ISBth8
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Bacillus thuringiensis | Bacillus thuringiensis subsp. kurstaki YBT-1520 |
DNA section
IS Length : 1288 bp
Ends
IR Length : 29/39
IRL : TGGTATTATCCCCTATAGGTAGACAGTAAAAAAAGAGTCCATCTGATATG
IRR : TGGTCATCTCCCTGTCAAGTAGACAGAAATAAAAAGAGTATTATGCCACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCATCTGAAC | GCT | TTACTCTTTT | 3 |
DNA sequence
TGGTATTATCCCCTATAGGTAGACAGTAAAAAAAGAGTCCATCTGATATGATGGACTCAATACTGTTTTATCTGGAGGGGATTTTTTTATGGCAAGAAAA
GGACAATCATTTCAAAAATATACAGAAGAACTAAAGCGAGAAGCAGTTCGTCTTCGATTAGAAGAGAGAAAATCATTGCGAGAAATTCGTGAACAACTCG
GTGTGAAGAGCGATGCCCAGATTATTGAGTGGGTAAAACGTGCGCAACAAGGGGAGTCCTTTGATGATCAACGTGGTGTCTGGAATCGAAAGAATTTTAA
TAGTCTAGAAGAAGAAAATGCTTATTTGAAGGCACAGGTTGAGTATTTAAAAAAGCGCAATCCAAATCTACACGGGAAGGAATGGTCCTAAAGAAAGAAC
GATTTTCTCTTATCGATTCATTACGCCAAGCCTATCCACTCCGATGGTTGCTTCAAATCGGGGAAGTTTCTAAGGCTGGCTACTATAAATGGCGGAAATA
TCATAACGTGCAGCGTTTACGTCAGAAAAGGGATATGTGGCATAAAGAACATATTTTATCTATTCATCGTCAGCACCCTTACTATGGGTATAAACGTATG
ACTCGTGCTTTGGCTCGAGAAGGAATGGTAATGAATCATAAACGTGTTCGTCGTCTTATGAGAGAGCTGGGTATTCAATCTATCATTCGAAAAAAACGTC
CGTTTTATGGAAGAAAAACATCTGTGGTATTTAAAAATCATTTGAATCGAGAGTTTCAAGCTGAAAAGCAAAATCAAAAATTCGTAACAGATATTACTTA
TGTACGAATCGGAGAACAATTTGCCTATTTGTCGGCTGTGTTAGATTTATACAACAATGAAATTGTTGCCTGGAAGCTATCTTCAAGAAATGATTTAGAT
TTGGTTTTAACTACATTACGTCAATTAGAAGGGAAGTCATTAACTACTAAGCCCCTTTTCCATTCAGATCAAGGGTTTCAATATACATCTAAATCCTACG
CAAAACAGTTAGAGAAATTAGGATTTGTCGGTAGTCATTCTAGACGTGGAAACTGTTTTGATAATGCGTGTATCGAATCATTCTTCTCACATTTAAAAAC
AGAGAAGTTGTATTTAGTGTGCCCAAAAACATATGAAATGGCCTACCGAGCAATTCAAGAATATATTCAGTTTTATAATACAGAAAGATTCCAAGAAAAA
CTTCACGGCCTTTCCCCGATAGAATATCGGGAAAAGGCCGTGGCATAATACTCTTTTTATTTCTGTCTACTTGACAGGGAGATGACCA
GGACAATCATTTCAAAAATATACAGAAGAACTAAAGCGAGAAGCAGTTCGTCTTCGATTAGAAGAGAGAAAATCATTGCGAGAAATTCGTGAACAACTCG
GTGTGAAGAGCGATGCCCAGATTATTGAGTGGGTAAAACGTGCGCAACAAGGGGAGTCCTTTGATGATCAACGTGGTGTCTGGAATCGAAAGAATTTTAA
TAGTCTAGAAGAAGAAAATGCTTATTTGAAGGCACAGGTTGAGTATTTAAAAAAGCGCAATCCAAATCTACACGGGAAGGAATGGTCCTAAAGAAAGAAC
GATTTTCTCTTATCGATTCATTACGCCAAGCCTATCCACTCCGATGGTTGCTTCAAATCGGGGAAGTTTCTAAGGCTGGCTACTATAAATGGCGGAAATA
TCATAACGTGCAGCGTTTACGTCAGAAAAGGGATATGTGGCATAAAGAACATATTTTATCTATTCATCGTCAGCACCCTTACTATGGGTATAAACGTATG
ACTCGTGCTTTGGCTCGAGAAGGAATGGTAATGAATCATAAACGTGTTCGTCGTCTTATGAGAGAGCTGGGTATTCAATCTATCATTCGAAAAAAACGTC
CGTTTTATGGAAGAAAAACATCTGTGGTATTTAAAAATCATTTGAATCGAGAGTTTCAAGCTGAAAAGCAAAATCAAAAATTCGTAACAGATATTACTTA
TGTACGAATCGGAGAACAATTTGCCTATTTGTCGGCTGTGTTAGATTTATACAACAATGAAATTGTTGCCTGGAAGCTATCTTCAAGAAATGATTTAGAT
TTGGTTTTAACTACATTACGTCAATTAGAAGGGAAGTCATTAACTACTAAGCCCCTTTTCCATTCAGATCAAGGGTTTCAATATACATCTAAATCCTACG
CAAAACAGTTAGAGAAATTAGGATTTGTCGGTAGTCATTCTAGACGTGGAAACTGTTTTGATAATGCGTGTATCGAATCATTCTTCTCACATTTAAAAAC
AGAGAAGTTGTATTTAGTGTGCCCAAAAACATATGAAATGGCCTACCGAGCAATTCAAGAATATATTCAGTTTTATAATACAGAAAGATTCCAAGAAAAA
CTTCACGGCCTTTCCCCGATAGAATATCGGGAAAAGGCCGTGGCATAATACTCTTTTTATTTCTGTCTACTTGACAGGGAGATGACCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
303 bp | 100 aa | 89 | 391 | + | No |
Description : First part of the transposase
ORF sequence :
MARKGQSFQKYTEELKREAVRLRLEERKSLREIREQLGVKSDAQIIEWVKRAQQGESFDDQRGVWNRKNFNSLEEENAYLKAQVEYLKKRNPNLHGKEWS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
906 bp | 301 aa | 343 | 1248 | + | No |
Description : Second part of the transposase
ORF sequence :
VFKKAQSKSTREGMVLKKERFSLIDSLRQAYPLRWLLQIGEVSKAGYYKWRKYHNVQRLRQKRDMWHKEHILSIHRQHPYYGYKRMTRALAREGMVMNHK
RVRRLMRELGIQSIIRKKRPFYGRKTSVVFKNHLNREFQAEKQNQKFVTDITYVRIGEQFAYLSAVLDLYNNEIVAWKLSSRNDLDLVLTTLRQLEGKSL
TTKPLFHSDQGFQYTSKSYAKQLEKLGFVGSHSRRGNCFDNACIESFFSHLKTEKLYLVCPKTYEMAYRAIQEYIQFYNTERFQEKLHGLSPIEYREKAV
A
RVRRLMRELGIQSIIRKKRPFYGRKTSVVFKNHLNREFQAEKQNQKFVTDITYVRIGEQFAYLSAVLDLYNNEIVAWKLSSRNDLDLVLTTLRQLEGKSL
TTKPLFHSDQGFQYTSKSYAKQLEKLGFVGSHSRRGNCFDNACIESFFSHLKTEKLYLVCPKTYEMAYRAIQEYIQFYNTERFQEKLHGLSPIEYREKAV
A
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1160 bp | 386 aa | 89 | 1248 | + | Yes |
Chemistry : DDE
ORF sequence :
MARKGQSFQKYTEELKREAVRLRLEERKSLREIREQLGVKSDAQIIEWVKRAQQGESFDDQRGVWNRKNFNSLEEENAYLKAQVEYLKKAQSKSTREGMV
LKKERFSLIDSLRQAYPLRWLLQIGEVSKAGYYKWRKYHNVQRLRQKRDMWHKEHILSIHRQHPYYGYKRMTRALAREGMVMNHKRVRRLMRELGIQSII
RKKRPFYGRKTSVVFKNHLNREFQAEKQNQKFVTDITYVRIGEQFAYLSAVLDLYNNEIVAWKLSSRNDLDLVLTTLRQLEGKSLTTKPLFHSDQGFQYT
SKSYAKQLEKLGFVGSHSRRGNCFDNACIESFFSHLKTEKLYLVCPKTYEMAYRAIQEYIQFYNTERFQEKLHGLSPIEYREKAVA
LKKERFSLIDSLRQAYPLRWLLQIGEVSKAGYYKWRKYHNVQRLRQKRDMWHKEHILSIHRQHPYYGYKRMTRALAREGMVMNHKRVRRLMRELGIQSII
RKKRPFYGRKTSVVFKNHLNREFQAEKQNQKFVTDITYVRIGEQFAYLSAVLDLYNNEIVAWKLSSRNDLDLVLTTLRQLEGKSLTTKPLFHSDQGFQYT
SKSYAKQLEKLGFVGSHSRRGNCFDNACIESFFSHLKTEKLYLVCPKTYEMAYRAIQEYIQFYNTERFQEKLHGLSPIEYREKAVA
Blast result :
Comments
Genome in progress.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
ISBth8 is 83% aa similar to ISLtaq1.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
ISBth8 is 83% aa similar to ISLtaq1.
References
1] Ziniu Y. & Ning Q. (2009) Direct submission to ISfinder.