ISPfr18

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1427 bp

Ends


IR Length : 20/25

IRL : GGGCTCTTCGCAGTTGAGGGTGTAGCCCGGGACCGCCGGCTGGTTCGCGG
IRR : GCGGATAAAGGGCTCATCGCGAATGAGAGTGTAGGAGCGGTCTGAATCCG

Insertion site


Left flankDirect repeatRight flankDR Length
TGAACTTACGACCTATCTTC0

DNA sequence

GGGCTCTTCGCAGTTGAGGGTGTAGCCCGGGACCGCCGGCTGGTTCGCGGATAGGCGTCGAGGTCTTCCAGGATGGAAGTTCTCACGCTCACCATCCGCC
GGAAGACCTCGACTTGCACCACCCTACGTTCGTGACCCCTGACCTGACCACGTTCTGCCGTCTCGACGAGCTCGGCCTTCAAGCCGTCGGGCAGCTGCTC
GAGGCTGATCGGGCGGTGCTGGAGTGCCGCGTCGTCGAGGACGACCCGTGGTGTCGGAAGTGCGGCGCGGAGGGCGTGCCGCGTGACACGGTGACGCGGC
CGCTGGCGCATGAGCCGTTCGGGCATCGGCCGACGACGCTGCTGGTCCGGGTGCGCCGCTACCGGTGCACGCACTGCCGCCGGACCTGGCGGCAGGACAC
GTCGAAGGCGGCGGCGCCCAGGGAGAAGATCTCCCGCGGCGGGATCGGGTGGGCACTCACGGCGATCGTGGTCGACCACCTCACCGTCTCCCGCGCCGCA
GCAGGGCTCGGGGTGTCGTGGCATACCGCGAACACCGCGATCATCGCCGAAGGCAAGCGTCGCCTGATCGACGACCCGGCGAGGTTCGACGGGGTCACCA
CGATCGGTGTCGATGAGCACGTCTGGCGTCACACACGGTTTGGCGAGAAGTACGTGACCGTGATCATCGACCTCACCCCCGCGAGGAACAAGACGGGCCC
GGCCAGGCTGCTGGACATGGTCGAGGGCCGCTCGAAGCAGGTGTTCAAGGAGTGGCTCGCCGCCCGGCCTGCGGAGTGGTCGAGCCGGATCGAGGTGGTC
GCGATGGACGGGTTCTCCGGGTTCAAGACCGCCGCGGCCGAAGAGCTCCCCGACGCGGTCCCGGTGATGGACCCGTTCCACGTCGTCCGCCTGGCCGGCG
ACGCGCTCGACCGGACCCGGCAGCGCGTCCAGCAAGACACACTCGGGCACCGCGGTCACGCCGGCGACCCGCTCTACGGGGTCCGCCGCACCCTCCACAC
CGGCGCGAGCTTCCTCACCAAGAAACAGACCGCGCGGCTCGACGCGGTGTTCGCCGCCGAGGAGCACGTCGAGGTCGAAGCGACCTGGGGCATCTACCAG
CGCATCGTCGCCGCCTACCGCGAACCCGACAAGAACAAGGCGAAGGAGATGATGCGGGCGGTGATCGACTCTGTCAGCAACGGCGTCCCCGCGCTGCTCA
AAGAGATCCGTCGCCTCGGCCGCACGCTGAAGCAGCGCGCCGCGGACATCCTCGCGTTCTTCGACCGCCCCGGAACGAGCAACGGCCCAACGGAGGCCAT
CAACGGCCGGCTCGAGCACCTTCGCGGTTCCGCCCTCGGCTTCCGGAACCTCACGCACTACGTCGCCAGATCGCTCCTCGAAGCCGGCGGATTCAGACCG
CTCCTACACTCTCATTCGCGATGAGCCCTTTATCCGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1371 bp436 aa541424+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

LHHPTFVTPDLTTFCRLDELGLQAVGQLLEADRAVLECRVVEDDPWCRKCGAEGVPRDTVTRPLAHEPFGHRPTTLLVRVRRYRCTHCRRTWRQDTSKAA
APREKISRGGIGWALTAIVVDHLTVSRAAAGLGVSWHTANTAIIAEGKRRLIDDPARFDGVTTIGVDEHVWRHTRFGEKYVTVIIDLTPARNKTGPARLL
DMVEGRSKQVFKEWLAARPAEWSSRIEVVAMDGFSGFKTAAAEELPDAVPVMDPFHVVRLAGDALDRTRQRVQQDTLGHRGHAGDPLYGVRRTLHTGASF
LTKKQTARLDAVFAAEEHVEVEATWGIYQRIVAAYREPDKNKAKEMMRAVIDSVSNGVPALLKEIRRLGRTLKQRAADILAFFDRPGTSNGPTEAINGRL
EHLRGSALGFRNLTHYVARSLLEAGGFRPLLHSHSR

 

Blast result :
Comments
ISPfr18 is 91% aa similar to ISAar42. ISPfr18 is disrupted by insertion of ISPfr10 in the genome. The sequence was reconstructed in silico by deletion of this IS and of one of the direct repeat generated by its insertion.
References
1] ISfinder annotation (2009)