ISPfr16

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1234 bp

Ends


IR Length : 22/27

IRL : GGCGGATTCAAGCGGTCAGTGCAACGAGTCCTGTGAGATGAGGCAGTCAC
IRR : GGCGGATTCAAGCGATGGGCGCAAGGAACTCTGCGAGCTTCTCTGATGGT

Insertion site


Left flankDirect repeatRight flankDR Length
TCGGAGCAGCCCATCGAGTTCG0

DNA sequence

GGCGGATTCAAGCGGTCAGTGCAACGAGTCCTGTGAGATGAGGCAGTCACTGATCACAGGAGGATCCGGATGCAGGGCAGGCACGGTCATCTCAGCCGGG
AGCAGAAGCAGCTCGCGCTCAGGCTGCACGGGAAGGGCTGGCGGCTGGTCGACATCGCGAAGGAGATCGGCTGCAGCGCGCCGATGGTCGGCATCATGGC
CCGCACCGGCAGGCACCTTGACGCCAGGCCGTTCGGGTGGGAGCCACGTCAGGGCTGTCTGACGATCGACGAGCGCGAGCAGATCCTGCTGGGCATCAAT
CGCGGCGATACCTTCACCGCGATCGCCGAGCAGCTGGGGCGTGCGGTGTCGACCGTCAGCCGTGAGGTGAAGCGCGGTGGGGGTCGCTGCGGCTACTCGG
CGTGGCGTGGTCATGAACGTGCCCGCGAGCAGGCGCGCCGACCGAAGCCGTTCAAGCTTGCGTCGGGCCGGCTGCTCGAGGAGGTTGCCAGCCGGCTGGA
GCAACTGTGGTCACCTGAGGAGATCGCGGCGCGCCTACGGTTGGATCACGCCGACGACCCGGAGATGCGCGTGAGCCACGAGACGATCTACCAGTCGCTG
TTCGTGCAGGGCCGAGGCGAACTGCGCCGTGAGCTGGCGCGGTGCCTGCGGTCCGGAAGATCGGCCCGCAAGCCCCGCCGAACCACGGACGGTCGCGGCC
GCATCCCCGGCATGATCATGCTCAGCGAGCGCCCCGCAGAAGCCGACGACCGCGCCGTGCCAGGCCACTGGGAAGGTGATCTCATCCTCGACGAGGGTAG
CCGCAGCGCCATCGGCACACTCGTTGAGCGCTCGACGCGAATGACACTGCTGCTGCACCTGCCCGACGGCAAGAGCGCCGAGCAGGTCGAGGCCGCGATG
CGCGCCGCAATCAGCAAGCTGCCGTCCTCGTTGATCCGAACGATCACCTGGGACCAAGGCGCGGAGATGTCCAAGCACGCCGCGTTCTCCATCGCCACAG
GAATCCCGATCTACTTCTGCGATCCCCACTCGCCCTGGCAGCGGGGGAGCAACGAGAACACCAACGGCCTGCTGCGCCAGTACCTACCCAAAGGCACCGA
CCTGAGCGTCGTCAGCCGCGAGGAGTTGGACGCGATCCAGGACAGCCTCAACGGACGCCCCCGCAAGACGCTGGGCTATCTGACACCATCAGAGAAGCTC
GCAGAGTTCCTTGCGCCCATCGCTTGAATCCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1158 bp385 aa701227+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQGRHGHLSREQKQLALRLHGKGWRLVDIAKEIGCSAPMVGIMARTGRHLDARPFGWEPRQGCLTIDEREQILLGINRGDTFTAIAEQLGRAVSTVSREV
KRGGGRCGYSAWRGHERAREQARRPKPFKLASGRLLEEVASRLEQLWSPEEIAARLRLDHADDPEMRVSHETIYQSLFVQGRGELRRELARCLRSGRSAR
KPRRTTDGRGRIPGMIMLSERPAEADDRAVPGHWEGDLILDEGSRSAIGTLVERSTRMTLLLHLPDGKSAEQVEAAMRAAISKLPSSLIRTITWDQGAEM
SKHAAFSIATGIPIYFCDPHSPWQRGSNENTNGLLRQYLPKGTDLSVVSREELDAIQDSLNGRPRKTLGYLTPSEKLAEFLAPIA

 

Blast result :
Comments
ISPfr16 is 70% aa similar to ISBlo4.
References
1] ISfinder annotation (2009)