ISPfr21
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 2632 bp
Ends
IR Length : 21/22
IRL : TGTACTGACCGGACACGTTGGTTGAGGAGCGAAACGCGGTTCGGTCCTGT
IRR : TGTACTGACCGGAGACGTTGGTCAATCGTGAGAAGGGTGGCTGGTTGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACCGGCGCA | GCTAGG | CCCACAACAA | 6 |
DNA sequence
TGTACTGACCGGACACGTTGGTTGAGGAGCGAAACGCGGTTCGGTCCTGTTGTGAGGGAGAACTCCTCACCGTCGGACGAGGAGTTCCTGTGATGCGTTG
CAGGCTTGGGCGAACACCCTTGGGTCGCCTTGGATTGACGCGGTGACCTGCGCTCCTTCATGGAGCAGGTGCAGCAGGGTCCCAGTGTTCTCGTCGCCGC
TGGCGATCTGCGTGAACAGGGCCAGCATCCAGGCTTTCTCTGCCCGGATGAACTTGGTGGCCTCATGGTCGCTGGCGCCGATCTCGGACCACGCGTTGAC
GAACGCGCAACCGCGGGGGGTGCTGGTCGCCCATTGGGCAGTGTGCTGGTAGACGATGTCCAAGGCTTGAGCTGGGGAGGCATCGGTCAATGTTTCCAGG
AGTTCGCCTTGCCAGGCGTGGGCGCGTTGTTGTAGGTAGCAGACGATCAACCGATCCTTGGATCCGTAGCGTTGGTACAAGGTCCTCTTTGTGGTCCCTG
CGTGCTCGACGATGCTGTCGACACCGGTGGCCGTGATCCCGTGGTCGCGGAAGAGTTCGGCGGCAGCATCGAGAATCCGGCGGCCGACCGGCGTGGTGTC
GACAGGCTCGAATACCTCGAGGTCGATGTCCATGCTTTTGTCCCCTCAGCCGACGGTGGTGCACTGACAGTATACCGACCGGTGTGTTTACCTGACTGGA
TGCGACGGGTCATGTGTGTAGCGTTTGTGGTGGCGTGGAGTTCCGGGTTCGTCGGGGCGACGCTGGCGGACCGGACAGGCGTGGGGACGTGGTCCCTGCT
GGCCTGGCGTTACCTGGCGACCGCCCTCGTACTCCTCGTCGGGTGTCTCCTGGTTCCTTCACTGCGCCACTCTTTCTGCGCGCTGGGTCGACGTGAGGTG
TTGCAACAGGTCATCCTGTCCGTCTTGTCTCATGTGCTCTTCCTGGGCGGTGTCTTCCTCGCCGCCGAAGAGGGGCTGGATGCCGGCTTGTCGGCGTTGG
TGTGTGCACTCCAGCCGCTGATCGTGACCGTGGCAGGACGAATCTTTTTCGGTGACCGGGTCAGAATCGTCCAGTGGGTTGGCTTGCTCATTGCCCTGGG
TGGCGTCTCCCTGAGCGTGGGAGGCATCAGCGCAGCGGGGGTGGGAAGCGTGGGCCTGGTAGCAATGAGTCTGCTGGGGCTGTCTACGGCCTCACTGCTG
GAACGCTCGTGGAATCCCCAGGTGCCAGTGACGGTCAGCCTGACCGTGCAGGTGAGCGTCGCGGCCGTGATCTTCAGCGGTGTCGCCCTCGTGACCGGCG
GTCTCGCACTGCAGGTCACGGGAGCACTGGTGCTGGCCATCAGTTGGCTGGTTCTCTTGTCAGGTCTCGGCGGCTACGCCACGTTCATCTGGTGCCTACG
CCACGTGGGAGCCACCACGACCAGCACTCTGCTCTACCTGACTGCACCGGTCACGATGCTGTGGGCGTGGTGCATGTTTGGCCAGCAGCCCTCGCCCCTG
CAGTGGATTGGGCTCGCGGTCGTCCTGAGCGGCGTCGGCCTCGCGACAAGACGCACCAACCACCGTGAGCAAGGCACAGCCTGACCACCGGCCCCAATGC
GGCCGGATCGTACGCAACGACACCACGTCAATATCAGGAGCAAGGCTTCCATGACCCACACGAATGCTGCTCTCACACCGCGCCACCGGCTGATCGTCGC
TCGGCTGGTCGTCGAGGAAGACTGGCCGGTCAGCGAGGTCGCTGCCCGGTTCCAGGTGTCTTGGCCGACCGTGAAGCGCTGGGCCGACCGCTACCGGGCC
GGCCAGTCCATGTAGGACCGCTCCTCGCGGCCGCAGCACTCGCCGAACAAGACCGACCAGGCCACCACGCGGTGCTGTATCCAGCTCCGGCTACGTCTGC
GCGAGGGGCCGGTTCAGCTCGCGTGCCGGCTCGGCGTCGCGCCGTCCACGGTCCACCGGATCTTGGTCGACGCCCGCCTGAACCGGCTGTCGAACGTTGA
CCGCGCGACTGGGGAACCCGTCCGTCGCTACGAACACGATCACCCCGGGGCCATGCTGCACGTCGATGTGAAGAAGCTCGGCAACATCCCCGACGGCGGG
GGCTGGCGTTACGTCGGCCGCCGGCAAGGCGAGAAGAACCGGGCCGCCACGCCTGACAAGGCCAAGAACAAGTGGCGGGACCCTTTGATGGGCAAGGCCT
ATGTCCACACCGCCATCGACGACCACTCCCGTGTCGCCTATGCCGAAGTGCACGACGACGAAACCGCCTTCACCGCCGCCGCTGTTCTGGTGAGGGCTGT
CGAGTGGTTCAACGCCTGCGGGGTCACGGTGGAGCGGGTGCTGTCTGACAACGGTGGCGCTTACCGGTCGCACCTGTGGCGAGACACCTGCGCCGAGCTG
GGCATCCGGCACAAGCGCACCAGGCCGTATCGACCGCAGACCAACGGCAAGATCGAGCGCTTCCGCCGAACCCTGTCCGACGGCTGGGCCTATGCCCGCT
GCTACACCTCTGAGACGGAGCGCCGCGGGGAGCTCGAGGGCTGGCTGCACAACTACAACCATCACCGACCCCACACGGCTTGCGGCAACCAGCCACCCTT
CTCACGATTGACCAACGTCTCCGGTCAGTACA
CAGGCTTGGGCGAACACCCTTGGGTCGCCTTGGATTGACGCGGTGACCTGCGCTCCTTCATGGAGCAGGTGCAGCAGGGTCCCAGTGTTCTCGTCGCCGC
TGGCGATCTGCGTGAACAGGGCCAGCATCCAGGCTTTCTCTGCCCGGATGAACTTGGTGGCCTCATGGTCGCTGGCGCCGATCTCGGACCACGCGTTGAC
GAACGCGCAACCGCGGGGGGTGCTGGTCGCCCATTGGGCAGTGTGCTGGTAGACGATGTCCAAGGCTTGAGCTGGGGAGGCATCGGTCAATGTTTCCAGG
AGTTCGCCTTGCCAGGCGTGGGCGCGTTGTTGTAGGTAGCAGACGATCAACCGATCCTTGGATCCGTAGCGTTGGTACAAGGTCCTCTTTGTGGTCCCTG
CGTGCTCGACGATGCTGTCGACACCGGTGGCCGTGATCCCGTGGTCGCGGAAGAGTTCGGCGGCAGCATCGAGAATCCGGCGGCCGACCGGCGTGGTGTC
GACAGGCTCGAATACCTCGAGGTCGATGTCCATGCTTTTGTCCCCTCAGCCGACGGTGGTGCACTGACAGTATACCGACCGGTGTGTTTACCTGACTGGA
TGCGACGGGTCATGTGTGTAGCGTTTGTGGTGGCGTGGAGTTCCGGGTTCGTCGGGGCGACGCTGGCGGACCGGACAGGCGTGGGGACGTGGTCCCTGCT
GGCCTGGCGTTACCTGGCGACCGCCCTCGTACTCCTCGTCGGGTGTCTCCTGGTTCCTTCACTGCGCCACTCTTTCTGCGCGCTGGGTCGACGTGAGGTG
TTGCAACAGGTCATCCTGTCCGTCTTGTCTCATGTGCTCTTCCTGGGCGGTGTCTTCCTCGCCGCCGAAGAGGGGCTGGATGCCGGCTTGTCGGCGTTGG
TGTGTGCACTCCAGCCGCTGATCGTGACCGTGGCAGGACGAATCTTTTTCGGTGACCGGGTCAGAATCGTCCAGTGGGTTGGCTTGCTCATTGCCCTGGG
TGGCGTCTCCCTGAGCGTGGGAGGCATCAGCGCAGCGGGGGTGGGAAGCGTGGGCCTGGTAGCAATGAGTCTGCTGGGGCTGTCTACGGCCTCACTGCTG
GAACGCTCGTGGAATCCCCAGGTGCCAGTGACGGTCAGCCTGACCGTGCAGGTGAGCGTCGCGGCCGTGATCTTCAGCGGTGTCGCCCTCGTGACCGGCG
GTCTCGCACTGCAGGTCACGGGAGCACTGGTGCTGGCCATCAGTTGGCTGGTTCTCTTGTCAGGTCTCGGCGGCTACGCCACGTTCATCTGGTGCCTACG
CCACGTGGGAGCCACCACGACCAGCACTCTGCTCTACCTGACTGCACCGGTCACGATGCTGTGGGCGTGGTGCATGTTTGGCCAGCAGCCCTCGCCCCTG
CAGTGGATTGGGCTCGCGGTCGTCCTGAGCGGCGTCGGCCTCGCGACAAGACGCACCAACCACCGTGAGCAAGGCACAGCCTGACCACCGGCCCCAATGC
GGCCGGATCGTACGCAACGACACCACGTCAATATCAGGAGCAAGGCTTCCATGACCCACACGAATGCTGCTCTCACACCGCGCCACCGGCTGATCGTCGC
TCGGCTGGTCGTCGAGGAAGACTGGCCGGTCAGCGAGGTCGCTGCCCGGTTCCAGGTGTCTTGGCCGACCGTGAAGCGCTGGGCCGACCGCTACCGGGCC
GGCCAGTCCATGTAGGACCGCTCCTCGCGGCCGCAGCACTCGCCGAACAAGACCGACCAGGCCACCACGCGGTGCTGTATCCAGCTCCGGCTACGTCTGC
GCGAGGGGCCGGTTCAGCTCGCGTGCCGGCTCGGCGTCGCGCCGTCCACGGTCCACCGGATCTTGGTCGACGCCCGCCTGAACCGGCTGTCGAACGTTGA
CCGCGCGACTGGGGAACCCGTCCGTCGCTACGAACACGATCACCCCGGGGCCATGCTGCACGTCGATGTGAAGAAGCTCGGCAACATCCCCGACGGCGGG
GGCTGGCGTTACGTCGGCCGCCGGCAAGGCGAGAAGAACCGGGCCGCCACGCCTGACAAGGCCAAGAACAAGTGGCGGGACCCTTTGATGGGCAAGGCCT
ATGTCCACACCGCCATCGACGACCACTCCCGTGTCGCCTATGCCGAAGTGCACGACGACGAAACCGCCTTCACCGCCGCCGCTGTTCTGGTGAGGGCTGT
CGAGTGGTTCAACGCCTGCGGGGTCACGGTGGAGCGGGTGCTGTCTGACAACGGTGGCGCTTACCGGTCGCACCTGTGGCGAGACACCTGCGCCGAGCTG
GGCATCCGGCACAAGCGCACCAGGCCGTATCGACCGCAGACCAACGGCAAGATCGAGCGCTTCCGCCGAACCCTGTCCGACGGCTGGGCCTATGCCCGCT
GCTACACCTCTGAGACGGAGCGCCGCGGGGAGCTCGAGGGCTGGCTGCACAACTACAACCATCACCGACCCCACACGGCTTGCGGCAACCAGCCACCCTT
CTCACGATTGACCAACGTCTCCGGTCAGTACA
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
567 bp | 188 aa | 633 | 67 | - | No |
Annotation : Transcriptional regulator, TetR familyDescription : Transcriptional Regulator factor
ORF sequence :
MDIDLEVFEPVDTTPVGRRILDAAAELFRDHGITATGVDSIVEHAGTTKRTLYQRYGSKDRLIVCYLQQRAHAWQGELLETLTDASPAQALDIVYQHTAQ
WATSTPRGCAFVNAWSEIGASDHEATKFIRAEKAWMLALFTQIASGDENTGTLLHLLHEGAQVTASIQGDPRVFAQACNASQELLVRR
WATSTPRGCAFVNAWSEIGASDHEATKFIRAEKAWMLALFTQIASGDENTGTLLHLLHEGAQVTASIQGDPRVFAQACNASQELLVRR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
858 bp | 285 aa | 727 | 1584 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MVAWSSGFVGATLADRTGVGTWSLLAWRYLATALVLLVGCLLVPSLRHSFCALGRREVLQQVILSVLSHVLFLGGVFLAAEEGLDAGLSALVCALQPLIV
TVAGRIFFGDRVRIVQWVGLLIALGGVSLSVGGISAAGVGSVGLVAMSLLGLSTASLLERSWNPQVPVTVSLTVQVSVAAVIFSGVALVTGGLALQVTGA
LVLAISWLVLLSGLGGYATFIWCLRHVGATTTSTLLYLTAPVTMLWAWCMFGQQPSPLQWIGLAVVLSGVGLATRRTNHREQGTA
TVAGRIFFGDRVRIVQWVGLLIALGGVSLSVGGISAAGVGSVGLVAMSLLGLSTASLLERSWNPQVPVTVSLTVQVSVAAVIFSGVALVTGGLALQVTGA
LVLAISWLVLLSGLGGYATFIWCLRHVGATTTSTLLYLTAPVTMLWAWCMFGQQPSPLQWIGLAVVLSGVGLATRRTNHREQGTA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
987 bp | 328 aa | 1651 | 2637 | + | No |
Chemistry : DDE
ORF sequence :
MTHTNAALTPRHRLIVARLVVEEDWPVSEVAARFQVSWPTVKRWADRYRAGQSM*DRSSRPQHSPNKTDQATTRCCIQLRLRLREGPVQLACRLGVAPST
VHRILVDARLNRLSNVDRATGEPVRRYEHDHPGAMLHVDVKKLGNIPDGGGWRYVGRRQGEKNRAATPDKAKNKWRDPLMGKAYVHTAIDDHSRVAYAEV
HDDETAFTAAAVLVRAVEWFNACGVTVERVLSDNGGAYRSHLWRDTCAELGIRHKRTRPYRPQTNGKIERFRRTLSDGWAYARCYTSETERRGELEGWLH
NYNHHRPHTACGNQPPFSRLTNVSGQYS
VHRILVDARLNRLSNVDRATGEPVRRYEHDHPGAMLHVDVKKLGNIPDGGGWRYVGRRQGEKNRAATPDKAKNKWRDPLMGKAYVHTAIDDHSRVAYAEV
HDDETAFTAAAVLVRAVEWFNACGVTVERVLSDNGGAYRSHLWRDTCAELGIRHKRTRPYRPQTNGKIERFRRTLSDGWAYARCYTSETERRGELEGWLH
NYNHHRPHTACGNQPPFSRLTNVSGQYS
Blast result :
Comments
ISPfr21 is 85%(ORFC : the transposase) aa similar to ISKrh1. ORFA and ORFB are passenger gene annotated respectively as transcriptional regulator and hypothetical protein.
The transposase had a STOP codon in frame and was probably inactive.
The transposase had a STOP codon in frame and was probably inactive.
References
1] ISfinder annotation (2009)