ISPfr16
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1234 bp
Ends
IR Length : 22/27
IRL : GGCGGATTCAAGCGGTCAGTGCAACGAGTCCTGTGAGATGAGGCAGTCAC
IRR : GGCGGATTCAAGCGATGGGCGCAAGGAACTCTGCGAGCTTCTCTGATGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGGAGCAGCCC | ATCGAGTTCG | 0 |
DNA sequence
GGCGGATTCAAGCGGTCAGTGCAACGAGTCCTGTGAGATGAGGCAGTCACTGATCACAGGAGGATCCGGATGCAGGGCAGGCACGGTCATCTCAGCCGGG
AGCAGAAGCAGCTCGCGCTCAGGCTGCACGGGAAGGGCTGGCGGCTGGTCGACATCGCGAAGGAGATCGGCTGCAGCGCGCCGATGGTCGGCATCATGGC
CCGCACCGGCAGGCACCTTGACGCCAGGCCGTTCGGGTGGGAGCCACGTCAGGGCTGTCTGACGATCGACGAGCGCGAGCAGATCCTGCTGGGCATCAAT
CGCGGCGATACCTTCACCGCGATCGCCGAGCAGCTGGGGCGTGCGGTGTCGACCGTCAGCCGTGAGGTGAAGCGCGGTGGGGGTCGCTGCGGCTACTCGG
CGTGGCGTGGTCATGAACGTGCCCGCGAGCAGGCGCGCCGACCGAAGCCGTTCAAGCTTGCGTCGGGCCGGCTGCTCGAGGAGGTTGCCAGCCGGCTGGA
GCAACTGTGGTCACCTGAGGAGATCGCGGCGCGCCTACGGTTGGATCACGCCGACGACCCGGAGATGCGCGTGAGCCACGAGACGATCTACCAGTCGCTG
TTCGTGCAGGGCCGAGGCGAACTGCGCCGTGAGCTGGCGCGGTGCCTGCGGTCCGGAAGATCGGCCCGCAAGCCCCGCCGAACCACGGACGGTCGCGGCC
GCATCCCCGGCATGATCATGCTCAGCGAGCGCCCCGCAGAAGCCGACGACCGCGCCGTGCCAGGCCACTGGGAAGGTGATCTCATCCTCGACGAGGGTAG
CCGCAGCGCCATCGGCACACTCGTTGAGCGCTCGACGCGAATGACACTGCTGCTGCACCTGCCCGACGGCAAGAGCGCCGAGCAGGTCGAGGCCGCGATG
CGCGCCGCAATCAGCAAGCTGCCGTCCTCGTTGATCCGAACGATCACCTGGGACCAAGGCGCGGAGATGTCCAAGCACGCCGCGTTCTCCATCGCCACAG
GAATCCCGATCTACTTCTGCGATCCCCACTCGCCCTGGCAGCGGGGGAGCAACGAGAACACCAACGGCCTGCTGCGCCAGTACCTACCCAAAGGCACCGA
CCTGAGCGTCGTCAGCCGCGAGGAGTTGGACGCGATCCAGGACAGCCTCAACGGACGCCCCCGCAAGACGCTGGGCTATCTGACACCATCAGAGAAGCTC
GCAGAGTTCCTTGCGCCCATCGCTTGAATCCGCC
AGCAGAAGCAGCTCGCGCTCAGGCTGCACGGGAAGGGCTGGCGGCTGGTCGACATCGCGAAGGAGATCGGCTGCAGCGCGCCGATGGTCGGCATCATGGC
CCGCACCGGCAGGCACCTTGACGCCAGGCCGTTCGGGTGGGAGCCACGTCAGGGCTGTCTGACGATCGACGAGCGCGAGCAGATCCTGCTGGGCATCAAT
CGCGGCGATACCTTCACCGCGATCGCCGAGCAGCTGGGGCGTGCGGTGTCGACCGTCAGCCGTGAGGTGAAGCGCGGTGGGGGTCGCTGCGGCTACTCGG
CGTGGCGTGGTCATGAACGTGCCCGCGAGCAGGCGCGCCGACCGAAGCCGTTCAAGCTTGCGTCGGGCCGGCTGCTCGAGGAGGTTGCCAGCCGGCTGGA
GCAACTGTGGTCACCTGAGGAGATCGCGGCGCGCCTACGGTTGGATCACGCCGACGACCCGGAGATGCGCGTGAGCCACGAGACGATCTACCAGTCGCTG
TTCGTGCAGGGCCGAGGCGAACTGCGCCGTGAGCTGGCGCGGTGCCTGCGGTCCGGAAGATCGGCCCGCAAGCCCCGCCGAACCACGGACGGTCGCGGCC
GCATCCCCGGCATGATCATGCTCAGCGAGCGCCCCGCAGAAGCCGACGACCGCGCCGTGCCAGGCCACTGGGAAGGTGATCTCATCCTCGACGAGGGTAG
CCGCAGCGCCATCGGCACACTCGTTGAGCGCTCGACGCGAATGACACTGCTGCTGCACCTGCCCGACGGCAAGAGCGCCGAGCAGGTCGAGGCCGCGATG
CGCGCCGCAATCAGCAAGCTGCCGTCCTCGTTGATCCGAACGATCACCTGGGACCAAGGCGCGGAGATGTCCAAGCACGCCGCGTTCTCCATCGCCACAG
GAATCCCGATCTACTTCTGCGATCCCCACTCGCCCTGGCAGCGGGGGAGCAACGAGAACACCAACGGCCTGCTGCGCCAGTACCTACCCAAAGGCACCGA
CCTGAGCGTCGTCAGCCGCGAGGAGTTGGACGCGATCCAGGACAGCCTCAACGGACGCCCCCGCAAGACGCTGGGCTATCTGACACCATCAGAGAAGCTC
GCAGAGTTCCTTGCGCCCATCGCTTGAATCCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1158 bp | 385 aa | 70 | 1227 | + | No |
Chemistry : DDE
ORF sequence :
MQGRHGHLSREQKQLALRLHGKGWRLVDIAKEIGCSAPMVGIMARTGRHLDARPFGWEPRQGCLTIDEREQILLGINRGDTFTAIAEQLGRAVSTVSREV
KRGGGRCGYSAWRGHERAREQARRPKPFKLASGRLLEEVASRLEQLWSPEEIAARLRLDHADDPEMRVSHETIYQSLFVQGRGELRRELARCLRSGRSAR
KPRRTTDGRGRIPGMIMLSERPAEADDRAVPGHWEGDLILDEGSRSAIGTLVERSTRMTLLLHLPDGKSAEQVEAAMRAAISKLPSSLIRTITWDQGAEM
SKHAAFSIATGIPIYFCDPHSPWQRGSNENTNGLLRQYLPKGTDLSVVSREELDAIQDSLNGRPRKTLGYLTPSEKLAEFLAPIA
KRGGGRCGYSAWRGHERAREQARRPKPFKLASGRLLEEVASRLEQLWSPEEIAARLRLDHADDPEMRVSHETIYQSLFVQGRGELRRELARCLRSGRSAR
KPRRTTDGRGRIPGMIMLSERPAEADDRAVPGHWEGDLILDEGSRSAIGTLVERSTRMTLLLHLPDGKSAEQVEAAMRAAISKLPSSLIRTITWDQGAEM
SKHAAFSIATGIPIYFCDPHSPWQRGSNENTNGLLRQYLPKGTDLSVVSREELDAIQDSLNGRPRKTLGYLTPSEKLAEFLAPIA
Blast result :
Comments
ISPfr16 is 70% aa similar to ISBlo4.
References
1] ISfinder annotation (2009)