ISMch6

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011758 ND Methylobacterium chloromethanicum
Methylobacterium chloromethanicum CM4 plasmid pMCHL01
DNA section
IS Length : 1379 bp

Ends


Left end : AGTCAGAAGATCGGTGCCAGTTCCCGGGCGGTCTGACCCGCACAGCGATGGACCGTCGGTTAAGCTGGCGCCGCAAGGCGTCCTGGTGTGGCCTGACCCG
Right end : CTGAAGCGCTACATCGCCCGGGAGGTGTTCACCCTCATCACCCGCAGGCAGAAGGCGATCCGTCAGACCCGCATCGCCGCTTGACACATAGAAGGGCGTC

Insertion site


Left flankDirect repeatRight flankDR Length
TCACTCGGACCAGGGCTCGC0

DNA sequence

AGTCAGAAGATCGGTGCCAGTTCCCGGGCGGTCTGACCCGCACAGCGATGGACCGTCGGTTAAGCTGGCGCCGCAAGGCGTCCTGGTGTGGCCTGACCCG
CACTCTGATCGACCGAACGTGTCCTTCCCCGGACCTGTCGGCCGCCCGGGAACGCCCTGCGGTGGGGTTTTACCTCGCCGATGCCTGTGACCCGAGAAGG
GCCTGACCGTCTGGTCTCGTGACTGTCCTGTCCGCGCATCCGGTCGTGGTGAAGCCGTCAGGCTCGATCGCCAGGAGGATGGGATGAGTGCGCAGGAAGT
TCGGGAACGACACGTCGTCGGGGGTGTCGACACACATAAGGATCTGCACGTGGCCGCGGTCGTCGACGACCGGGATCGGGTTCTGGCGAGCGCCAGCTTT
GATGCGACCCGCCAGGGCTATCGGCAGATGCTGGCCTGGATGCGTTCGTTCGGATCGCTGCAACGCGTTGGGGTCGAGTCGACCGGCAGCTATGGTGCCG
GCCTGCTCCGCTTCCTCCAGCAGGCCGGGATCGAGGTGCTGGAGGTGACCGCCCCCGACGCCCAGGATCGGCGGCGTCGGGGCAAGAACGACGACTTCGA
TGCCCAGAGTGCGGCGCACGCCGCCTTCGCCGGCACCCGCACCGTGACGCCGCGCACCCGGGACGGCATGGTCGAGTCCTTGCGCATCCTGAGCGCGTGC
CGGAAGACGGCGGTCGCGGCCCGACGCATTGCCCTGCAGATGATCCACAACACCATCGTCTGCGCGCCCGATGCCCTGCGCGAGACGCTGCGCCGGATGA
CCCGGATGCAGCTCGTGCGGACCCTGGCGGCGTGGCGGCCCGATCTGAGCGCCTACCGCGACGTCGAGGCCGCTTACCGGATCGGCCTGAAGTCGTTGGC
GCGGCGCTACCTGGAACTGCACGACGAGATCGCCGATCTCGATGCCATGATCGGCACCATCGTCGACGAGCTTGCGCCGGAACTCGTGGCCCGCAACTCC
ATCGGCCGCAATGGCGCCGCGCAGCTGCTCCTGACGGCCGGCGATAACCCCGAGCGCCTGCGCTCTGAGGCAGGCTTCGCTGCGTTGTGTGGCGTGAGCC
CCGTGCCGGCCTCGTCGGGCAAGACGGTGCGCCATCGCCTCAACCGAGGCGGTGATCGCGCGGCCAACAGCGCACTGCACATCATTGCCATCGGGCGACT
GCGGACCGACGCGCGGACCAAGGCGTACATGGCCCGTCGCATCGCCGAGGGCCACTCCAAGCTGGAAGCGATCCGCTGCCTGAAGCGCTACATCGCCCGG
GAGGTGTTCACCCTCATCACCCGCAGGCAGAAGGCGATCCGTCAGACCCGCATCGCCGCTTGACACATAGAAGGGCGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1080 bp359 aa2841363+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MSAQEVRERHVVGGVDTHKDLHVAAVVDDRDRVLASASFDATRQGYRQMLAWMRSFGSLQRVGVESTGSYGAGLLRFLQQAGIEVLEVTAPDAQDRRRRG
KNDDFDAQSAAHAAFAGTRTVTPRTRDGMVESLRILSACRKTAVAARRIALQMIHNTIVCAPDALRETLRRMTRMQLVRTLAAWRPDLSAYRDVEAAYRI
GLKSLARRYLELHDEIADLDAMIGTIVDELAPELVARNSIGRNGAAQLLLTAGDNPERLRSEAGFAALCGVSPVPASSGKTVRHRLNRGGDRAANSALHI
IAIGRLRTDARTKAYMARRIAEGHSKLEAIRCLKRYIAREVFTLITRRQKAIRQTRIAA

 

Blast result :
Comments
ISMch6 is 84% aa similar to ISEc21.
References
1] Ming-Chun Lee and David Robinson, direct submission.