ISPfr14

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1490 bp

Ends


IR Length : 20/22

IRL : TTCAACTGGTCGTCGCAACACCTTGACGTGGAAGGTGTTGGCGATGGCAG
IRR : TTCAACCAGTCGTTGCAACACCGGCTTGTTCGAGTGATCGTAGTTGCTCG

Insertion site


Left flankDirect repeatRight flankDR Length
ACGCCGGATCCCAAGGCGGACCTGCCCAATACACATCCGT0

DNA sequence

TTCAACTGGTCGTCGCAACACCTTGACGTGGAAGGTGTTGGCGATGGCAGCGAACGACAGGGACCAGAGCACGAGGGACGCGCCACAGGTGTTGCGGCGC
CAGTGGCGTGCAGATCGAGCGTTGCGCCCACCGATGCGTTCCCCTGGGCGCCCACGCCAGTCACCTTCGCGGCGAGTCGAACGGCAGTTTTGGCGCCAGA
TCGCCACGGGCGTCACAACGGCGGAAGCCTCCCTCGCGGTCGGCGTGTCGTGCCCCGTCGGTGCGCGCTGGTTTCGACACGCTGGCGGCATGCCACCGAT
CAGCCTGGCCGAGCCGTCCGGGCGCTATCTCAGTTTCGAAGAACGTGAAGAGATCGCGATCCTGAACGCCAAAGGCGTCGGCGTGCGCGCGATCGCTCGC
CAGCTGGGGCGTGATGCAGGCACGATCAGCCGTGAACTACGCCGTAACGCCGCCACCCGTAGCGGCCGAATCGAGTACCGGGCCACGGTCGCGCAGTGGA
AAGCGCAAGAAGCAGCGAAACGCCCGAAGATCGCGAAGTTGGTTAGGAACGAGCGTCTACGCGACTACGTCCAAGACCGCCTTGCCGGCGGGGTCACCCA
TCCTGACGGCACGCCCGTGGCGGGCCCGGCCGCGCCGGCGTGGAAGGGGTTGAACAAGCCGCGCAGGCAGGATCGGCGCTGGGCCAGTTCGTGGAGCCCG
GAGCAGATCAGTCATCGGCTGCGGTTGGACTTCCCCGATGATGAGTCCATGCGCATCAGCCATGAGGCGATCTATCAGTCGTTGTTCATCGAAGGGCGCG
GCGCGTTGAAACGCGAACTCGTCGCCTGTCTGCGCACCGGCCGCGCGTTGCGTGAACCGCGGGAGCGTTCACGGAACAAGCCCCAGGGCCATGTCAGCGC
TGAGGTGGTCATCAGCCAGCGGCCCGCCGAAGCGCAAGACCGTGCCGTGCCAGGCCATTGGGAGGGCGACCTCATCATCGGTACCGGCCGCTCCGCGATC
GGCACGCTCGTCGAGCGTCGTAGCCGCACCACGATCCTCGTACATCTTCCTCGACTTGAAGGCTGGGGTGAGCAGCCGCCGGTAAAGAAAGGCCCGTCGC
TGGGCGGCTACGGCGCGCAGGCGATGAACAAGGCGTTGAGCGCGTCGATCACGTCGCTTCCGCAGCAAGTGCGTCAGACGATCACGTGGGATCGGGGTAA
GGAACTGTCCGGGCACGCCCAGTTCACGCTGGAGACCGGCACGCGCGTGTTCTTCGCCGACCCGCACTCGCCGTGGCAGCGACCGACGAACGAGAACACC
AACGGTGTGCTGCGCCAGTACTTCCCCAAGGGCACTGACCTGTCCCGATGGAGCGCGAACGACCTTGAAGCTGTCGCTCACACCCTCAACAACCGGCCAC
GCAAAGTCCTCGGCTGGCGAACCCCCGCAGAGGTCTTCGACGAGCAACTACGATCACTCGAACAAGCCGGTGTTGCAACGACTGGTTGAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1200 bp399 aa2901489+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPPISLAEPSGRYLSFEEREEIAILNAKGVGVRAIARQLGRDAGTISRELRRNAATRSGRIEYRATVAQWKAQEAAKRPKIAKLVRNERLRDYVQDRLAG
GVTHPDGTPVAGPAAPAWKGLNKPRRQDRRWASSWSPEQISHRLRLDFPDDESMRISHEAIYQSLFIEGRGALKRELVACLRTGRALREPRERSRNKPQG
HVSAEVVISQRPAEAQDRAVPGHWEGDLIIGTGRSAIGTLVERRSRTTILVHLPRLEGWGEQPPVKKGPSLGGYGAQAMNKALSASITSLPQQVRQTITW
DRGKELSGHAQFTLETGTRVFFADPHSPWQRPTNENTNGVLRQYFPKGTDLSRWSANDLEAVAHTLNNRPRKVLGWRTPAEVFDEQLRSLEQAGVATTG

 

Blast result :
Comments
ISPfr14 is 89% aa similar to ISPfr9.
References
1] ISfinder annotation (2009)