ISPfr18
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1427 bp
Ends
IR Length : 20/25
IRL : GGGCTCTTCGCAGTTGAGGGTGTAGCCCGGGACCGCCGGCTGGTTCGCGG
IRR : GCGGATAAAGGGCTCATCGCGAATGAGAGTGTAGGAGCGGTCTGAATCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGAACTTACG | ACCTATCTTC | 0 |
DNA sequence
GGGCTCTTCGCAGTTGAGGGTGTAGCCCGGGACCGCCGGCTGGTTCGCGGATAGGCGTCGAGGTCTTCCAGGATGGAAGTTCTCACGCTCACCATCCGCC
GGAAGACCTCGACTTGCACCACCCTACGTTCGTGACCCCTGACCTGACCACGTTCTGCCGTCTCGACGAGCTCGGCCTTCAAGCCGTCGGGCAGCTGCTC
GAGGCTGATCGGGCGGTGCTGGAGTGCCGCGTCGTCGAGGACGACCCGTGGTGTCGGAAGTGCGGCGCGGAGGGCGTGCCGCGTGACACGGTGACGCGGC
CGCTGGCGCATGAGCCGTTCGGGCATCGGCCGACGACGCTGCTGGTCCGGGTGCGCCGCTACCGGTGCACGCACTGCCGCCGGACCTGGCGGCAGGACAC
GTCGAAGGCGGCGGCGCCCAGGGAGAAGATCTCCCGCGGCGGGATCGGGTGGGCACTCACGGCGATCGTGGTCGACCACCTCACCGTCTCCCGCGCCGCA
GCAGGGCTCGGGGTGTCGTGGCATACCGCGAACACCGCGATCATCGCCGAAGGCAAGCGTCGCCTGATCGACGACCCGGCGAGGTTCGACGGGGTCACCA
CGATCGGTGTCGATGAGCACGTCTGGCGTCACACACGGTTTGGCGAGAAGTACGTGACCGTGATCATCGACCTCACCCCCGCGAGGAACAAGACGGGCCC
GGCCAGGCTGCTGGACATGGTCGAGGGCCGCTCGAAGCAGGTGTTCAAGGAGTGGCTCGCCGCCCGGCCTGCGGAGTGGTCGAGCCGGATCGAGGTGGTC
GCGATGGACGGGTTCTCCGGGTTCAAGACCGCCGCGGCCGAAGAGCTCCCCGACGCGGTCCCGGTGATGGACCCGTTCCACGTCGTCCGCCTGGCCGGCG
ACGCGCTCGACCGGACCCGGCAGCGCGTCCAGCAAGACACACTCGGGCACCGCGGTCACGCCGGCGACCCGCTCTACGGGGTCCGCCGCACCCTCCACAC
CGGCGCGAGCTTCCTCACCAAGAAACAGACCGCGCGGCTCGACGCGGTGTTCGCCGCCGAGGAGCACGTCGAGGTCGAAGCGACCTGGGGCATCTACCAG
CGCATCGTCGCCGCCTACCGCGAACCCGACAAGAACAAGGCGAAGGAGATGATGCGGGCGGTGATCGACTCTGTCAGCAACGGCGTCCCCGCGCTGCTCA
AAGAGATCCGTCGCCTCGGCCGCACGCTGAAGCAGCGCGCCGCGGACATCCTCGCGTTCTTCGACCGCCCCGGAACGAGCAACGGCCCAACGGAGGCCAT
CAACGGCCGGCTCGAGCACCTTCGCGGTTCCGCCCTCGGCTTCCGGAACCTCACGCACTACGTCGCCAGATCGCTCCTCGAAGCCGGCGGATTCAGACCG
CTCCTACACTCTCATTCGCGATGAGCCCTTTATCCGC
GGAAGACCTCGACTTGCACCACCCTACGTTCGTGACCCCTGACCTGACCACGTTCTGCCGTCTCGACGAGCTCGGCCTTCAAGCCGTCGGGCAGCTGCTC
GAGGCTGATCGGGCGGTGCTGGAGTGCCGCGTCGTCGAGGACGACCCGTGGTGTCGGAAGTGCGGCGCGGAGGGCGTGCCGCGTGACACGGTGACGCGGC
CGCTGGCGCATGAGCCGTTCGGGCATCGGCCGACGACGCTGCTGGTCCGGGTGCGCCGCTACCGGTGCACGCACTGCCGCCGGACCTGGCGGCAGGACAC
GTCGAAGGCGGCGGCGCCCAGGGAGAAGATCTCCCGCGGCGGGATCGGGTGGGCACTCACGGCGATCGTGGTCGACCACCTCACCGTCTCCCGCGCCGCA
GCAGGGCTCGGGGTGTCGTGGCATACCGCGAACACCGCGATCATCGCCGAAGGCAAGCGTCGCCTGATCGACGACCCGGCGAGGTTCGACGGGGTCACCA
CGATCGGTGTCGATGAGCACGTCTGGCGTCACACACGGTTTGGCGAGAAGTACGTGACCGTGATCATCGACCTCACCCCCGCGAGGAACAAGACGGGCCC
GGCCAGGCTGCTGGACATGGTCGAGGGCCGCTCGAAGCAGGTGTTCAAGGAGTGGCTCGCCGCCCGGCCTGCGGAGTGGTCGAGCCGGATCGAGGTGGTC
GCGATGGACGGGTTCTCCGGGTTCAAGACCGCCGCGGCCGAAGAGCTCCCCGACGCGGTCCCGGTGATGGACCCGTTCCACGTCGTCCGCCTGGCCGGCG
ACGCGCTCGACCGGACCCGGCAGCGCGTCCAGCAAGACACACTCGGGCACCGCGGTCACGCCGGCGACCCGCTCTACGGGGTCCGCCGCACCCTCCACAC
CGGCGCGAGCTTCCTCACCAAGAAACAGACCGCGCGGCTCGACGCGGTGTTCGCCGCCGAGGAGCACGTCGAGGTCGAAGCGACCTGGGGCATCTACCAG
CGCATCGTCGCCGCCTACCGCGAACCCGACAAGAACAAGGCGAAGGAGATGATGCGGGCGGTGATCGACTCTGTCAGCAACGGCGTCCCCGCGCTGCTCA
AAGAGATCCGTCGCCTCGGCCGCACGCTGAAGCAGCGCGCCGCGGACATCCTCGCGTTCTTCGACCGCCCCGGAACGAGCAACGGCCCAACGGAGGCCAT
CAACGGCCGGCTCGAGCACCTTCGCGGTTCCGCCCTCGGCTTCCGGAACCTCACGCACTACGTCGCCAGATCGCTCCTCGAAGCCGGCGGATTCAGACCG
CTCCTACACTCTCATTCGCGATGAGCCCTTTATCCGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1371 bp | 436 aa | 54 | 1424 | + | No |
Chemistry : Unknow
ORF sequence :
LHHPTFVTPDLTTFCRLDELGLQAVGQLLEADRAVLECRVVEDDPWCRKCGAEGVPRDTVTRPLAHEPFGHRPTTLLVRVRRYRCTHCRRTWRQDTSKAA
APREKISRGGIGWALTAIVVDHLTVSRAAAGLGVSWHTANTAIIAEGKRRLIDDPARFDGVTTIGVDEHVWRHTRFGEKYVTVIIDLTPARNKTGPARLL
DMVEGRSKQVFKEWLAARPAEWSSRIEVVAMDGFSGFKTAAAEELPDAVPVMDPFHVVRLAGDALDRTRQRVQQDTLGHRGHAGDPLYGVRRTLHTGASF
LTKKQTARLDAVFAAEEHVEVEATWGIYQRIVAAYREPDKNKAKEMMRAVIDSVSNGVPALLKEIRRLGRTLKQRAADILAFFDRPGTSNGPTEAINGRL
EHLRGSALGFRNLTHYVARSLLEAGGFRPLLHSHSR
APREKISRGGIGWALTAIVVDHLTVSRAAAGLGVSWHTANTAIIAEGKRRLIDDPARFDGVTTIGVDEHVWRHTRFGEKYVTVIIDLTPARNKTGPARLL
DMVEGRSKQVFKEWLAARPAEWSSRIEVVAMDGFSGFKTAAAEELPDAVPVMDPFHVVRLAGDALDRTRQRVQQDTLGHRGHAGDPLYGVRRTLHTGASF
LTKKQTARLDAVFAAEEHVEVEATWGIYQRIVAAYREPDKNKAKEMMRAVIDSVSNGVPALLKEIRRLGRTLKQRAADILAFFDRPGTSNGPTEAINGRL
EHLRGSALGFRNLTHYVARSLLEAGGFRPLLHSHSR
Blast result :
Comments
ISPfr18 is 91% aa similar to ISAar42. ISPfr18 is disrupted by insertion of ISPfr10 in the genome. The sequence was reconstructed in silico by deletion of this IS and of one of the direct repeat generated by its insertion.
References
1] ISfinder annotation (2009)