ISPfr7
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1423 bp
Ends
IR Length : 23/27
IRL : GGCTCTTCACAGATGAGGGTGTAGGTCGGTAGCGGGACCCGGGTGGTGAC
IRR : GGCTCTTCACAATCCAGGGTGTAGATCTGGTCTGAACCCGCCGGCTTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCGGAGCACGAGGTTTCCAAGGCTATGGC | AGCATTGCTCGATCCGGGTGAAGGCCTCGC | 0 |
DNA sequence
GGCTCTTCACAGATGAGGGTGTAGGTCGGTAGCGGGACCCGGGTGGTGACAGGGATCGAGGTCCCCTGATGATGGAAGTTCCTACGCTCGCCATCCAGAA
GACCTCGACATGGACAACGCTACCTTCACCACCCCTGACCTGACCACGTTCTGCCGTCTCGATGACCTGGGCCTGGCCGTCACTGGTCAGCACCTCGGCC
CGCAGCGAGCCACACTGCTGGGCCGCCCGACCGGGCTCGATGACTGGTGCCACCGCTGCGGCTGCCACGGCCAGCCGCGTGACAGTGTCGTGCGAGAGTT
GGCGCACATCCCGTTCGGCTGGCGTCCCACCACCCTCCAGGTTCGGCTGCGCCGCTACCAGTGCACCGGCTGCGGGCATGTCTGGCGCCAGGACCTCACC
GGCGCAGCGTCGCCGCGTTCCTGCTTGTCACGAGGTGCATTGCGGTGGGCGCTGGAAGCGCTGGTGGTCAACCACCTGTCCATGACGCGCATCGCGGCCG
CGCTGGGGGTGGCGTGGAACACCGCCAACGACGCCGTCCTCGCCGAAGGCCAGCGGATGCTCATCGACTCCCCCGGCCGCCTCGATGGCGTGACCGTCGT
GGGCGTCGACGAGCACGTGTGGCGCCACACCCGCCGCGGCGACAAGTACGTCACCGTGGTCAGCGACCTGACCCCCGTCAGCACCGGGACCGGAGCGTCG
CGGTTGTCGGCGATGGTCGAGGGGCGTTCGAAGCAGGCGTTCAAGACGTGGCTGTCGCAGCAGCCCCAGACCTGGAGAGACGGAGTGAAGATCGTCGCGA
TGGACGGGTTCACCGGCTTCAAGACCGTCGTCGCCGAAGAACTGCCGAAAGCTGCCACGGTGATGGATCCCTTCCATGTCATCCGGCTCGCTGGGGATGC
TCTGGATGTGTGCCGCAGGCGGGTCCAGGTATCGCTGCACGGCAGTCGGGGGCGCAAGCACCATCCGCTCTACCAAGCACGGCGAACGCTTCACACCGGC
GCTGATCTACTTACTGACAAGCAACAACGCCGCCTGAATGCCCTGTTCGCTGATGACCGGCACGTTGAGGTCGAGGCCACTTGGGGCGTCTACCAGGCCA
TGATCTCGGCCTACCGCACCAAGGCCCGCAGCGACGGCAAGAAGGCCCTGGCCAGACTGATCGACTCGATCGGATCAGCGGTTCCCACCCGCCTGGTCGA
GGTTTGCAAGCTCGGCCGCACCCTGACCAAACGACGCGACGACATCCTGGCGTTCTTCGACCACACCGGCTCGAGCAACGGCCCCACCGAGGCGATCAAC
GGCCGGCTCGAACACCTCCGAGGCACCGCTCTCGGCTTCCGCAACCTCACCCACTACATCGCCCGATCACTACTCGAAGCCGGCGGGTTCAGACCAGATC
TACACCCTGGATTGTGAAGAGCC
GACCTCGACATGGACAACGCTACCTTCACCACCCCTGACCTGACCACGTTCTGCCGTCTCGATGACCTGGGCCTGGCCGTCACTGGTCAGCACCTCGGCC
CGCAGCGAGCCACACTGCTGGGCCGCCCGACCGGGCTCGATGACTGGTGCCACCGCTGCGGCTGCCACGGCCAGCCGCGTGACAGTGTCGTGCGAGAGTT
GGCGCACATCCCGTTCGGCTGGCGTCCCACCACCCTCCAGGTTCGGCTGCGCCGCTACCAGTGCACCGGCTGCGGGCATGTCTGGCGCCAGGACCTCACC
GGCGCAGCGTCGCCGCGTTCCTGCTTGTCACGAGGTGCATTGCGGTGGGCGCTGGAAGCGCTGGTGGTCAACCACCTGTCCATGACGCGCATCGCGGCCG
CGCTGGGGGTGGCGTGGAACACCGCCAACGACGCCGTCCTCGCCGAAGGCCAGCGGATGCTCATCGACTCCCCCGGCCGCCTCGATGGCGTGACCGTCGT
GGGCGTCGACGAGCACGTGTGGCGCCACACCCGCCGCGGCGACAAGTACGTCACCGTGGTCAGCGACCTGACCCCCGTCAGCACCGGGACCGGAGCGTCG
CGGTTGTCGGCGATGGTCGAGGGGCGTTCGAAGCAGGCGTTCAAGACGTGGCTGTCGCAGCAGCCCCAGACCTGGAGAGACGGAGTGAAGATCGTCGCGA
TGGACGGGTTCACCGGCTTCAAGACCGTCGTCGCCGAAGAACTGCCGAAAGCTGCCACGGTGATGGATCCCTTCCATGTCATCCGGCTCGCTGGGGATGC
TCTGGATGTGTGCCGCAGGCGGGTCCAGGTATCGCTGCACGGCAGTCGGGGGCGCAAGCACCATCCGCTCTACCAAGCACGGCGAACGCTTCACACCGGC
GCTGATCTACTTACTGACAAGCAACAACGCCGCCTGAATGCCCTGTTCGCTGATGACCGGCACGTTGAGGTCGAGGCCACTTGGGGCGTCTACCAGGCCA
TGATCTCGGCCTACCGCACCAAGGCCCGCAGCGACGGCAAGAAGGCCCTGGCCAGACTGATCGACTCGATCGGATCAGCGGTTCCCACCCGCCTGGTCGA
GGTTTGCAAGCTCGGCCGCACCCTGACCAAACGACGCGACGACATCCTGGCGTTCTTCGACCACACCGGCTCGAGCAACGGCCCCACCGAGGCGATCAAC
GGCCGGCTCGAACACCTCCGAGGCACCGCTCTCGGCTTCCGCAACCTCACCCACTACATCGCCCGATCACTACTCGAAGCCGGCGGGTTCAGACCAGATC
TACACCCTGGATTGTGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1308 bp | 435 aa | 110 | 1417 | + | No |
Chemistry : Unknow
ORF sequence :
MDNATFTTPDLTTFCRLDDLGLAVTGQHLGPQRATLLGRPTGLDDWCHRCGCHGQPRDSVVRELAHIPFGWRPTTLQVRLRRYQCTGCGHVWRQDLTGAA
SPRSCLSRGALRWALEALVVNHLSMTRIAAALGVAWNTANDAVLAEGQRMLIDSPGRLDGVTVVGVDEHVWRHTRRGDKYVTVVSDLTPVSTGTGASRLS
AMVEGRSKQAFKTWLSQQPQTWRDGVKIVAMDGFTGFKTVVAEELPKAATVMDPFHVIRLAGDALDVCRRRVQVSLHGSRGRKHHPLYQARRTLHTGADL
LTDKQQRRLNALFADDRHVEVEATWGVYQAMISAYRTKARSDGKKALARLIDSIGSAVPTRLVEVCKLGRTLTKRRDDILAFFDHTGSSNGPTEAINGRL
EHLRGTALGFRNLTHYIARSLLEAGGFRPDLHPGL
SPRSCLSRGALRWALEALVVNHLSMTRIAAALGVAWNTANDAVLAEGQRMLIDSPGRLDGVTVVGVDEHVWRHTRRGDKYVTVVSDLTPVSTGTGASRLS
AMVEGRSKQAFKTWLSQQPQTWRDGVKIVAMDGFTGFKTVVAEELPKAATVMDPFHVIRLAGDALDVCRRRVQVSLHGSRGRKHHPLYQARRTLHTGADL
LTDKQQRRLNALFADDRHVEVEATWGVYQAMISAYRTKARSDGKKALARLIDSIGSAVPTRLVEVCKLGRTLTKRRDDILAFFDHTGSSNGPTEAINGRL
EHLRGTALGFRNLTHYIARSLLEAGGFRPDLHPGL
Blast result :
Comments
ISPfr7 is 78% aa siilar to ISPfr1.
References
1] ISfinder annotation (2009)