ISPfr19

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1089 bp

Ends


IR Length : 21/26

IRL : TGTTCTTCCTCGGGAGGTTGTGAACGGTTCGGGTCGTAGGGGAAGACCCC
IRR : TGTTCTTCCCCGCAAGGTTGGGTACGCGGTCGGAGGGAGTGAGGCCGTTG

Insertion site


Left flankDirect repeatRight flankDR Length
GGTGAACCGCACTAGAGGGTCTCGCG6
CAGTTGACCACTTAGCGCCCGATCCG6

DNA sequence

TGTTCTTCCTCGGGAGGTTGTGAACGGTTCGGGTCGTAGGGGAAGACCCCCGGGCAGGATGTGGGTTACCACACTCAATCCTGACCACGGAGGCCTTCAT
GACCCACGCTAACGCACCCCTGACCCCTGCGGGCCGTCGCCGGTTGGCGATCGTGGTCGTCGAGGAGGGATGGTCACTGCGCAGGGCCGCCGAACGGTTC
CAGGTCTCGGCGGGCACCGCGAAGCGGTGGGCCGATCGTTACCGGGCCGGTGAGCCCCTGACCGACCGCACCTCACGCCCTGCGCGCTGTCCCGGGCGCC
TGGACCGACGCACCGAGCGACGCATCATCGGGCTACGGACCACCCGCCGGTGGGGACCCCACCGGATCGCCTACCACCTCCACCTGGCCCGTTCCACGGT
CGGGCGGGTCCTCACCCGCTACCGGATGCCGCTGCTGGCACACCTGGACCGCGCCACCGGCGCGGCGGTGCGCAGGCCACCAGCCGTGCGCTACGAGAAG
GCCAGCTGCGGGGAACTGGTCCACGTCGACATCAAGAAACAAGGACGCATCCCCGACGGCGGCGGATGGCGCATCCACGGGGCGGGCTCACGCCAACACA
TCGCCAACGGCCGTGCCCGCTACCAACGCGCACGCGCCGGAAAGACCGTGTCGGGTTACCGCTACCTCCACCATGCCGTGGACGACCATTCCCGCCTGGC
CTACTCAGAGATCCTCGACGCCCAGGACGCCGACGCGGCGGCCGGGTTCATGGCCCGGGCCCTGGACTGGTTCAGCGCGGCCGGGATCGCCGTCGCGGCC
GTCATGACCGACAACGGCTGGTGCTACCGCTCCAAGGCATTCGCCCGGGCCCTGGGCCCCATCACCCACGTGCGGACCCGCCCCTACCGGCCCCAGACCA
ACGGCAAGGTAGAACGGTTCAACCGGACCCTGTCCGACGAATGGGCCTACGCCCGCGCCTACTACAACGAGGAAGACCGCGAGCAGGCATACTACGCATG
GATCCACGAATACAACCACCACCGACCCCACACCAGCCTCAACGGCCTCACTCCCTCCGACCGCGTACCCAACCTTGCGGGGAAGAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp331 aa991091+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTHANAPLTPAGRRRLAIVVVEEGWSLRRAAERFQVSAGTAKRWADRYRAGEPLTDRTSRPARCPGRLDRRTERRIIGLRTTRRWGPHRIAYHLHLARST
VGRVLTRYRMPLLAHLDRATGAAVRRPPAVRYEKASCGELVHVDIKKQGRIPDGGGWRIHGAGSRQHIANGRARYQRARAGKTVSGYRYLHHAVDDHSRL
AYSEILDAQDADAAAGFMARALDWFSAAGIAVAAVMTDNGWCYRSKAFARALGPITHVRTRPYRPQTNGKVERFNRTLSDEWAYARAYYNEEDREQAYYA
WIHEYNHHRPHTSLNGLTPSDRVPNLAGKNN

 

Blast result :
Comments
ISPfr19 is 76% aa similar to ISPfr17. The STOP codon is in the insertion site.
References
1] ISfinder annotation (2009)