ISPfr7

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1423 bp

Ends


IR Length : 23/27

IRL : GGCTCTTCACAGATGAGGGTGTAGGTCGGTAGCGGGACCCGGGTGGTGAC
IRR : GGCTCTTCACAATCCAGGGTGTAGATCTGGTCTGAACCCGCCGGCTTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
ATCGGAGCACGAGGTTTCCAAGGCTATGGCAGCATTGCTCGATCCGGGTGAAGGCCTCGC0

DNA sequence

GGCTCTTCACAGATGAGGGTGTAGGTCGGTAGCGGGACCCGGGTGGTGACAGGGATCGAGGTCCCCTGATGATGGAAGTTCCTACGCTCGCCATCCAGAA
GACCTCGACATGGACAACGCTACCTTCACCACCCCTGACCTGACCACGTTCTGCCGTCTCGATGACCTGGGCCTGGCCGTCACTGGTCAGCACCTCGGCC
CGCAGCGAGCCACACTGCTGGGCCGCCCGACCGGGCTCGATGACTGGTGCCACCGCTGCGGCTGCCACGGCCAGCCGCGTGACAGTGTCGTGCGAGAGTT
GGCGCACATCCCGTTCGGCTGGCGTCCCACCACCCTCCAGGTTCGGCTGCGCCGCTACCAGTGCACCGGCTGCGGGCATGTCTGGCGCCAGGACCTCACC
GGCGCAGCGTCGCCGCGTTCCTGCTTGTCACGAGGTGCATTGCGGTGGGCGCTGGAAGCGCTGGTGGTCAACCACCTGTCCATGACGCGCATCGCGGCCG
CGCTGGGGGTGGCGTGGAACACCGCCAACGACGCCGTCCTCGCCGAAGGCCAGCGGATGCTCATCGACTCCCCCGGCCGCCTCGATGGCGTGACCGTCGT
GGGCGTCGACGAGCACGTGTGGCGCCACACCCGCCGCGGCGACAAGTACGTCACCGTGGTCAGCGACCTGACCCCCGTCAGCACCGGGACCGGAGCGTCG
CGGTTGTCGGCGATGGTCGAGGGGCGTTCGAAGCAGGCGTTCAAGACGTGGCTGTCGCAGCAGCCCCAGACCTGGAGAGACGGAGTGAAGATCGTCGCGA
TGGACGGGTTCACCGGCTTCAAGACCGTCGTCGCCGAAGAACTGCCGAAAGCTGCCACGGTGATGGATCCCTTCCATGTCATCCGGCTCGCTGGGGATGC
TCTGGATGTGTGCCGCAGGCGGGTCCAGGTATCGCTGCACGGCAGTCGGGGGCGCAAGCACCATCCGCTCTACCAAGCACGGCGAACGCTTCACACCGGC
GCTGATCTACTTACTGACAAGCAACAACGCCGCCTGAATGCCCTGTTCGCTGATGACCGGCACGTTGAGGTCGAGGCCACTTGGGGCGTCTACCAGGCCA
TGATCTCGGCCTACCGCACCAAGGCCCGCAGCGACGGCAAGAAGGCCCTGGCCAGACTGATCGACTCGATCGGATCAGCGGTTCCCACCCGCCTGGTCGA
GGTTTGCAAGCTCGGCCGCACCCTGACCAAACGACGCGACGACATCCTGGCGTTCTTCGACCACACCGGCTCGAGCAACGGCCCCACCGAGGCGATCAAC
GGCCGGCTCGAACACCTCCGAGGCACCGCTCTCGGCTTCCGCAACCTCACCCACTACATCGCCCGATCACTACTCGAAGCCGGCGGGTTCAGACCAGATC
TACACCCTGGATTGTGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1101417+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MDNATFTTPDLTTFCRLDDLGLAVTGQHLGPQRATLLGRPTGLDDWCHRCGCHGQPRDSVVRELAHIPFGWRPTTLQVRLRRYQCTGCGHVWRQDLTGAA
SPRSCLSRGALRWALEALVVNHLSMTRIAAALGVAWNTANDAVLAEGQRMLIDSPGRLDGVTVVGVDEHVWRHTRRGDKYVTVVSDLTPVSTGTGASRLS
AMVEGRSKQAFKTWLSQQPQTWRDGVKIVAMDGFTGFKTVVAEELPKAATVMDPFHVIRLAGDALDVCRRRVQVSLHGSRGRKHHPLYQARRTLHTGADL
LTDKQQRRLNALFADDRHVEVEATWGVYQAMISAYRTKARSDGKKALARLIDSIGSAVPTRLVEVCKLGRTLTKRRDDILAFFDHTGSSNGPTEAINGRL
EHLRGTALGFRNLTHYIARSLLEAGGFRPDLHPGL

 

Blast result :
Comments
ISPfr7 is 78% aa siilar to ISPfr1.
References
1] ISfinder annotation (2009)