ISPfr6
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1436 bp
Ends
IR Length : 23/24
IRL : GGCTCATCACAATCCACGGTGTAGTGGGGGTGTGATGGTGGCTGGCGTGT
IRR : GGCTCATCATAATCCACGGTGTAGCTGAGGTCTGAACCCGCCGGTTTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACTGACATTGGTGGCCGCGGACCTATGGG | GGTATTCACAGATGCCCATCGTGCGCTCTG | 0 | |
ACACGCACTCTGCGAGGACGATCTGATCCT | CCTATGGGTACTGGCCATGGCCTACGGGCC | 0 | |
GCCGTGGGAGAGCTCCTGGAGCGGTATTCA | CAGCTCGGCGAGCATTCCTGGAAGCGCGGA | 0 |
DNA sequence
GGCTCATCACAATCCACGGTGTAGTGGGGGTGTGATGGTGGCTGGCGTGTCGGTCACCGGGTAGGGGTCGAGGCCTTCCGAGGATGGGGGTTCTCACACC
AACCCATCGGGAAGACCTCGACGTGCCTGACGCTACCTTCGCGACCCCTGACCTGACCACCTTCTGCCGGCTCGACGAGCTGGGCCTGGTTGCGGTTGGT
CAACGACTCGAGCCTGGACGGGCGGTGATCGCTTGTCAGGTTGTCGAGCCGGACGACTGGTGCCACCGCTGCGGCCAGCATGGTGTGTTGCGGGACACGG
TGGTGCGTCGGCTCGCTCACGAACCGCTCGGGTGGCGGCCGACCCTGCTGGAGGTGCTCGTCCGCCGGTACCGGTGCGCCGACTGCGCTCATGTGTGGCG
CCAGGACACGAGCCGGGCCGCGGAGGCCAAGACCCGACTGTCGCGCCGCGGGCTGCGGTGGGCGTTGGAAGGGATCGTGGTGCGCCACCTCACCGTGGCC
CGGATCGCCGAAGGCTTGGACATCAGCTGGAACACAGCGAACGACGCGGTGCTCGCCGAGGGTAAGCGGGTGCTGATCAACAACCCGCACCGGTTCGACA
AGGTGACCACGATCGGCGTGGATGAGCACGTGTGGCGGCACACCCGTCGCGGCGAGAAGTACGTGACCGTGATCATCGACCTGACGCCGGCAAGGACGAA
CAGTGGACCGGTCAGGTTGCTGGACATGGTCGAGGGCCGCTCCAAGAGCGTGTTCAAGCAGTGGTTGTCTGAGCGTGACCAGGCGTGGCGCGACCGGGTG
GAGGTCGTCGCGATGGACGGCTTCACCGGATTCAAGACCGCCACTACCGAGGAGTTGCCTGATGCGGTCGCGGTGATGGACCCCTTCCATGTCGTGAGGC
TCGCCGGCGACGCCCTCGACCGGTGCCGCCGTCGAATCCAACAGGATCTGCACGGCCACCGCGGCCGTGCCGGCGACCCGCTCTACTCGGCCCGGCGAAC
CCTGCACACCGGAGCATCGCTGCTCACCGACAAACAGAAGACCCGGCTTGACGCCCTGTTCGCTGACGAGGCGCACACCGAACTTGAGGTCACCTGGGCG
GCCTACCAACGCATGGTCACCGCCTACCGCGACCCCGACCCTGCTCGCGGCCGAGACCTCATGAACAAGCTCATCGCCAGCCTCGCCAGCGGCGTCCCAG
CAGCGCTGGTCGAACTCCGCACACTGGGCCGCACGCTGAAGCAGCGGGCGGTCGACGTGCTGGCCTACTTCGACCGGCCCGGCACCAGCAACGGTCCCAC
AGAGGCGATCAATGGCCGCCTCGAGCACCTCCGCGGATCAGCCCTCGGCTTCCGCAACCTCACCCACTATGTCGCCAGATCCCTCCTCGAAACCGGCGGG
TTCAGACCTCAGCTACACCGTGGATTATGATGAGCC
AACCCATCGGGAAGACCTCGACGTGCCTGACGCTACCTTCGCGACCCCTGACCTGACCACCTTCTGCCGGCTCGACGAGCTGGGCCTGGTTGCGGTTGGT
CAACGACTCGAGCCTGGACGGGCGGTGATCGCTTGTCAGGTTGTCGAGCCGGACGACTGGTGCCACCGCTGCGGCCAGCATGGTGTGTTGCGGGACACGG
TGGTGCGTCGGCTCGCTCACGAACCGCTCGGGTGGCGGCCGACCCTGCTGGAGGTGCTCGTCCGCCGGTACCGGTGCGCCGACTGCGCTCATGTGTGGCG
CCAGGACACGAGCCGGGCCGCGGAGGCCAAGACCCGACTGTCGCGCCGCGGGCTGCGGTGGGCGTTGGAAGGGATCGTGGTGCGCCACCTCACCGTGGCC
CGGATCGCCGAAGGCTTGGACATCAGCTGGAACACAGCGAACGACGCGGTGCTCGCCGAGGGTAAGCGGGTGCTGATCAACAACCCGCACCGGTTCGACA
AGGTGACCACGATCGGCGTGGATGAGCACGTGTGGCGGCACACCCGTCGCGGCGAGAAGTACGTGACCGTGATCATCGACCTGACGCCGGCAAGGACGAA
CAGTGGACCGGTCAGGTTGCTGGACATGGTCGAGGGCCGCTCCAAGAGCGTGTTCAAGCAGTGGTTGTCTGAGCGTGACCAGGCGTGGCGCGACCGGGTG
GAGGTCGTCGCGATGGACGGCTTCACCGGATTCAAGACCGCCACTACCGAGGAGTTGCCTGATGCGGTCGCGGTGATGGACCCCTTCCATGTCGTGAGGC
TCGCCGGCGACGCCCTCGACCGGTGCCGCCGTCGAATCCAACAGGATCTGCACGGCCACCGCGGCCGTGCCGGCGACCCGCTCTACTCGGCCCGGCGAAC
CCTGCACACCGGAGCATCGCTGCTCACCGACAAACAGAAGACCCGGCTTGACGCCCTGTTCGCTGACGAGGCGCACACCGAACTTGAGGTCACCTGGGCG
GCCTACCAACGCATGGTCACCGCCTACCGCGACCCCGACCCTGCTCGCGGCCGAGACCTCATGAACAAGCTCATCGCCAGCCTCGCCAGCGGCGTCCCAG
CAGCGCTGGTCGAACTCCGCACACTGGGCCGCACGCTGAAGCAGCGGGCGGTCGACGTGCTGGCCTACTTCGACCGGCCCGGCACCAGCAACGGTCCCAC
AGAGGCGATCAATGGCCGCCTCGAGCACCTCCGCGGATCAGCCCTCGGCTTCCGCAACCTCACCCACTATGTCGCCAGATCCCTCCTCGAAACCGGCGGG
TTCAGACCTCAGCTACACCGTGGATTATGATGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1308 bp | 435 aa | 123 | 1430 | + | No |
Chemistry : Unknow
ORF sequence :
VPDATFATPDLTTFCRLDELGLVAVGQRLEPGRAVIACQVVEPDDWCHRCGQHGVLRDTVVRRLAHEPLGWRPTLLEVLVRRYRCADCAHVWRQDTSRAA
EAKTRLSRRGLRWALEGIVVRHLTVARIAEGLDISWNTANDAVLAEGKRVLINNPHRFDKVTTIGVDEHVWRHTRRGEKYVTVIIDLTPARTNSGPVRLL
DMVEGRSKSVFKQWLSERDQAWRDRVEVVAMDGFTGFKTATTEELPDAVAVMDPFHVVRLAGDALDRCRRRIQQDLHGHRGRAGDPLYSARRTLHTGASL
LTDKQKTRLDALFADEAHTELEVTWAAYQRMVTAYRDPDPARGRDLMNKLIASLASGVPAALVELRTLGRTLKQRAVDVLAYFDRPGTSNGPTEAINGRL
EHLRGSALGFRNLTHYVARSLLETGGFRPQLHRGL
EAKTRLSRRGLRWALEGIVVRHLTVARIAEGLDISWNTANDAVLAEGKRVLINNPHRFDKVTTIGVDEHVWRHTRRGEKYVTVIIDLTPARTNSGPVRLL
DMVEGRSKSVFKQWLSERDQAWRDRVEVVAMDGFTGFKTATTEELPDAVAVMDPFHVVRLAGDALDRCRRRIQQDLHGHRGRAGDPLYSARRTLHTGASL
LTDKQKTRLDALFADEAHTELEVTWAAYQRMVTAYRDPDPARGRDLMNKLIASLASGVPAALVELRTLGRTLKQRAVDVLAYFDRPGTSNGPTEAINGRL
EHLRGSALGFRNLTHYVARSLLETGGFRPQLHRGL
Blast result :
Comments
ISPfr6 is 84% aa similar to ISPfr2. Two copies of this IS migth form a composite transposon with a DR = 8 bp. There are 12718 bp between the two ISs.
References
1] ISfinder annotation (2009).