ISPfr8

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1436 bp

Ends


IR Length : 29/38

IRL : GGCTCTTCGCGATCCGGGGTGTAGCGGGGGGTTGAGTCTGGCTGGCGTGT
IRR : GGCTCTTCACGATTGAGGGTGTAGTTGGGGTCTGAATCCTCCGGCCTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
CCTCATGCGCGAATTCCCGAACCTGTACA8
CGCCGTTCCGGGATATCACTACGAAACGTCCGGCCGGGTC0
ATTTCCCGACGCAGATCACGGAGGTGAGACCA8

DNA sequence

GGCTCTTCGCGATCCGGGGTGTAGCGGGGGGTTGAGTCTGGCTGGCGTGTCGGGGTGGGTGTGAGGGTCGGGGTCTTCCGATGATGGGAGTTCCTACGCT
GCCCATCTGAAAGACCCCGACGTGTCCCACGCTACCTTTGCTGCCCCCGATCTGACCACGTTCGCCCGCCTGGATGACCTCGGCCTCGTGGTGGTGGGCC
AGAGAGTCCTCCCGGATCGCTGCGAGGTGGCCTGCCGGGTGGTGGACGATGACCGGTGGTGTCGCGAGTGTGGGTGCGAAGGGATCCCCCGCGACACCGT
GGTCCGTCGCCTCGCCCACGAGCCCTCGGGCTGGAGACCGGTGACACTGGTGGTGCGAGTGCGTCGCTACCGCTGTTCGGGGTGTGGGCGTGTGTGGAGG
CAGGACACCACTGGGGCGGCCCAGCCGCGCTCGAAACTGTCCCGGGGCGGACTGGGTTGGGCCCGTGGCGGGCATCGTCGTCCAACACCTCACCGTCGCC
CGGGTCGCTGAGGGTCTGGGCGTGTCCTGGGACTGCGCCAACACCTCCGTCCTGGAGGAGGGACGCAGGGTCCTCATCAACGATGAGCATCGCTTCGAGG
GTGTGACCACGATCGGGGTGGACGAGCACGTGTGGCGGCACACGCGCAGGGGCGACAAGTTCGTCACCGTGATCATCGACCTCACCCCGCTGCGCGAGGG
AAGGGGTCCTGCCAGGTTGTTGGACATGGTGGAGGGCCGCTCCAAGAAGGCCTTCAAGGAGTGGCTCAGCCAGCAAGACCCTGCGTGGCGCGACCGGATT
GAGGTGGTCGCCATGGACGGCTTCACCGGGTTCAAGACCGCAGCGAAGGAAGAACTCCCCGACGCGGTGGAGGTCATGGATCCCTTCCACGTCGTCCAGC
TCGCCGGCGATGCCCTGGACCACTGCCGCCAGCGCGTCCAGCAAGACACCACCGGACATCGAGGCCGGTCCGGGGACCCCCTGTACGGGGTGCGCAAGAC
CCTGCACACCGGGATGGATCTCCTCACAGAAAAGCAACGCACCCGCCTGGAGGGCGTCTTCGCCCAGGACGCTCACGTCGGGGTGGAAGCCACCTGGGGC
ATCTACCAGAAGATCGTGGCCGCCTACCGCGATCCCGACCCCAAGGCCGGGCGAGCCCAGCTGGCCCACGTCATCGAGGTCATCAGCCGCGGCGTTCCCG
CCGCCCTCGCTGAGATCATCACCCTGGGGCGCACCCTCAAGCGGCGCGCCACAGACGTCCTGGCCTACTTCGAGCGCCCCCACACCTCCAACGGCCCGAC
AGAAGCCCTCAATGGCCGACTGGAACACCTGCGCGGCTCAGCCTTGGGCTTCCGAAACCTGACGAACTACATTGCCCGCAGTCTCCTCGAGGCCGGAGGA
TTCAGACCCCAACTACACCCTCAATCGTGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1309 bp435 aa1221430+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

VSHATFAAPDLTTFARLDDLGLVVVGQRVLPDRCEVACRVVDDDRWCRECGCEGIPRDTVVRRLAHEPSGWRPVTLVVRVRRYRCSGCGRVWRQDTTGAA
QPRSKLSRGGLGWARGGIVVQHLTVARVAEGLGVSWDCANTSVLEEGRRVLINDEHRFEGVTTIGVDEHVWRHTRRGDKFVTVIIDLTPLREGRGPARLL
DMVEGRSKKAFKEWLSQQDPAWRDRIEVVAMDGFTGFKTAAKEELPDAVEVMDPFHVVQLAGDALDHCRQRVQQDTTGHRGRSGDPLYGVRKTLHTGMDL
LTEKQRTRLEGVFAQDAHVGVEATWGIYQKIVAAYRDPDPKAGRAQLAHVIEVISRGVPAALAEIITLGRTLKRRATDVLAYFERPHTSNGPTEALNGRL
EHLRGSALGFRNLTNYIARSLLEAGGFRPQLHPQS

 

Blast result :
Comments
ISPfr8 is 84% aa similar to ISPfr3. The transposase was reconstructed in silico, there is a frameshift induced by insertion of a G at position 472 (DNA).
References
1] ISfinder annotation (2009)