ISPfr10
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1247 bp
Ends
IR Length : 34/44
IRL : TGGGCTGACCCCGTTTTTTAGGTCCGGTGGTTCTGGGAGTCGTCCTGTCG
IRR : TGGGCCGCCCCCTTCATTCGGTCCGGTCGCTCTGTGAGTCGTCGGTTTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTAGCCAGGC | CTCGGTGGCT | 0 | |
CCGAACGGCT | CATG | CGCCAGCGGC | 4 |
ATGTCCGAAA | CCAC | CAGGGTGTGG | 4 |
CAGCCCCTCG | CACTGACCAA | 0 | |
AGCCGCGCTC | CGCA | CAAGGAAGAG | 4 |
GGCTCGTGTC | CTGG | CGCCACACAT | 4 |
CACATCCTCG | AGGCTGCCTC | 0 | |
CTCGAATGGG | GGGT | CCCTTCTTAG | 4 |
DNA sequence
TGGGCTGACCCCGTTTTTTAGGTCCGGTGGTTCTGGGAGTCGTCCTGTCGCCCGTGGTTGCGGGCAGGGAGACTGGTCAGATCATGTCGAACAGCAGGAA
GCGTCACACCCCGGAGCAGGTCGTCCGCAAGCTCGGGCAGGCCGACAGGATGCTCGCCGACGGCAGCGACATCGCCGCGGTGTGTCGGGAGCTTGGGATA
TCCGAGCAGACGTATTACCGGTGGCGTAACCAGTACGGCGGACTGAAGGCCGACGACGCGAAGCGCCTCAGGGAGCTGGAGAAGCAGAACGCCACGCTCA
AGCGGTTGCTGGCCGAAGCGGAGCTGGAGAAGGCTGCGCTCAAGGAGCTGGCCGAGGGAAACTTCTAGGCCCGGGCAGGCGCCGCGCCGCCGTCTCGCAC
CTGATCAGGACACTGCAGGTGAGCGAGCGGATGGCGTGCCGTCTGGCCGGGCTGAGCAGGTCCGCGTACCGTCGCCCGCTCAAGGGCGACACGGTCGCCG
ACCCTGATCGCGCGTTGCGAGACTGGCTGCGCGCGTGGGCGAAGAAGCATCCCCGCTACGGGTACCGGCGGGCGTATCACGACGCCCGGGGTGAGGGCTG
GGCGGTCAACCACAAGAAGATCCAACGCCTCTGGCGAGCCGAAGGCCTCCGCGTCCCGCAGCGGCGACGCCGCAAGCGTGTCGGATCCTCGACCGTCGAC
GCCCCGGCGGCGGTCGCACCGAACCTCGTATGGGCGGTGGACTTCCAGTTCGACGCCGACGAGCGGGGCTGCCCGATCAAGATCTGCTCCATCGTCGACG
AGCACACCCGCGAATGCATCGGCGGGCTCGTGGAGCGGTCGATCACCGCCGACCGGCTCACCGCCCACCTCGAAGAGCTCGTCGCCGTCCGCGGTGCACC
GGGTGTGCTCCGCAGCGACAACGGGCCCGAGTTCATCAGCGACGCGATGGCCGACTGGGCGGGTACCCGCACCGGCCTGTTCTACATTCCGCCCGGCTCG
CCCTGGCACAACGGATACGTCGAATCGTTCAACAGCCGCCTCCGCGACGAGTGCCTCAACATCAACAGCTTCTACTCACTGCTGCACGCTCAGGTCGTGA
TCGGCGACTGGAAGACCGAGTACAACCATCAGCGTCGGCACTCATCGCTCGGCTACCTACCCCCGGCCGAGTACGCTCGGCAGTGCACCCATCAAATCGA
AACCGACGACTCACAGAGCGACCGGACCGAATGAAGGGGGCGGCCCA
GCGTCACACCCCGGAGCAGGTCGTCCGCAAGCTCGGGCAGGCCGACAGGATGCTCGCCGACGGCAGCGACATCGCCGCGGTGTGTCGGGAGCTTGGGATA
TCCGAGCAGACGTATTACCGGTGGCGTAACCAGTACGGCGGACTGAAGGCCGACGACGCGAAGCGCCTCAGGGAGCTGGAGAAGCAGAACGCCACGCTCA
AGCGGTTGCTGGCCGAAGCGGAGCTGGAGAAGGCTGCGCTCAAGGAGCTGGCCGAGGGAAACTTCTAGGCCCGGGCAGGCGCCGCGCCGCCGTCTCGCAC
CTGATCAGGACACTGCAGGTGAGCGAGCGGATGGCGTGCCGTCTGGCCGGGCTGAGCAGGTCCGCGTACCGTCGCCCGCTCAAGGGCGACACGGTCGCCG
ACCCTGATCGCGCGTTGCGAGACTGGCTGCGCGCGTGGGCGAAGAAGCATCCCCGCTACGGGTACCGGCGGGCGTATCACGACGCCCGGGGTGAGGGCTG
GGCGGTCAACCACAAGAAGATCCAACGCCTCTGGCGAGCCGAAGGCCTCCGCGTCCCGCAGCGGCGACGCCGCAAGCGTGTCGGATCCTCGACCGTCGAC
GCCCCGGCGGCGGTCGCACCGAACCTCGTATGGGCGGTGGACTTCCAGTTCGACGCCGACGAGCGGGGCTGCCCGATCAAGATCTGCTCCATCGTCGACG
AGCACACCCGCGAATGCATCGGCGGGCTCGTGGAGCGGTCGATCACCGCCGACCGGCTCACCGCCCACCTCGAAGAGCTCGTCGCCGTCCGCGGTGCACC
GGGTGTGCTCCGCAGCGACAACGGGCCCGAGTTCATCAGCGACGCGATGGCCGACTGGGCGGGTACCCGCACCGGCCTGTTCTACATTCCGCCCGGCTCG
CCCTGGCACAACGGATACGTCGAATCGTTCAACAGCCGCCTCCGCGACGAGTGCCTCAACATCAACAGCTTCTACTCACTGCTGCACGCTCAGGTCGTGA
TCGGCGACTGGAAGACCGAGTACAACCATCAGCGTCGGCACTCATCGCTCGGCTACCTACCCCCGGCCGAGTACGCTCGGCAGTGCACCCATCAAATCGA
AACCGACGACTCACAGAGCGACCGGACCGAATGAAGGGGGCGGCCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
285 bp | 94 aa | 84 | 368 | + | No |
Description : First part of the transposase
ORF sequence :
MSNSRKRHTPEQVVRKLGQADRMLADGSDIAAVCRELGISEQTYYRWRNQYGGLKADDAKRLRELEKQNATLKRLLAEAELEKAALKELAEGNF
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1005 bp | 334 aa | 230 | 1234 | + | No |
Description : Second part of the transposase
ORF sequence :
PVRRTEGRRREAPQGAGEAERHAQAVAGRSGAGEGCAQGAGRGKLLGPGRRRAAVSHLIRTLQVSERMACRLAGLSRSAYRRPLKGDTVADPDRALRDWL
RAWAKKHPRYGYRRAYHDARGEGWAVNHKKIQRLWRAEGLRVPQRRRRKRVGSSTVDAPAAVAPNLVWAVDFQFDADERGCPIKICSIVDEHTRECIGGL
VERSITADRLTAHLEELVAVRGAPGVLRSDNGPEFISDAMADWAGTRTGLFYIPPGSPWHNGYVESFNSRLRDECLNINSFYSLLHAQVVIGDWKTEYNH
QRRHSSLGYLPPAEYARQCTHQIETDDSQSDRTE
RAWAKKHPRYGYRRAYHDARGEGWAVNHKKIQRLWRAEGLRVPQRRRRKRVGSSTVDAPAAVAPNLVWAVDFQFDADERGCPIKICSIVDEHTRECIGGL
VERSITADRLTAHLEELVAVRGAPGVLRSDNGPEFISDAMADWAGTRTGLFYIPPGSPWHNGYVESFNSRLRDECLNINSFYSLLHAQVVIGDWKTEYNH
QRRHSSLGYLPPAEYARQCTHQIETDDSQSDRTE
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1151 bp | 383 aa | 84 | 1234 | + | Yes |
Chemistry : DDE
ORF sequence :
MSNSRKRHTPEQVVRKLGQADRMLADGSDIAAVCRELGISEQTYYRWRNQYGGLKADDAKRLRELEKQNATLKRLLAEAELEKAALKELAEGKLLGPGRR
RAAVSHLIRTLQVSERMACRLAGLSRSAYRRPLKGDTVADPDRALRDWLRAWAKKHPRYGYRRAYHDARGEGWAVNHKKIQRLWRAEGLRVPQRRRRKRV
GSSTVDAPAAVAPNLVWAVDFQFDADERGCPIKICSIVDEHTRECIGGLVERSITADRLTAHLEELVAVRGAPGVLRSDNGPEFISDAMADWAGTRTGLF
YIPPGSPWHNGYVESFNSRLRDECLNINSFYSLLHAQVVIGDWKTEYNHQRRHSSLGYLPPAEYARQCTHQIETDDSQSDRTE
RAAVSHLIRTLQVSERMACRLAGLSRSAYRRPLKGDTVADPDRALRDWLRAWAKKHPRYGYRRAYHDARGEGWAVNHKKIQRLWRAEGLRVPQRRRRKRV
GSSTVDAPAAVAPNLVWAVDFQFDADERGCPIKICSIVDEHTRECIGGLVERSITADRLTAHLEELVAVRGAPGVLRSDNGPEFISDAMADWAGTRTGLF
YIPPGSPWHNGYVESFNSRLRDECLNINSFYSLLHAQVVIGDWKTEYNHQRRHSSLGYLPPAEYARQCTHQIETDDSQSDRTE
Blast result :
Comments
ISPfr10 is 95% aa similar to ISAar43. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] ISfinder annotation (2009)