ISPfr4

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1415 bp

Ends


IR Length : 25/31

IRL : GGCTCATCACAGATGAGGGTGTAGCTGGGGCGGTGGCCAGGTAGGGGCCG
IRR : GGCTCTTCACAATCGAGGGTGTAGTTGCGGCCTGAACCCTCCGGTCTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
TACCTTAATCACATTGATCA0

DNA sequence

GGCTCATCACAGATGAGGGTGTAGCTGGGGCGGTGGCCAGGTAGGGGCCGAGGTCTCCCGATGATGGGGGTTCCTACACCTTCCATCCAGAAGACCTCGA
CTTGTCTGACGCTACCTTCGCTTGCCCCGACCTGACCAAGTTCTGTCGGCTCGACGACCTCGGGCTCGTCGTCACCGGACAACGGATCGAGCCCGACCGT
GCCGTTCTCGCGTGCCGGGTCGTCGACGACGACCGCTGGTGCCGCGGCTGCGGCCGTGAAGGCAGCCCGCGCGACTCGGTCACGCGCGAGCTCGCCCACG
CCCCGCAGGGCTGGCGGCCGACGACCTTGGTCGTGACGGTCCGTCGGTACCGGTGCACCGGCTGCACCCGCGTGTGGCGCCAAGACACCAGCGCGGCGGC
CGAACCGCGGGCCAAGCTGTCCCGTGCTGGGCTGCGGTGGGCGCTGGAAGGGATCGTGGTCCAGCACCTCACCGTCGCCCGGGTCGCCGAAGGACTCGGC
GTCGCCTGGAACACCGCCAACGACGCGGTCCTGGCCGAAGGCAAGCGGCTGCTGATCAACGACCCGGCCCGATTCGACGGCGTCAAGGTCATCGGAGTCG
ACGAACTCGTGTGGCGCCACACCCGCCGCGGCGACAAGTACGTCACCGTGATCATCGACCTCACCCCTGTCCGTGACGGCACTGGCCCCGCCCGGCTGCT
CGACATGGTCGAGGGCCGCTCCAAGCAGGCGTTCGAGTCCTGGCTCGCCGACCGGCCGCAGTCGTGGCGCGACGCCGTGCAGGTCGTCGCGATGGACGGG
TTCACCGGCTTCAAGACCGCCGCGGTCGAGGAGTTGCCCGACGTGGTCACCGTGATGGACCCCTTCCACGTCACCAGGCTCGCGGGCGAGGCACTGGACG
TGTGCCGCCGTCGGGTCCAACAAGCCATCCACGGGCACCGCGGGATGAAGGGCGACCCGCTCTACTCGGCGCGACGCACGCTGTGCACCGGCGCCGACCT
GCTCACAGACAAGCAGGCAACCCGACTCAGGTCCTTGTTCGCCGACGACAACCACGTCGAGGTCGAGGCGACCTGGGGCGTCTACCAGAGGATGATCGCT
GCCTACCGGCACGAGGACCGAAGCCGTGGCCGTGAGCTGATGGCCAAGTTGATCGACGACCTCAGCGCCGGCGTGCCGACGGTCCTGGTCGAGATCACCA
AGCTCGGCAGAACCCTGAAGAAGCGCGCCGCCGACGTCCTGGCCTACTTCGACCGGCCCGGCACCAGCAACGGCCCAACGGAGGCGATCAACCGCCGGCT
CGAGCACCTGCGCGGCTCCGCGCTCGGGTTCCGCAACCTGACCAGCTACATCGCCAGATCGCTGCTCGAGACCGGAGGGTTCAGGCCGCAACTACACCCT
CGATTGTGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1021409+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSDATFACPDLTKFCRLDDLGLVVTGQRIEPDRAVLACRVVDDDRWCRGCGREGSPRDSVTRELAHAPQGWRPTTLVVTVRRYRCTGCTRVWRQDTSAAA
EPRAKLSRAGLRWALEGIVVQHLTVARVAEGLGVAWNTANDAVLAEGKRLLINDPARFDGVKVIGVDELVWRHTRRGDKYVTVIIDLTPVRDGTGPARLL
DMVEGRSKQAFESWLADRPQSWRDAVQVVAMDGFTGFKTAAVEELPDVVTVMDPFHVTRLAGEALDVCRRRVQQAIHGHRGMKGDPLYSARRTLCTGADL
LTDKQATRLRSLFADDNHVEVEATWGVYQRMIAAYRHEDRSRGRELMAKLIDDLSAGVPTVLVEITKLGRTLKKRAADVLAYFDRPGTSNGPTEAINRRL
EHLRGSALGFRNLTSYIARSLLETGGFRPQLHPRL

 

Blast result :
Comments
ISPfr4 is 87% aa similar to ISPfr2.
References
1] ISfinder annotation (2009)