ISPfr4
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1415 bp
Ends
IR Length : 25/31
IRL : GGCTCATCACAGATGAGGGTGTAGCTGGGGCGGTGGCCAGGTAGGGGCCG
IRR : GGCTCTTCACAATCGAGGGTGTAGTTGCGGCCTGAACCCTCCGGTCTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACCTTAATC | ACATTGATCA | 0 |
DNA sequence
GGCTCATCACAGATGAGGGTGTAGCTGGGGCGGTGGCCAGGTAGGGGCCGAGGTCTCCCGATGATGGGGGTTCCTACACCTTCCATCCAGAAGACCTCGA
CTTGTCTGACGCTACCTTCGCTTGCCCCGACCTGACCAAGTTCTGTCGGCTCGACGACCTCGGGCTCGTCGTCACCGGACAACGGATCGAGCCCGACCGT
GCCGTTCTCGCGTGCCGGGTCGTCGACGACGACCGCTGGTGCCGCGGCTGCGGCCGTGAAGGCAGCCCGCGCGACTCGGTCACGCGCGAGCTCGCCCACG
CCCCGCAGGGCTGGCGGCCGACGACCTTGGTCGTGACGGTCCGTCGGTACCGGTGCACCGGCTGCACCCGCGTGTGGCGCCAAGACACCAGCGCGGCGGC
CGAACCGCGGGCCAAGCTGTCCCGTGCTGGGCTGCGGTGGGCGCTGGAAGGGATCGTGGTCCAGCACCTCACCGTCGCCCGGGTCGCCGAAGGACTCGGC
GTCGCCTGGAACACCGCCAACGACGCGGTCCTGGCCGAAGGCAAGCGGCTGCTGATCAACGACCCGGCCCGATTCGACGGCGTCAAGGTCATCGGAGTCG
ACGAACTCGTGTGGCGCCACACCCGCCGCGGCGACAAGTACGTCACCGTGATCATCGACCTCACCCCTGTCCGTGACGGCACTGGCCCCGCCCGGCTGCT
CGACATGGTCGAGGGCCGCTCCAAGCAGGCGTTCGAGTCCTGGCTCGCCGACCGGCCGCAGTCGTGGCGCGACGCCGTGCAGGTCGTCGCGATGGACGGG
TTCACCGGCTTCAAGACCGCCGCGGTCGAGGAGTTGCCCGACGTGGTCACCGTGATGGACCCCTTCCACGTCACCAGGCTCGCGGGCGAGGCACTGGACG
TGTGCCGCCGTCGGGTCCAACAAGCCATCCACGGGCACCGCGGGATGAAGGGCGACCCGCTCTACTCGGCGCGACGCACGCTGTGCACCGGCGCCGACCT
GCTCACAGACAAGCAGGCAACCCGACTCAGGTCCTTGTTCGCCGACGACAACCACGTCGAGGTCGAGGCGACCTGGGGCGTCTACCAGAGGATGATCGCT
GCCTACCGGCACGAGGACCGAAGCCGTGGCCGTGAGCTGATGGCCAAGTTGATCGACGACCTCAGCGCCGGCGTGCCGACGGTCCTGGTCGAGATCACCA
AGCTCGGCAGAACCCTGAAGAAGCGCGCCGCCGACGTCCTGGCCTACTTCGACCGGCCCGGCACCAGCAACGGCCCAACGGAGGCGATCAACCGCCGGCT
CGAGCACCTGCGCGGCTCCGCGCTCGGGTTCCGCAACCTGACCAGCTACATCGCCAGATCGCTGCTCGAGACCGGAGGGTTCAGGCCGCAACTACACCCT
CGATTGTGAAGAGCC
CTTGTCTGACGCTACCTTCGCTTGCCCCGACCTGACCAAGTTCTGTCGGCTCGACGACCTCGGGCTCGTCGTCACCGGACAACGGATCGAGCCCGACCGT
GCCGTTCTCGCGTGCCGGGTCGTCGACGACGACCGCTGGTGCCGCGGCTGCGGCCGTGAAGGCAGCCCGCGCGACTCGGTCACGCGCGAGCTCGCCCACG
CCCCGCAGGGCTGGCGGCCGACGACCTTGGTCGTGACGGTCCGTCGGTACCGGTGCACCGGCTGCACCCGCGTGTGGCGCCAAGACACCAGCGCGGCGGC
CGAACCGCGGGCCAAGCTGTCCCGTGCTGGGCTGCGGTGGGCGCTGGAAGGGATCGTGGTCCAGCACCTCACCGTCGCCCGGGTCGCCGAAGGACTCGGC
GTCGCCTGGAACACCGCCAACGACGCGGTCCTGGCCGAAGGCAAGCGGCTGCTGATCAACGACCCGGCCCGATTCGACGGCGTCAAGGTCATCGGAGTCG
ACGAACTCGTGTGGCGCCACACCCGCCGCGGCGACAAGTACGTCACCGTGATCATCGACCTCACCCCTGTCCGTGACGGCACTGGCCCCGCCCGGCTGCT
CGACATGGTCGAGGGCCGCTCCAAGCAGGCGTTCGAGTCCTGGCTCGCCGACCGGCCGCAGTCGTGGCGCGACGCCGTGCAGGTCGTCGCGATGGACGGG
TTCACCGGCTTCAAGACCGCCGCGGTCGAGGAGTTGCCCGACGTGGTCACCGTGATGGACCCCTTCCACGTCACCAGGCTCGCGGGCGAGGCACTGGACG
TGTGCCGCCGTCGGGTCCAACAAGCCATCCACGGGCACCGCGGGATGAAGGGCGACCCGCTCTACTCGGCGCGACGCACGCTGTGCACCGGCGCCGACCT
GCTCACAGACAAGCAGGCAACCCGACTCAGGTCCTTGTTCGCCGACGACAACCACGTCGAGGTCGAGGCGACCTGGGGCGTCTACCAGAGGATGATCGCT
GCCTACCGGCACGAGGACCGAAGCCGTGGCCGTGAGCTGATGGCCAAGTTGATCGACGACCTCAGCGCCGGCGTGCCGACGGTCCTGGTCGAGATCACCA
AGCTCGGCAGAACCCTGAAGAAGCGCGCCGCCGACGTCCTGGCCTACTTCGACCGGCCCGGCACCAGCAACGGCCCAACGGAGGCGATCAACCGCCGGCT
CGAGCACCTGCGCGGCTCCGCGCTCGGGTTCCGCAACCTGACCAGCTACATCGCCAGATCGCTGCTCGAGACCGGAGGGTTCAGGCCGCAACTACACCCT
CGATTGTGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1308 bp | 435 aa | 102 | 1409 | + | No |
Chemistry : Unknow
ORF sequence :
MSDATFACPDLTKFCRLDDLGLVVTGQRIEPDRAVLACRVVDDDRWCRGCGREGSPRDSVTRELAHAPQGWRPTTLVVTVRRYRCTGCTRVWRQDTSAAA
EPRAKLSRAGLRWALEGIVVQHLTVARVAEGLGVAWNTANDAVLAEGKRLLINDPARFDGVKVIGVDELVWRHTRRGDKYVTVIIDLTPVRDGTGPARLL
DMVEGRSKQAFESWLADRPQSWRDAVQVVAMDGFTGFKTAAVEELPDVVTVMDPFHVTRLAGEALDVCRRRVQQAIHGHRGMKGDPLYSARRTLCTGADL
LTDKQATRLRSLFADDNHVEVEATWGVYQRMIAAYRHEDRSRGRELMAKLIDDLSAGVPTVLVEITKLGRTLKKRAADVLAYFDRPGTSNGPTEAINRRL
EHLRGSALGFRNLTSYIARSLLETGGFRPQLHPRL
EPRAKLSRAGLRWALEGIVVQHLTVARVAEGLGVAWNTANDAVLAEGKRLLINDPARFDGVKVIGVDELVWRHTRRGDKYVTVIIDLTPVRDGTGPARLL
DMVEGRSKQAFESWLADRPQSWRDAVQVVAMDGFTGFKTAAVEELPDVVTVMDPFHVTRLAGEALDVCRRRVQQAIHGHRGMKGDPLYSARRTLCTGADL
LTDKQATRLRSLFADDNHVEVEATWGVYQRMIAAYRHEDRSRGRELMAKLIDDLSAGVPTVLVEITKLGRTLKKRAADVLAYFDRPGTSNGPTEAINRRL
EHLRGSALGFRNLTSYIARSLLETGGFRPQLHPRL
Blast result :
Comments
ISPfr4 is 87% aa similar to ISPfr2.
References
1] ISfinder annotation (2009)