ISPfr19
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1089 bp
Ends
IR Length : 21/26
IRL : TGTTCTTCCTCGGGAGGTTGTGAACGGTTCGGGTCGTAGGGGAAGACCCC
IRR : TGTTCTTCCCCGCAAGGTTGGGTACGCGGTCGGAGGGAGTGAGGCCGTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTGAACCGC | ACTAGA | GGGTCTCGCG | 6 |
CAGTTGACCA | CTTAGC | GCCCGATCCG | 6 |
DNA sequence
TGTTCTTCCTCGGGAGGTTGTGAACGGTTCGGGTCGTAGGGGAAGACCCCCGGGCAGGATGTGGGTTACCACACTCAATCCTGACCACGGAGGCCTTCAT
GACCCACGCTAACGCACCCCTGACCCCTGCGGGCCGTCGCCGGTTGGCGATCGTGGTCGTCGAGGAGGGATGGTCACTGCGCAGGGCCGCCGAACGGTTC
CAGGTCTCGGCGGGCACCGCGAAGCGGTGGGCCGATCGTTACCGGGCCGGTGAGCCCCTGACCGACCGCACCTCACGCCCTGCGCGCTGTCCCGGGCGCC
TGGACCGACGCACCGAGCGACGCATCATCGGGCTACGGACCACCCGCCGGTGGGGACCCCACCGGATCGCCTACCACCTCCACCTGGCCCGTTCCACGGT
CGGGCGGGTCCTCACCCGCTACCGGATGCCGCTGCTGGCACACCTGGACCGCGCCACCGGCGCGGCGGTGCGCAGGCCACCAGCCGTGCGCTACGAGAAG
GCCAGCTGCGGGGAACTGGTCCACGTCGACATCAAGAAACAAGGACGCATCCCCGACGGCGGCGGATGGCGCATCCACGGGGCGGGCTCACGCCAACACA
TCGCCAACGGCCGTGCCCGCTACCAACGCGCACGCGCCGGAAAGACCGTGTCGGGTTACCGCTACCTCCACCATGCCGTGGACGACCATTCCCGCCTGGC
CTACTCAGAGATCCTCGACGCCCAGGACGCCGACGCGGCGGCCGGGTTCATGGCCCGGGCCCTGGACTGGTTCAGCGCGGCCGGGATCGCCGTCGCGGCC
GTCATGACCGACAACGGCTGGTGCTACCGCTCCAAGGCATTCGCCCGGGCCCTGGGCCCCATCACCCACGTGCGGACCCGCCCCTACCGGCCCCAGACCA
ACGGCAAGGTAGAACGGTTCAACCGGACCCTGTCCGACGAATGGGCCTACGCCCGCGCCTACTACAACGAGGAAGACCGCGAGCAGGCATACTACGCATG
GATCCACGAATACAACCACCACCGACCCCACACCAGCCTCAACGGCCTCACTCCCTCCGACCGCGTACCCAACCTTGCGGGGAAGAACA
GACCCACGCTAACGCACCCCTGACCCCTGCGGGCCGTCGCCGGTTGGCGATCGTGGTCGTCGAGGAGGGATGGTCACTGCGCAGGGCCGCCGAACGGTTC
CAGGTCTCGGCGGGCACCGCGAAGCGGTGGGCCGATCGTTACCGGGCCGGTGAGCCCCTGACCGACCGCACCTCACGCCCTGCGCGCTGTCCCGGGCGCC
TGGACCGACGCACCGAGCGACGCATCATCGGGCTACGGACCACCCGCCGGTGGGGACCCCACCGGATCGCCTACCACCTCCACCTGGCCCGTTCCACGGT
CGGGCGGGTCCTCACCCGCTACCGGATGCCGCTGCTGGCACACCTGGACCGCGCCACCGGCGCGGCGGTGCGCAGGCCACCAGCCGTGCGCTACGAGAAG
GCCAGCTGCGGGGAACTGGTCCACGTCGACATCAAGAAACAAGGACGCATCCCCGACGGCGGCGGATGGCGCATCCACGGGGCGGGCTCACGCCAACACA
TCGCCAACGGCCGTGCCCGCTACCAACGCGCACGCGCCGGAAAGACCGTGTCGGGTTACCGCTACCTCCACCATGCCGTGGACGACCATTCCCGCCTGGC
CTACTCAGAGATCCTCGACGCCCAGGACGCCGACGCGGCGGCCGGGTTCATGGCCCGGGCCCTGGACTGGTTCAGCGCGGCCGGGATCGCCGTCGCGGCC
GTCATGACCGACAACGGCTGGTGCTACCGCTCCAAGGCATTCGCCCGGGCCCTGGGCCCCATCACCCACGTGCGGACCCGCCCCTACCGGCCCCAGACCA
ACGGCAAGGTAGAACGGTTCAACCGGACCCTGTCCGACGAATGGGCCTACGCCCGCGCCTACTACAACGAGGAAGACCGCGAGCAGGCATACTACGCATG
GATCCACGAATACAACCACCACCGACCCCACACCAGCCTCAACGGCCTCACTCCCTCCGACCGCGTACCCAACCTTGCGGGGAAGAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
993 bp | 331 aa | 99 | 1091 | + | No |
Chemistry : DDE
ORF sequence :
MTHANAPLTPAGRRRLAIVVVEEGWSLRRAAERFQVSAGTAKRWADRYRAGEPLTDRTSRPARCPGRLDRRTERRIIGLRTTRRWGPHRIAYHLHLARST
VGRVLTRYRMPLLAHLDRATGAAVRRPPAVRYEKASCGELVHVDIKKQGRIPDGGGWRIHGAGSRQHIANGRARYQRARAGKTVSGYRYLHHAVDDHSRL
AYSEILDAQDADAAAGFMARALDWFSAAGIAVAAVMTDNGWCYRSKAFARALGPITHVRTRPYRPQTNGKVERFNRTLSDEWAYARAYYNEEDREQAYYA
WIHEYNHHRPHTSLNGLTPSDRVPNLAGKNN
VGRVLTRYRMPLLAHLDRATGAAVRRPPAVRYEKASCGELVHVDIKKQGRIPDGGGWRIHGAGSRQHIANGRARYQRARAGKTVSGYRYLHHAVDDHSRL
AYSEILDAQDADAAAGFMARALDWFSAAGIAVAAVMTDNGWCYRSKAFARALGPITHVRTRPYRPQTNGKVERFNRTLSDEWAYARAYYNEEDREQAYYA
WIHEYNHHRPHTSLNGLTPSDRVPNLAGKNN
Blast result :
Comments
ISPfr19 is 76% aa similar to ISPfr17. The STOP codon is in the insertion site.
References
1] ISfinder annotation (2009)