ISPfr20

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1505 bp

Ends


IR Length : 42/50

IRL : GGCTCTTCGTCATTCAGCGTGGTTTGGTGAGGCTGGCCTGAGCGGTTTGC
IRR : GGCTCTTCGTCATTCAGCGTGGTTTGGTTGTCCTTTCCTGACCGGCTTGG

Insertion site


Left flankDirect repeatRight flankDR Length
GCTGCTGGACGTCATGCTCGCGGTCGAC8

DNA sequence

GGCTCTTCGTCATTCAGCGTGGTTTGGTGAGGCTGGCCTGAGCGGTTTGCAACGCTGAGAGGGTGTGTCGGTGCTGGTGAGAAGGGTCGGGGCCTTTTTG
AATGGGAAGCGTTCAGACTCACCCGTTCGAAGAAGACCCCGACCGTGTTCCACACTACCTGCACTCATCCCGGCTACTGCTGCCTGGCCGACGCAATCGC
TGACCTCCCCGGCTTCCACGTCACGCGTGTGGACCGCTCACCTGCGGGCCTGCGTCTGAACGTCGAGACCGACCCTGGGGGAGTGCTCTGCCCCGCCTGT
GGGGTCCAGGCTGTGGCGGATGGTCGCCAACAACGTCTCCTCCACGACATCGGTGTCTTCGGTGTCCCTGTCCTCCTCGTGTGGTCCAGGCGCACCTGGC
GGTGCAGGCAACACTCCTGCCCCCAGGTCTCGTGGGGGGAAGAGACGCAGTTGGCTCCACCCCTGCCAAGCACTTCACGACCCGAGCCATCACCTGGGCT
GTGAACCAGCTTCTCACCCGAGACGTTGTCATCTCCGCCCTGGCCCGGGACCTCCAGGTGGGGTGGCGCACCTTGTGGAAGGCAATCGAGGGACCCCTCC
AGGAGCGCCTCAAGGAGATCAGCGACCAGGCCAGCGTGGAAGCCCTGGGCCTCGACGAGCACGTGTGGCGTCATTGCGGGCCCCACAAGAATCGGATGAT
CACCGGCGTCGTGGACCACACCAGACCGAAGAGAGGCAAGGACGGGAAGACGAAGCCGTTCGCGAGGCTCCTGGATGTCCAGGTCGGGCGCTCGGGAGCG
GTCGCTGAGGACTGGTTGGCCTCCCAAGGCAAGGAGTTCGCGAGCAAGATCCGCATCGCTGCCATCGACCCCTACAGGGGCTACGCCAACGCCATCTCAG
CGACCCTGAAAGAGGCGGACATGGTCGTCGACATCTTCCACGTGACAAAGCTGGCCAGTCAGGCCCTGGACGAGGTGCGTCGCCGAGTCCAGCAAGACAC
CCTGGGGCGCAGGGGACATGCGAAGGATCCCTTGTATCGGGCTCGGAGACTCCTCCTCACCGGCGCCAACCACCTCACCGAGAAGATGGCGACCAAGCTG
GATGCCCTCCTCCAAGAAGGCGACCCGAACTGGGAGGTGACCATCACTTGGACCGTCTACCAGAAGCTGATCGATGCCTACCAGCAGAGCGACTCCCATG
ACATGGTCACCCTCATCGATGCCCTCAAGGACTGTCCCATCCCCGAAGTCGCCAGGCTGGGGCGCACCTTGAAGTCCTGGAAGAGGGAGATCCTGGCCTA
TTGGCACACCGACCGCTCGAATGCGGGCCCCACCGAGGCCATCAACAACGTCATCGAGACCACCCGACGCATCGCCCGCGGATTCCGCAACTTCGACAAC
TACCGCCTCCGGATCCTCGCCTCAGCCTCCGGACAACGCCCCTACCGCCAACCCCCCAAGCCGGTCAGGAAAGGACAACCAAACCACGCTGAATGACGAA
GAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1116 bp371 aa3811496+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MVQAHLAVQATLLPPGLVGGRDAVGSTPAKHFTTRAITWAVNQLLTRDVVISALARDLQVGWRTLWKAIEGPLQERLKEISDQASVEALGLDEHVWRHCG
PHKNRMITGVVDHTRPKRGKDGKTKPFARLLDVQVGRSGAVAEDWLASQGKEFASKIRIAAIDPYRGYANAISATLKEADMVVDIFHVTKLASQALDEVR
RRVQQDTLGRRGHAKDPLYRARRLLLTGANHLTEKMATKLDALLQEGDPNWEVTITWTVYQKLIDAYQQSDSHDMVTLIDALKDCPIPEVARLGRTLKSW
KREILAYWHTDRSNAGPTEAINNVIETTRRIARGFRNFDNYRLRILASASGQRPYRQPPKPVRKGQPNHAE

 

Blast result :
Comments
ISPfr20 is 56% aa similar to ISPfr18.
References
1] ISfinder annotation (2009)