ISBth17
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Bacillus thuringiensis | Bacillus thuringiensis subsp. kurstaki YBT-1520 |
DNA section
IS Length : 1395 bp
Ends
Left end : TATTTTAGCCAAGAAGACTCCTTCCTCAAGGAGCGTGAAGGGTCACAGCCCAGTGAGTAGGTGGGAGATGAATTGGCTTCGAACAAGGGATGGCAGGAAG II struct. : Yes
Right end : CGCAAGGACTGCGGGGTTAGCCTAATCAATTAGAGTTCGATAGAACTCTTTACTTAGGAATCCCTCACTTCTAAACGAAGTGAAAGTGGGGGTAGTTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTTTTTAT | TTAT | TATGTATAAATTAG | TCAa |
DNA sequence
TATTTTAGCCAAGAAGACTCCTTCCTCAAGGAGCGTGAAGGGTCACAGCCCAGTGAGTAGGTGGGAGATGAATTGGCTTCGAACAAGGGATGGCAGGAAG
CCATCTTAATTGTTCGACATACAGAAAGTGTTACTCGACTACCTATCGAATGTACGTTTGGTGTATAATAGTCATATACCGAAATGGAGGTGAATCAAAT
AATCATGAATAAAGCCTATAAGTTTCGTATCTATCCAAATCAGGCACAAGCAATTCTAATCAACAAAACGATTGGATGTTCTCGCTTTGTATTCAATTAT
TTCCTATCCTTATGGGATCAAGCATACAAAGAGACAGGAAAAGGCTTGACCTATGGTACATGCTCTGCCAAACTACCTGCCATGAAGAAAGAGCTTGTTT
GGCTAAAAGAAGTGGATAGTATTGCGATTCAGTCGTCTGTTCGCAACCTTGCGGATGCTTATACACGCTTTTTCAAAAAACAAAACAGCGCACCGCGCTT
TAAATCTAAGAAGAACAACGTACAATCTTATACTACAAAAAAAACAAATGAAAACATTGCCGTTGTAGGGAACAAAATAAAGTTGCCGAAACTAGGTCTT
GTTCGATTTGCCAAAAGTCGCGAAGTAGAGGGGCGTATTGTAAATGCTACGGTTAGACGGAACCCTTCTGGTAGATATTTTGTGTCACTATTAGTTGAAA
CAGAAGTACAAGAACTTCCGAAAACAAGTTCTTACATTGGAATAGATGTAGGACTAAAAGATTTCGCTATTTTGTCAGATGGAACCCACTATGAAAATCC
GAAGTTTTTCCGATCATTAGAAGATAAGTTGGCGAAAGCACAGCGTGTGCTTTCTAGAAGAATGAAAGGATCTTCTCGCTGGAATAAACAACGAGTAAAG
GTAGCTAGAATTCATGAATACATATCCAATGCTAGAAAAGATTACTTGGACAAAATTTCAACTGAAATCATCAAAAACCACGATGTTATCGGTATAGAGG
ATTTGCAAGTATCGAATATGTTAAAGAATTATAAGTTAGCAAAAGCAATTAGTGAGGTATCTTGGTCGCAATTTCGATCCATGTTAGAATACAAAGCAAA
ATGGTATGGCAAACAAGTCATTGTCGTATCGAAAACATTTGCTTCCAGCCAATTATGTTCTTGTTGTGGGTATCAAAATAAAGACGTTAAAAATCTCAAC
CTACGTGAATGGGACTGTCCTTCTTGTCAAACACATCATGATAGAGATATTAACGCAAGTATCAATCTAAAGAATGAAGCGATAAGGCTTCTAACCGCAA
GGACTGCGGGGTTAGCCTAATCAATTAGAGTTCGATAGAACTCTTTACTTAGGAATCCCTCACTTCTAAACGAAGTGAAAGTGGGGGTAGTTCAA
CCATCTTAATTGTTCGACATACAGAAAGTGTTACTCGACTACCTATCGAATGTACGTTTGGTGTATAATAGTCATATACCGAAATGGAGGTGAATCAAAT
AATCATGAATAAAGCCTATAAGTTTCGTATCTATCCAAATCAGGCACAAGCAATTCTAATCAACAAAACGATTGGATGTTCTCGCTTTGTATTCAATTAT
TTCCTATCCTTATGGGATCAAGCATACAAAGAGACAGGAAAAGGCTTGACCTATGGTACATGCTCTGCCAAACTACCTGCCATGAAGAAAGAGCTTGTTT
GGCTAAAAGAAGTGGATAGTATTGCGATTCAGTCGTCTGTTCGCAACCTTGCGGATGCTTATACACGCTTTTTCAAAAAACAAAACAGCGCACCGCGCTT
TAAATCTAAGAAGAACAACGTACAATCTTATACTACAAAAAAAACAAATGAAAACATTGCCGTTGTAGGGAACAAAATAAAGTTGCCGAAACTAGGTCTT
GTTCGATTTGCCAAAAGTCGCGAAGTAGAGGGGCGTATTGTAAATGCTACGGTTAGACGGAACCCTTCTGGTAGATATTTTGTGTCACTATTAGTTGAAA
CAGAAGTACAAGAACTTCCGAAAACAAGTTCTTACATTGGAATAGATGTAGGACTAAAAGATTTCGCTATTTTGTCAGATGGAACCCACTATGAAAATCC
GAAGTTTTTCCGATCATTAGAAGATAAGTTGGCGAAAGCACAGCGTGTGCTTTCTAGAAGAATGAAAGGATCTTCTCGCTGGAATAAACAACGAGTAAAG
GTAGCTAGAATTCATGAATACATATCCAATGCTAGAAAAGATTACTTGGACAAAATTTCAACTGAAATCATCAAAAACCACGATGTTATCGGTATAGAGG
ATTTGCAAGTATCGAATATGTTAAAGAATTATAAGTTAGCAAAAGCAATTAGTGAGGTATCTTGGTCGCAATTTCGATCCATGTTAGAATACAAAGCAAA
ATGGTATGGCAAACAAGTCATTGTCGTATCGAAAACATTTGCTTCCAGCCAATTATGTTCTTGTTGTGGGTATCAAAATAAAGACGTTAAAAATCTCAAC
CTACGTGAATGGGACTGTCCTTCTTGTCAAACACATCATGATAGAGATATTAACGCAAGTATCAATCTAAAGAATGAAGCGATAAGGCTTCTAACCGCAA
GGACTGCGGGGTTAGCCTAATCAATTAGAGTTCGATAGAACTCTTTACTTAGGAATCCCTCACTTCTAAACGAAGTGAAAGTGGGGGTAGTTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1137 bp | 378 aa | 184 | 1320 | + | No |
AG : TnpB
ORF sequence :
MEVNQIIMNKAYKFRIYPNQAQAILINKTIGCSRFVFNYFLSLWDQAYKETGKGLTYGTCSAKLPAMKKELVWLKEVDSIAIQSSVRNLADAYTRFFKKQ
NSAPRFKSKKNNVQSYTTKKTNENIAVVGNKIKLPKLGLVRFAKSREVEGRIVNATVRRNPSGRYFVSLLVETEVQELPKTSSYIGIDVGLKDFAILSDG
THYENPKFFRSLEDKLAKAQRVLSRRMKGSSRWNKQRVKVARIHEYISNARKDYLDKISTEIIKNHDVIGIEDLQVSNMLKNYKLAKAISEVSWSQFRSM
LEYKAKWYGKQVIVVSKTFASSQLCSCCGYQNKDVKNLNLREWDCPSCQTHHDRDINASINLKNEAIRLLTARTAGLA
NSAPRFKSKKNNVQSYTTKKTNENIAVVGNKIKLPKLGLVRFAKSREVEGRIVNATVRRNPSGRYFVSLLVETEVQELPKTSSYIGIDVGLKDFAILSDG
THYENPKFFRSLEDKLAKAQRVLSRRMKGSSRWNKQRVKVARIHEYISNARKDYLDKISTEIIKNHDVIGIEDLQVSNMLKNYKLAKAISEVSWSQFRSM
LEYKAKWYGKQVIVVSKTFASSQLCSCCGYQNKDVKNLNLREWDCPSCQTHHDRDINASINLKNEAIRLLTARTAGLA
Blast result :
Comments
ISBth17 is 67% aa similar to ISCpe2. There is no transposase in this IS, only the ORFB.
References
1] ISfinder annotation (2009)
2] Ziniu Y., Qiu S. (2009) Direct submission to ISfinder.
2] Ziniu Y., Qiu S. (2009) Direct submission to ISfinder.