTNENIAVVGNKIKLPKLGLVRFAKSREVEGRIVNATVRRNPSGRYFVSLLVETEVQELPKTSSYIGIDVGLKDFAILSDG
THYENPKFFRSLEDKLAKAQRVLSRRMKGSSRWNKQRVKVARIHEYISNARKDYLDKISTEIIKNHDVIGIEDLQVSNMLKNYKLAKAISEVSWSQFRSM
LEYKAKWYGKQVIVVSKTFASSQLCSCCGYQNKDVKNLNLREWDCPSCQTHHDRDINASINLKNEAIRLLTARTAGLA

 

Blast result :
Comments
ISBth17 is 67% aa similar to ISCpe2. There is no transposase in this IS, only the ORFB.
References
1] ISfinder annotation (2009)
2] Ziniu Y., Qiu S. (2009) Direct submission to ISfinder.