ISPfr6

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1436 bp

Ends


IR Length : 23/24

IRL : GGCTCATCACAATCCACGGTGTAGTGGGGGTGTGATGGTGGCTGGCGTGT
IRR : GGCTCATCATAATCCACGGTGTAGCTGAGGTCTGAACCCGCCGGTTTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
TACTGACATTGGTGGCCGCGGACCTATGGGGGTATTCACAGATGCCCATCGTGCGCTCTG0
ACACGCACTCTGCGAGGACGATCTGATCCTCCTATGGGTACTGGCCATGGCCTACGGGCC0
GCCGTGGGAGAGCTCCTGGAGCGGTATTCACAGCTCGGCGAGCATTCCTGGAAGCGCGGA0

DNA sequence

GGCTCATCACAATCCACGGTGTAGTGGGGGTGTGATGGTGGCTGGCGTGTCGGTCACCGGGTAGGGGTCGAGGCCTTCCGAGGATGGGGGTTCTCACACC
AACCCATCGGGAAGACCTCGACGTGCCTGACGCTACCTTCGCGACCCCTGACCTGACCACCTTCTGCCGGCTCGACGAGCTGGGCCTGGTTGCGGTTGGT
CAACGACTCGAGCCTGGACGGGCGGTGATCGCTTGTCAGGTTGTCGAGCCGGACGACTGGTGCCACCGCTGCGGCCAGCATGGTGTGTTGCGGGACACGG
TGGTGCGTCGGCTCGCTCACGAACCGCTCGGGTGGCGGCCGACCCTGCTGGAGGTGCTCGTCCGCCGGTACCGGTGCGCCGACTGCGCTCATGTGTGGCG
CCAGGACACGAGCCGGGCCGCGGAGGCCAAGACCCGACTGTCGCGCCGCGGGCTGCGGTGGGCGTTGGAAGGGATCGTGGTGCGCCACCTCACCGTGGCC
CGGATCGCCGAAGGCTTGGACATCAGCTGGAACACAGCGAACGACGCGGTGCTCGCCGAGGGTAAGCGGGTGCTGATCAACAACCCGCACCGGTTCGACA
AGGTGACCACGATCGGCGTGGATGAGCACGTGTGGCGGCACACCCGTCGCGGCGAGAAGTACGTGACCGTGATCATCGACCTGACGCCGGCAAGGACGAA
CAGTGGACCGGTCAGGTTGCTGGACATGGTCGAGGGCCGCTCCAAGAGCGTGTTCAAGCAGTGGTTGTCTGAGCGTGACCAGGCGTGGCGCGACCGGGTG
GAGGTCGTCGCGATGGACGGCTTCACCGGATTCAAGACCGCCACTACCGAGGAGTTGCCTGATGCGGTCGCGGTGATGGACCCCTTCCATGTCGTGAGGC
TCGCCGGCGACGCCCTCGACCGGTGCCGCCGTCGAATCCAACAGGATCTGCACGGCCACCGCGGCCGTGCCGGCGACCCGCTCTACTCGGCCCGGCGAAC
CCTGCACACCGGAGCATCGCTGCTCACCGACAAACAGAAGACCCGGCTTGACGCCCTGTTCGCTGACGAGGCGCACACCGAACTTGAGGTCACCTGGGCG
GCCTACCAACGCATGGTCACCGCCTACCGCGACCCCGACCCTGCTCGCGGCCGAGACCTCATGAACAAGCTCATCGCCAGCCTCGCCAGCGGCGTCCCAG
CAGCGCTGGTCGAACTCCGCACACTGGGCCGCACGCTGAAGCAGCGGGCGGTCGACGTGCTGGCCTACTTCGACCGGCCCGGCACCAGCAACGGTCCCAC
AGAGGCGATCAATGGCCGCCTCGAGCACCTCCGCGGATCAGCCCTCGGCTTCCGCAACCTCACCCACTATGTCGCCAGATCCCTCCTCGAAACCGGCGGG
TTCAGACCTCAGCTACACCGTGGATTATGATGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1231430+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

VPDATFATPDLTTFCRLDELGLVAVGQRLEPGRAVIACQVVEPDDWCHRCGQHGVLRDTVVRRLAHEPLGWRPTLLEVLVRRYRCADCAHVWRQDTSRAA
EAKTRLSRRGLRWALEGIVVRHLTVARIAEGLDISWNTANDAVLAEGKRVLINNPHRFDKVTTIGVDEHVWRHTRRGEKYVTVIIDLTPARTNSGPVRLL
DMVEGRSKSVFKQWLSERDQAWRDRVEVVAMDGFTGFKTATTEELPDAVAVMDPFHVVRLAGDALDRCRRRIQQDLHGHRGRAGDPLYSARRTLHTGASL
LTDKQKTRLDALFADEAHTELEVTWAAYQRMVTAYRDPDPARGRDLMNKLIASLASGVPAALVELRTLGRTLKQRAVDVLAYFDRPGTSNGPTEAINGRL
EHLRGSALGFRNLTHYVARSLLETGGFRPQLHRGL

 

Blast result :
Comments
ISPfr6 is 84% aa similar to ISPfr2. Two copies of this IS migth form a composite transposon with a DR = 8 bp. There are 12718 bp between the two ISs.
References
1] ISfinder annotation (2009).