ISPfr20
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1505 bp
Ends
IR Length : 42/50
IRL : GGCTCTTCGTCATTCAGCGTGGTTTGGTGAGGCTGGCCTGAGCGGTTTGC
IRR : GGCTCTTCGTCATTCAGCGTGGTTTGGTTGTCCTTTCCTGACCGGCTTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTGCTGGAC | GTCATGCT | CGCGGTCGAC | 8 |
DNA sequence
GGCTCTTCGTCATTCAGCGTGGTTTGGTGAGGCTGGCCTGAGCGGTTTGCAACGCTGAGAGGGTGTGTCGGTGCTGGTGAGAAGGGTCGGGGCCTTTTTG
AATGGGAAGCGTTCAGACTCACCCGTTCGAAGAAGACCCCGACCGTGTTCCACACTACCTGCACTCATCCCGGCTACTGCTGCCTGGCCGACGCAATCGC
TGACCTCCCCGGCTTCCACGTCACGCGTGTGGACCGCTCACCTGCGGGCCTGCGTCTGAACGTCGAGACCGACCCTGGGGGAGTGCTCTGCCCCGCCTGT
GGGGTCCAGGCTGTGGCGGATGGTCGCCAACAACGTCTCCTCCACGACATCGGTGTCTTCGGTGTCCCTGTCCTCCTCGTGTGGTCCAGGCGCACCTGGC
GGTGCAGGCAACACTCCTGCCCCCAGGTCTCGTGGGGGGAAGAGACGCAGTTGGCTCCACCCCTGCCAAGCACTTCACGACCCGAGCCATCACCTGGGCT
GTGAACCAGCTTCTCACCCGAGACGTTGTCATCTCCGCCCTGGCCCGGGACCTCCAGGTGGGGTGGCGCACCTTGTGGAAGGCAATCGAGGGACCCCTCC
AGGAGCGCCTCAAGGAGATCAGCGACCAGGCCAGCGTGGAAGCCCTGGGCCTCGACGAGCACGTGTGGCGTCATTGCGGGCCCCACAAGAATCGGATGAT
CACCGGCGTCGTGGACCACACCAGACCGAAGAGAGGCAAGGACGGGAAGACGAAGCCGTTCGCGAGGCTCCTGGATGTCCAGGTCGGGCGCTCGGGAGCG
GTCGCTGAGGACTGGTTGGCCTCCCAAGGCAAGGAGTTCGCGAGCAAGATCCGCATCGCTGCCATCGACCCCTACAGGGGCTACGCCAACGCCATCTCAG
CGACCCTGAAAGAGGCGGACATGGTCGTCGACATCTTCCACGTGACAAAGCTGGCCAGTCAGGCCCTGGACGAGGTGCGTCGCCGAGTCCAGCAAGACAC
CCTGGGGCGCAGGGGACATGCGAAGGATCCCTTGTATCGGGCTCGGAGACTCCTCCTCACCGGCGCCAACCACCTCACCGAGAAGATGGCGACCAAGCTG
GATGCCCTCCTCCAAGAAGGCGACCCGAACTGGGAGGTGACCATCACTTGGACCGTCTACCAGAAGCTGATCGATGCCTACCAGCAGAGCGACTCCCATG
ACATGGTCACCCTCATCGATGCCCTCAAGGACTGTCCCATCCCCGAAGTCGCCAGGCTGGGGCGCACCTTGAAGTCCTGGAAGAGGGAGATCCTGGCCTA
TTGGCACACCGACCGCTCGAATGCGGGCCCCACCGAGGCCATCAACAACGTCATCGAGACCACCCGACGCATCGCCCGCGGATTCCGCAACTTCGACAAC
TACCGCCTCCGGATCCTCGCCTCAGCCTCCGGACAACGCCCCTACCGCCAACCCCCCAAGCCGGTCAGGAAAGGACAACCAAACCACGCTGAATGACGAA
GAGCC
AATGGGAAGCGTTCAGACTCACCCGTTCGAAGAAGACCCCGACCGTGTTCCACACTACCTGCACTCATCCCGGCTACTGCTGCCTGGCCGACGCAATCGC
TGACCTCCCCGGCTTCCACGTCACGCGTGTGGACCGCTCACCTGCGGGCCTGCGTCTGAACGTCGAGACCGACCCTGGGGGAGTGCTCTGCCCCGCCTGT
GGGGTCCAGGCTGTGGCGGATGGTCGCCAACAACGTCTCCTCCACGACATCGGTGTCTTCGGTGTCCCTGTCCTCCTCGTGTGGTCCAGGCGCACCTGGC
GGTGCAGGCAACACTCCTGCCCCCAGGTCTCGTGGGGGGAAGAGACGCAGTTGGCTCCACCCCTGCCAAGCACTTCACGACCCGAGCCATCACCTGGGCT
GTGAACCAGCTTCTCACCCGAGACGTTGTCATCTCCGCCCTGGCCCGGGACCTCCAGGTGGGGTGGCGCACCTTGTGGAAGGCAATCGAGGGACCCCTCC
AGGAGCGCCTCAAGGAGATCAGCGACCAGGCCAGCGTGGAAGCCCTGGGCCTCGACGAGCACGTGTGGCGTCATTGCGGGCCCCACAAGAATCGGATGAT
CACCGGCGTCGTGGACCACACCAGACCGAAGAGAGGCAAGGACGGGAAGACGAAGCCGTTCGCGAGGCTCCTGGATGTCCAGGTCGGGCGCTCGGGAGCG
GTCGCTGAGGACTGGTTGGCCTCCCAAGGCAAGGAGTTCGCGAGCAAGATCCGCATCGCTGCCATCGACCCCTACAGGGGCTACGCCAACGCCATCTCAG
CGACCCTGAAAGAGGCGGACATGGTCGTCGACATCTTCCACGTGACAAAGCTGGCCAGTCAGGCCCTGGACGAGGTGCGTCGCCGAGTCCAGCAAGACAC
CCTGGGGCGCAGGGGACATGCGAAGGATCCCTTGTATCGGGCTCGGAGACTCCTCCTCACCGGCGCCAACCACCTCACCGAGAAGATGGCGACCAAGCTG
GATGCCCTCCTCCAAGAAGGCGACCCGAACTGGGAGGTGACCATCACTTGGACCGTCTACCAGAAGCTGATCGATGCCTACCAGCAGAGCGACTCCCATG
ACATGGTCACCCTCATCGATGCCCTCAAGGACTGTCCCATCCCCGAAGTCGCCAGGCTGGGGCGCACCTTGAAGTCCTGGAAGAGGGAGATCCTGGCCTA
TTGGCACACCGACCGCTCGAATGCGGGCCCCACCGAGGCCATCAACAACGTCATCGAGACCACCCGACGCATCGCCCGCGGATTCCGCAACTTCGACAAC
TACCGCCTCCGGATCCTCGCCTCAGCCTCCGGACAACGCCCCTACCGCCAACCCCCCAAGCCGGTCAGGAAAGGACAACCAAACCACGCTGAATGACGAA
GAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1116 bp | 371 aa | 381 | 1496 | + | No |
Chemistry : Unknow
ORF sequence :
MVQAHLAVQATLLPPGLVGGRDAVGSTPAKHFTTRAITWAVNQLLTRDVVISALARDLQVGWRTLWKAIEGPLQERLKEISDQASVEALGLDEHVWRHCG
PHKNRMITGVVDHTRPKRGKDGKTKPFARLLDVQVGRSGAVAEDWLASQGKEFASKIRIAAIDPYRGYANAISATLKEADMVVDIFHVTKLASQALDEVR
RRVQQDTLGRRGHAKDPLYRARRLLLTGANHLTEKMATKLDALLQEGDPNWEVTITWTVYQKLIDAYQQSDSHDMVTLIDALKDCPIPEVARLGRTLKSW
KREILAYWHTDRSNAGPTEAINNVIETTRRIARGFRNFDNYRLRILASASGQRPYRQPPKPVRKGQPNHAE
PHKNRMITGVVDHTRPKRGKDGKTKPFARLLDVQVGRSGAVAEDWLASQGKEFASKIRIAAIDPYRGYANAISATLKEADMVVDIFHVTKLASQALDEVR
RRVQQDTLGRRGHAKDPLYRARRLLLTGANHLTEKMATKLDALLQEGDPNWEVTITWTVYQKLIDAYQQSDSHDMVTLIDALKDCPIPEVARLGRTLKSW
KREILAYWHTDRSNAGPTEAINNVIETTRRIARGFRNFDNYRLRILASASGQRPYRQPPKPVRKGQPNHAE
Blast result :
Comments
ISPfr20 is 56% aa similar to ISPfr18.
References
1] ISfinder annotation (2009)